Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4143

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4142 and PfGW456L13_4143 are separated by 214 nucleotidesPfGW456L13_4143 and PfGW456L13_4144 are separated by 159 nucleotides PfGW456L13_4142 - Enoyl-CoA hydratase/isomerase family protein, at 4,658,422 to 4,659,111 _4142 PfGW456L13_4143 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 4,659,326 to 4,660,048 _4143 PfGW456L13_4144 - Magnesium and cobalt transport protein CorA, at 4,660,208 to 4,661,179 _4144 Position (kb) 4659 4660 4661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4658.404 kb on - strandat 4658.441 kb on - strandat 4658.441 kb on - strandat 4658.602 kb on + strand, within PfGW456L13_4142at 4658.631 kb on + strand, within PfGW456L13_4142at 4659.162 kb on + strandat 4659.162 kb on + strandat 4659.162 kb on + strandat 4659.162 kb on + strandat 4659.162 kb on + strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.163 kb on - strandat 4659.194 kb on + strandat 4659.195 kb on - strandat 4659.289 kb on + strandat 4659.289 kb on + strandat 4659.289 kb on + strandat 4659.290 kb on - strandat 4659.290 kb on - strandat 4659.323 kb on + strandat 4659.323 kb on + strandat 4659.323 kb on + strandat 4659.324 kb on - strandat 4659.324 kb on - strandat 4659.343 kb on + strandat 4659.344 kb on - strandat 4659.449 kb on + strand, within PfGW456L13_4143at 4659.449 kb on + strand, within PfGW456L13_4143at 4659.449 kb on + strand, within PfGW456L13_4143at 4659.512 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.557 kb on + strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.558 kb on - strand, within PfGW456L13_4143at 4659.595 kb on + strand, within PfGW456L13_4143at 4659.596 kb on - strand, within PfGW456L13_4143at 4659.872 kb on + strand, within PfGW456L13_4143at 4659.873 kb on - strand, within PfGW456L13_4143at 4660.214 kb on - strandat 4660.235 kb on + strandat 4660.235 kb on + strandat 4660.235 kb on + strandat 4660.247 kb on - strandat 4660.261 kb on + strandat 4660.349 kb on + strand, within PfGW456L13_4144at 4660.349 kb on + strand, within PfGW456L13_4144at 4660.349 kb on + strand, within PfGW456L13_4144at 4660.350 kb on - strand, within PfGW456L13_4144at 4660.350 kb on - strand, within PfGW456L13_4144at 4660.350 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.461 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.508 kb on - strand, within PfGW456L13_4144at 4660.526 kb on + strand, within PfGW456L13_4144at 4660.527 kb on - strand, within PfGW456L13_4144at 4660.527 kb on - strand, within PfGW456L13_4144at 4660.535 kb on - strand, within PfGW456L13_4144at 4660.626 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.631 kb on + strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.632 kb on - strand, within PfGW456L13_4144at 4660.661 kb on + strand, within PfGW456L13_4144at 4660.661 kb on + strand, within PfGW456L13_4144at 4660.739 kb on + strand, within PfGW456L13_4144at 4660.740 kb on - strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.755 kb on + strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.756 kb on - strand, within PfGW456L13_4144at 4660.793 kb on + strand, within PfGW456L13_4144at 4660.793 kb on + strand, within PfGW456L13_4144at 4660.793 kb on + strand, within PfGW456L13_4144at 4660.794 kb on - strand, within PfGW456L13_4144at 4660.794 kb on - strand, within PfGW456L13_4144at 4660.872 kb on - strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144at 4660.896 kb on + strand, within PfGW456L13_4144

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,658,404 - -3.8
4,658,441 - -2.0
4,658,441 - -0.3
4,658,602 + PfGW456L13_4142 0.26 -3.0
4,658,631 + PfGW456L13_4142 0.30 -0.3
4,659,162 + +0.3
4,659,162 + -1.2
4,659,162 + -3.4
4,659,162 + +1.3
4,659,162 + +0.2
4,659,163 - +1.1
4,659,163 - -1.8
4,659,163 - +1.4
4,659,163 - -1.7
4,659,163 - -3.0
4,659,163 - -0.5
4,659,163 - +0.3
4,659,163 - +0.8
4,659,163 - +0.5
4,659,163 - +0.6
4,659,163 - +0.2
4,659,163 - -1.0
4,659,163 - +0.5
4,659,163 - -3.6
4,659,194 + +0.0
4,659,195 - -0.0
4,659,289 + -1.5
4,659,289 + +0.7
4,659,289 + -1.6
4,659,290 - -2.0
4,659,290 - -3.0
4,659,323 + -1.6
4,659,323 + +1.0
4,659,323 + +0.2
4,659,324 - -0.8
4,659,324 - +0.0
4,659,343 + -1.2
4,659,344 - +2.4
4,659,449 + PfGW456L13_4143 0.17 +0.3
4,659,449 + PfGW456L13_4143 0.17 -0.4
4,659,449 + PfGW456L13_4143 0.17 -1.0
4,659,512 + PfGW456L13_4143 0.26 -1.3
4,659,557 + PfGW456L13_4143 0.32 -1.9
4,659,557 + PfGW456L13_4143 0.32 +0.2
4,659,557 + PfGW456L13_4143 0.32 -2.1
4,659,557 + PfGW456L13_4143 0.32 -4.2
4,659,557 + PfGW456L13_4143 0.32 -0.0
4,659,557 + PfGW456L13_4143 0.32 +1.1
4,659,557 + PfGW456L13_4143 0.32 +0.6
4,659,557 + PfGW456L13_4143 0.32 -0.2
4,659,557 + PfGW456L13_4143 0.32 +0.6
4,659,557 + PfGW456L13_4143 0.32 -2.1
4,659,557 + PfGW456L13_4143 0.32 +0.2
4,659,558 - PfGW456L13_4143 0.32 +0.4
4,659,558 - PfGW456L13_4143 0.32 -1.0
4,659,558 - PfGW456L13_4143 0.32 +1.8
4,659,558 - PfGW456L13_4143 0.32 -0.6
4,659,558 - PfGW456L13_4143 0.32 -1.3
4,659,558 - PfGW456L13_4143 0.32 +0.7
4,659,558 - PfGW456L13_4143 0.32 -0.8
4,659,558 - PfGW456L13_4143 0.32 +1.0
4,659,595 + PfGW456L13_4143 0.37 +1.1
4,659,596 - PfGW456L13_4143 0.37 -1.3
4,659,872 + PfGW456L13_4143 0.76 -1.5
4,659,873 - PfGW456L13_4143 0.76 -0.5
4,660,214 - -0.0
4,660,235 + +0.6
4,660,235 + -0.2
4,660,235 + +0.1
4,660,247 - -0.9
4,660,261 + +0.4
4,660,349 + PfGW456L13_4144 0.15 -3.0
4,660,349 + PfGW456L13_4144 0.15 +0.2
4,660,349 + PfGW456L13_4144 0.15 +1.3
4,660,350 - PfGW456L13_4144 0.15 +1.4
4,660,350 - PfGW456L13_4144 0.15 +1.3
4,660,350 - PfGW456L13_4144 0.15 +0.8
4,660,461 - PfGW456L13_4144 0.26 +1.1
4,660,461 - PfGW456L13_4144 0.26 +0.2
4,660,461 - PfGW456L13_4144 0.26 +1.1
4,660,461 - PfGW456L13_4144 0.26 +1.7
4,660,461 - PfGW456L13_4144 0.26 -1.7
4,660,508 - PfGW456L13_4144 0.31 -1.0
4,660,508 - PfGW456L13_4144 0.31 +0.5
4,660,508 - PfGW456L13_4144 0.31 -2.8
4,660,508 - PfGW456L13_4144 0.31 +0.4
4,660,526 + PfGW456L13_4144 0.33 +0.8
4,660,527 - PfGW456L13_4144 0.33 -0.1
4,660,527 - PfGW456L13_4144 0.33 +0.7
4,660,535 - PfGW456L13_4144 0.34 -3.3
4,660,626 + PfGW456L13_4144 0.43 -3.3
4,660,631 + PfGW456L13_4144 0.44 +1.2
4,660,631 + PfGW456L13_4144 0.44 -0.0
4,660,631 + PfGW456L13_4144 0.44 -3.9
4,660,631 + PfGW456L13_4144 0.44 -4.2
4,660,631 + PfGW456L13_4144 0.44 +1.6
4,660,631 + PfGW456L13_4144 0.44 -0.6
4,660,631 + PfGW456L13_4144 0.44 +0.5
4,660,632 - PfGW456L13_4144 0.44 -0.8
4,660,632 - PfGW456L13_4144 0.44 -0.1
4,660,632 - PfGW456L13_4144 0.44 -0.2
4,660,632 - PfGW456L13_4144 0.44 -2.2
4,660,632 - PfGW456L13_4144 0.44 -0.6
4,660,632 - PfGW456L13_4144 0.44 -3.8
4,660,661 + PfGW456L13_4144 0.47 +1.0
4,660,661 + PfGW456L13_4144 0.47 -2.0
4,660,739 + PfGW456L13_4144 0.55 -3.4
4,660,740 - PfGW456L13_4144 0.55 -3.6
4,660,755 + PfGW456L13_4144 0.56 -0.2
4,660,755 + PfGW456L13_4144 0.56 -0.6
4,660,755 + PfGW456L13_4144 0.56 -0.9
4,660,755 + PfGW456L13_4144 0.56 -0.2
4,660,755 + PfGW456L13_4144 0.56 +0.1
4,660,755 + PfGW456L13_4144 0.56 -1.3
4,660,755 + PfGW456L13_4144 0.56 +1.1
4,660,755 + PfGW456L13_4144 0.56 -1.2
4,660,755 + PfGW456L13_4144 0.56 +1.8
4,660,755 + PfGW456L13_4144 0.56 +0.4
4,660,755 + PfGW456L13_4144 0.56 -2.9
4,660,755 + PfGW456L13_4144 0.56 -1.8
4,660,756 - PfGW456L13_4144 0.56 -1.0
4,660,756 - PfGW456L13_4144 0.56 +1.5
4,660,756 - PfGW456L13_4144 0.56 -2.6
4,660,756 - PfGW456L13_4144 0.56 -4.4
4,660,793 + PfGW456L13_4144 0.60 +2.3
4,660,793 + PfGW456L13_4144 0.60 +0.9
4,660,793 + PfGW456L13_4144 0.60 +0.7
4,660,794 - PfGW456L13_4144 0.60 -0.2
4,660,794 - PfGW456L13_4144 0.60 +0.3
4,660,872 - PfGW456L13_4144 0.68 -4.3
4,660,896 + PfGW456L13_4144 0.71 -3.4
4,660,896 + PfGW456L13_4144 0.71 -1.2
4,660,896 + PfGW456L13_4144 0.71 +0.3
4,660,896 + PfGW456L13_4144 0.71 +0.8
4,660,896 + PfGW456L13_4144 0.71 +1.4
4,660,896 + PfGW456L13_4144 0.71 -2.2
4,660,896 + PfGW456L13_4144 0.71 -0.1

Or see this region's nucleotide sequence