Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_426 and PfGW456L13_427 are separated by 115 nucleotides PfGW456L13_427 and PfGW456L13_428 are separated by 361 nucleotides
PfGW456L13_426 - Osmolarity sensory histidine kinase EnvZ, at 489,691 to 491,004
_426
PfGW456L13_427 - Two-component system response regulator OmpR, at 491,120 to 491,860
_427
PfGW456L13_428 - Transcription accessory protein (S1 RNA-binding domain), at 492,222 to 494,546
_428
Position (kb) 491
492 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 490.417 kb on - strand, within PfGW456L13_426 at 490.470 kb on - strand, within PfGW456L13_426 at 490.470 kb on - strand, within PfGW456L13_426 at 490.542 kb on + strand, within PfGW456L13_426 at 490.722 kb on - strand, within PfGW456L13_426 at 490.722 kb on - strand, within PfGW456L13_426 at 490.722 kb on - strand, within PfGW456L13_426 at 490.734 kb on - strand, within PfGW456L13_426 at 490.836 kb on - strand, within PfGW456L13_426 at 490.937 kb on - strand at 490.937 kb on - strand at 491.107 kb on + strand at 491.107 kb on + strand at 491.108 kb on - strand at 491.108 kb on - strand at 491.108 kb on - strand at 491.154 kb on + strand at 491.182 kb on - strand at 491.340 kb on - strand, within PfGW456L13_427 at 491.340 kb on - strand, within PfGW456L13_427 at 491.416 kb on - strand, within PfGW456L13_427 at 491.889 kb on + strand at 491.897 kb on - strand at 491.897 kb on - strand at 491.898 kb on - strand at 491.906 kb on + strand at 491.908 kb on + strand at 491.908 kb on + strand at 491.908 kb on + strand at 491.908 kb on + strand at 491.908 kb on + strand at 491.909 kb on - strand at 491.909 kb on - strand at 491.909 kb on - strand at 491.909 kb on - strand at 491.909 kb on - strand at 491.909 kb on - strand at 491.909 kb on - strand at 491.909 kb on - strand at 491.928 kb on - strand at 491.943 kb on + strand at 491.943 kb on + strand at 492.007 kb on + strand at 492.007 kb on + strand at 492.007 kb on + strand at 492.008 kb on - strand at 492.008 kb on - strand at 492.008 kb on - strand at 492.008 kb on - strand at 492.008 kb on - strand at 492.009 kb on + strand at 492.009 kb on + strand at 492.009 kb on + strand at 492.009 kb on + strand at 492.009 kb on + strand at 492.009 kb on + strand at 492.010 kb on - strand at 492.010 kb on - strand at 492.010 kb on - strand at 492.010 kb on - strand at 492.010 kb on - strand at 492.047 kb on + strand at 492.047 kb on + strand at 492.047 kb on + strand at 492.047 kb on + strand at 492.047 kb on + strand at 492.047 kb on + strand at 492.048 kb on - strand at 492.050 kb on + strand at 492.050 kb on + strand at 492.050 kb on + strand at 492.050 kb on + strand at 492.050 kb on + strand at 492.051 kb on - strand at 492.087 kb on + strand at 492.087 kb on + strand at 492.087 kb on + strand at 492.087 kb on + strand at 492.087 kb on + strand at 492.088 kb on - strand at 492.088 kb on - strand at 492.088 kb on - strand at 492.088 kb on - strand at 492.175 kb on + strand at 492.176 kb on - strand at 492.176 kb on - strand at 492.222 kb on - strand at 492.263 kb on - strand at 492.263 kb on - strand at 492.311 kb on + strand at 492.458 kb on + strand, within PfGW456L13_428 at 492.458 kb on + strand, within PfGW456L13_428 at 492.526 kb on - strand, within PfGW456L13_428 at 492.534 kb on + strand, within PfGW456L13_428 at 492.535 kb on - strand, within PfGW456L13_428 at 492.535 kb on - strand, within PfGW456L13_428 at 492.705 kb on + strand, within PfGW456L13_428 at 492.705 kb on + strand, within PfGW456L13_428 at 492.705 kb on + strand, within PfGW456L13_428 at 492.705 kb on + strand, within PfGW456L13_428 at 492.706 kb on - strand, within PfGW456L13_428 at 492.706 kb on - strand, within PfGW456L13_428 at 492.706 kb on - strand, within PfGW456L13_428 at 492.706 kb on - strand, within PfGW456L13_428 at 492.706 kb on - strand, within PfGW456L13_428 at 492.706 kb on - strand, within PfGW456L13_428 at 492.762 kb on + strand, within PfGW456L13_428 at 492.762 kb on + strand, within PfGW456L13_428 at 492.763 kb on - strand, within PfGW456L13_428
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 490,417 - PfGW456L13_426 0.55 -2.4 490,470 - PfGW456L13_426 0.59 +0.1 490,470 - PfGW456L13_426 0.59 -3.3 490,542 + PfGW456L13_426 0.65 -1.2 490,722 - PfGW456L13_426 0.78 +1.0 490,722 - PfGW456L13_426 0.78 +0.6 490,722 - PfGW456L13_426 0.78 +0.2 490,734 - PfGW456L13_426 0.79 +1.2 490,836 - PfGW456L13_426 0.87 -2.5 490,937 - -2.6 490,937 - -1.9 491,107 + +1.7 491,107 + -2.7 491,108 - +0.0 491,108 - -0.2 491,108 - +1.1 491,154 + +0.0 491,182 - -2.9 491,340 - PfGW456L13_427 0.30 +0.0 491,340 - PfGW456L13_427 0.30 -2.9 491,416 - PfGW456L13_427 0.40 -2.5 491,889 + +2.6 491,897 - -3.3 491,897 - +1.0 491,898 - -2.9 491,906 + +0.2 491,908 + +0.6 491,908 + -4.3 491,908 + -4.1 491,908 + -2.5 491,908 + -3.9 491,909 - +1.3 491,909 - +0.4 491,909 - -0.9 491,909 - -1.4 491,909 - -0.8 491,909 - +0.5 491,909 - +0.2 491,909 - +0.8 491,928 - -2.8 491,943 + +0.7 491,943 + +3.2 492,007 + +0.1 492,007 + -0.4 492,007 + -0.1 492,008 - +1.0 492,008 - +0.2 492,008 - -2.6 492,008 - -1.3 492,008 - -3.4 492,009 + -3.4 492,009 + +2.1 492,009 + -1.3 492,009 + -0.2 492,009 + +1.6 492,009 + +2.3 492,010 - -1.9 492,010 - +0.0 492,010 - +1.8 492,010 - -2.8 492,010 - -3.6 492,047 + -2.2 492,047 + +1.7 492,047 + -0.8 492,047 + -3.5 492,047 + -0.4 492,047 + -0.5 492,048 - -0.5 492,050 + -1.9 492,050 + -1.9 492,050 + +1.2 492,050 + +1.1 492,050 + +0.1 492,051 - +0.6 492,087 + -0.3 492,087 + +1.2 492,087 + +0.0 492,087 + -0.7 492,087 + -0.7 492,088 - +2.0 492,088 - -1.0 492,088 - -0.5 492,088 - +1.0 492,175 + -0.5 492,176 - +1.0 492,176 - -3.8 492,222 - +1.8 492,263 - -2.9 492,263 - +0.8 492,311 + -1.2 492,458 + PfGW456L13_428 0.10 +0.9 492,458 + PfGW456L13_428 0.10 -1.4 492,526 - PfGW456L13_428 0.13 +1.9 492,534 + PfGW456L13_428 0.13 +2.1 492,535 - PfGW456L13_428 0.13 +0.2 492,535 - PfGW456L13_428 0.13 -3.5 492,705 + PfGW456L13_428 0.21 +0.7 492,705 + PfGW456L13_428 0.21 +2.0 492,705 + PfGW456L13_428 0.21 -0.1 492,705 + PfGW456L13_428 0.21 +1.1 492,706 - PfGW456L13_428 0.21 +0.9 492,706 - PfGW456L13_428 0.21 -1.2 492,706 - PfGW456L13_428 0.21 +1.1 492,706 - PfGW456L13_428 0.21 -2.8 492,706 - PfGW456L13_428 0.21 -0.4 492,706 - PfGW456L13_428 0.21 +2.4 492,762 + PfGW456L13_428 0.23 -3.6 492,762 + PfGW456L13_428 0.23 +0.5 492,763 - PfGW456L13_428 0.23 +2.3
Or see this region's nucleotide sequence