Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3704

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_3702 and PfGW456L13_3703 are separated by 18 nucleotidesPfGW456L13_3703 and PfGW456L13_3704 are separated by 127 nucleotidesPfGW456L13_3704 and PfGW456L13_3705 are separated by 200 nucleotidesPfGW456L13_3705 and PfGW456L13_3706 are separated by 100 nucleotides PfGW456L13_3702 - Succinylglutamate desuccinylase/aspartoacylase, at 4,164,182 to 4,165,294 _3702 PfGW456L13_3703 - Arginine/ornithine ABC transporter, ATP-binding protein AotP, at 4,165,313 to 4,166,077 _3703 PfGW456L13_3704 - Transcriptional regulator RpiR in protein degradation cluster, at 4,166,205 to 4,167,113 _3704 PfGW456L13_3705 - hypothetical protein, at 4,167,314 to 4,167,547 _3705 PfGW456L13_3706 - Heavy metal RND efflux outer membrane protein, CzcC family, at 4,167,648 to 4,168,904 _3706 Position (kb) 4166 4167 4168Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4165.259 kb on - strandat 4165.316 kb on + strandat 4165.316 kb on + strandat 4165.316 kb on + strandat 4165.317 kb on - strandat 4165.317 kb on - strandat 4165.317 kb on - strandat 4165.342 kb on + strandat 4165.442 kb on - strand, within PfGW456L13_3703at 4165.490 kb on - strand, within PfGW456L13_3703at 4165.588 kb on - strand, within PfGW456L13_3703at 4165.588 kb on - strand, within PfGW456L13_3703at 4165.596 kb on + strand, within PfGW456L13_3703at 4165.709 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strandat 4165.760 kb on - strand, within PfGW456L13_3703at 4165.879 kb on + strand, within PfGW456L13_3703at 4165.880 kb on - strand, within PfGW456L13_3703at 4166.075 kb on + strandat 4166.075 kb on + strandat 4166.075 kb on + strandat 4166.076 kb on - strandat 4166.236 kb on - strandat 4166.236 kb on - strandat 4166.643 kb on + strand, within PfGW456L13_3704at 4166.670 kb on + strand, within PfGW456L13_3704at 4166.671 kb on - strand, within PfGW456L13_3704at 4166.671 kb on - strand, within PfGW456L13_3704at 4166.671 kb on - strand, within PfGW456L13_3704at 4166.818 kb on - strand, within PfGW456L13_3704at 4166.977 kb on + strand, within PfGW456L13_3704at 4167.072 kb on + strandat 4167.073 kb on - strandat 4167.193 kb on + strandat 4167.193 kb on + strandat 4167.194 kb on - strandat 4167.216 kb on - strandat 4167.216 kb on - strandat 4167.245 kb on - strandat 4167.508 kb on - strand, within PfGW456L13_3705at 4167.508 kb on - strand, within PfGW456L13_3705at 4167.576 kb on + strandat 4167.577 kb on - strandat 4167.643 kb on + strandat 4167.643 kb on + strandat 4167.663 kb on + strandat 4167.663 kb on + strandat 4167.663 kb on + strandat 4167.663 kb on + strandat 4167.664 kb on - strandat 4167.844 kb on + strand, within PfGW456L13_3706at 4167.844 kb on + strand, within PfGW456L13_3706at 4167.844 kb on + strand, within PfGW456L13_3706at 4167.844 kb on + strand, within PfGW456L13_3706at 4167.845 kb on - strand, within PfGW456L13_3706at 4167.845 kb on - strand, within PfGW456L13_3706at 4167.879 kb on + strand, within PfGW456L13_3706at 4167.879 kb on + strand, within PfGW456L13_3706at 4168.052 kb on - strand, within PfGW456L13_3706at 4168.052 kb on - strand, within PfGW456L13_3706at 4168.052 kb on - strand, within PfGW456L13_3706at 4168.086 kb on + strand, within PfGW456L13_3706at 4168.086 kb on + strand, within PfGW456L13_3706at 4168.087 kb on - strand, within PfGW456L13_3706at 4168.087 kb on - strand, within PfGW456L13_3706at 4168.087 kb on - strand, within PfGW456L13_3706

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
4,165,259 - -4.0
4,165,316 + +1.2
4,165,316 + -0.6
4,165,316 + +0.8
4,165,317 - +1.3
4,165,317 - +0.8
4,165,317 - -2.9
4,165,342 + +0.5
4,165,442 - PfGW456L13_3703 0.17 -1.8
4,165,490 - PfGW456L13_3703 0.23 -3.5
4,165,588 - PfGW456L13_3703 0.36 +0.3
4,165,588 - PfGW456L13_3703 0.36 -3.2
4,165,596 + PfGW456L13_3703 0.37 +1.4
4,165,709 + PfGW456L13_3703 0.52 +0.5
4,165,759 + PfGW456L13_3703 0.58 -4.0
4,165,759 + PfGW456L13_3703 0.58 +0.7
4,165,759 + PfGW456L13_3703 0.58 -0.6
4,165,759 + PfGW456L13_3703 0.58 -0.6
4,165,759 + PfGW456L13_3703 0.58 +1.2
4,165,759 + PfGW456L13_3703 0.58 +0.4
4,165,759 + PfGW456L13_3703 0.58 +0.1
4,165,759 + PfGW456L13_3703 0.58 +0.2
4,165,759 + PfGW456L13_3703 0.58 +1.0
4,165,760 - PfGW456L13_3703 0.58 -1.1
4,165,760 - PfGW456L13_3703 0.58 -0.5
4,165,760 - PfGW456L13_3703 0.58 -0.6
4,165,760 - PfGW456L13_3703 0.58 +2.0
4,165,760 - PfGW456L13_3703 0.58 +0.6
4,165,760 - PfGW456L13_3703 0.58 +0.0
4,165,760 - -0.5
4,165,760 - PfGW456L13_3703 0.58 +1.9
4,165,879 + PfGW456L13_3703 0.74 -2.3
4,165,880 - PfGW456L13_3703 0.74 +1.3
4,166,075 + +0.4
4,166,075 + -0.1
4,166,075 + +0.0
4,166,076 - +2.8
4,166,236 - -3.2
4,166,236 - -0.8
4,166,643 + PfGW456L13_3704 0.48 -3.7
4,166,670 + PfGW456L13_3704 0.51 -0.9
4,166,671 - PfGW456L13_3704 0.51 -1.6
4,166,671 - PfGW456L13_3704 0.51 -3.2
4,166,671 - PfGW456L13_3704 0.51 -2.6
4,166,818 - PfGW456L13_3704 0.67 -0.8
4,166,977 + PfGW456L13_3704 0.85 -2.9
4,167,072 + -2.4
4,167,073 - -2.3
4,167,193 + -0.0
4,167,193 + -0.9
4,167,194 - +0.3
4,167,216 - +0.8
4,167,216 - +0.4
4,167,245 - -3.8
4,167,508 - PfGW456L13_3705 0.83 +0.4
4,167,508 - PfGW456L13_3705 0.83 +0.8
4,167,576 + +0.2
4,167,577 - -2.8
4,167,643 + +0.4
4,167,643 + +0.5
4,167,663 + +0.5
4,167,663 + -3.5
4,167,663 + -0.2
4,167,663 + +0.2
4,167,664 - +0.2
4,167,844 + PfGW456L13_3706 0.16 +0.9
4,167,844 + PfGW456L13_3706 0.16 +0.4
4,167,844 + PfGW456L13_3706 0.16 +1.0
4,167,844 + PfGW456L13_3706 0.16 +0.9
4,167,845 - PfGW456L13_3706 0.16 -2.5
4,167,845 - PfGW456L13_3706 0.16 -0.7
4,167,879 + PfGW456L13_3706 0.18 -1.2
4,167,879 + PfGW456L13_3706 0.18 -2.9
4,168,052 - PfGW456L13_3706 0.32 -1.9
4,168,052 - PfGW456L13_3706 0.32 -2.6
4,168,052 - PfGW456L13_3706 0.32 +0.6
4,168,086 + PfGW456L13_3706 0.35 -0.0
4,168,086 + PfGW456L13_3706 0.35 +0.4
4,168,087 - PfGW456L13_3706 0.35 -0.7
4,168,087 - PfGW456L13_3706 0.35 +0.9
4,168,087 - PfGW456L13_3706 0.35 +1.9

Or see this region's nucleotide sequence