Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_355

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_354 and PfGW456L13_355 are separated by 34 nucleotidesPfGW456L13_355 and PfGW456L13_356 are separated by 1 nucleotidesPfGW456L13_356 and PfGW456L13_357 are separated by 148 nucleotides PfGW456L13_354 - Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP, at 414,295 to 415,506 _354 PfGW456L13_355 - Carboxyl-terminal protease (EC 3.4.21.102), at 415,541 to 416,860 _355 PfGW456L13_356 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 416,862 to 417,638 _356 PfGW456L13_357 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 417,787 to 418,542 _357 Position (kb) 415 416 417Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 414.571 kb on + strand, within PfGW456L13_354at 414.572 kb on - strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.629 kb on - strand, within PfGW456L13_354at 414.629 kb on - strand, within PfGW456L13_354at 414.629 kb on - strand, within PfGW456L13_354at 414.631 kb on + strand, within PfGW456L13_354at 414.631 kb on + strand, within PfGW456L13_354at 414.631 kb on + strand, within PfGW456L13_354at 414.632 kb on - strand, within PfGW456L13_354at 414.637 kb on + strand, within PfGW456L13_354at 414.638 kb on - strand, within PfGW456L13_354at 414.833 kb on + strand, within PfGW456L13_354at 414.833 kb on + strand, within PfGW456L13_354at 414.833 kb on + strand, within PfGW456L13_354at 414.834 kb on - strand, within PfGW456L13_354at 414.888 kb on + strand, within PfGW456L13_354at 414.889 kb on - strand, within PfGW456L13_354at 414.897 kb on + strand, within PfGW456L13_354at 414.995 kb on + strand, within PfGW456L13_354at 414.996 kb on - strand, within PfGW456L13_354at 415.248 kb on - strand, within PfGW456L13_354at 415.324 kb on + strand, within PfGW456L13_354at 415.325 kb on - strand, within PfGW456L13_354at 415.325 kb on - strand, within PfGW456L13_354at 415.325 kb on - strand, within PfGW456L13_354at 415.337 kb on - strand, within PfGW456L13_354at 415.337 kb on - strand, within PfGW456L13_354at 415.337 kb on - strand, within PfGW456L13_354at 415.379 kb on + strand, within PfGW456L13_354at 415.379 kb on + strand, within PfGW456L13_354at 415.380 kb on - strand, within PfGW456L13_354at 415.396 kb on - strandat 415.442 kb on - strandat 415.510 kb on + strandat 415.510 kb on + strandat 415.510 kb on + strandat 415.510 kb on + strandat 415.510 kb on + strandat 415.511 kb on - strandat 415.520 kb on + strandat 415.520 kb on + strandat 415.520 kb on + strandat 415.520 kb on + strandat 415.520 kb on + strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.525 kb on + strandat 415.525 kb on + strandat 415.526 kb on - strandat 415.730 kb on + strand, within PfGW456L13_355at 415.730 kb on + strand, within PfGW456L13_355at 415.811 kb on + strand, within PfGW456L13_355at 415.812 kb on - strand, within PfGW456L13_355at 416.166 kb on - strand, within PfGW456L13_355at 416.166 kb on - strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.598 kb on - strand, within PfGW456L13_355at 416.598 kb on - strand, within PfGW456L13_355at 416.598 kb on - strand, within PfGW456L13_355at 416.601 kb on - strand, within PfGW456L13_355at 416.694 kb on - strand, within PfGW456L13_355at 416.801 kb on + strandat 416.802 kb on - strandat 416.949 kb on + strand, within PfGW456L13_356at 416.949 kb on + strand, within PfGW456L13_356at 416.949 kb on + strand, within PfGW456L13_356at 416.950 kb on - strand, within PfGW456L13_356at 416.950 kb on - strand, within PfGW456L13_356at 416.950 kb on - strand, within PfGW456L13_356at 417.210 kb on + strand, within PfGW456L13_356at 417.210 kb on + strand, within PfGW456L13_356at 417.211 kb on - strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.630 kb on + strandat 417.658 kb on + strandat 417.658 kb on + strandat 417.658 kb on + strandat 417.659 kb on - strandat 417.659 kb on - strandat 417.708 kb on + strandat 417.778 kb on + strandat 417.788 kb on + strandat 417.788 kb on + strandat 417.788 kb on + strandat 417.788 kb on + strandat 417.789 kb on - strandat 417.789 kb on - strandat 417.789 kb on - strandat 417.794 kb on + strandat 417.794 kb on + strandat 417.795 kb on - strandat 417.795 kb on - strandat 417.795 kb on - strandat 417.795 kb on - strandat 417.805 kb on + strandat 417.805 kb on + strandat 417.806 kb on - strandat 417.806 kb on - strandat 417.806 kb on - strandat 417.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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414,571 + PfGW456L13_354 0.23 -0.5
414,572 - PfGW456L13_354 0.23 -2.4
414,628 + PfGW456L13_354 0.27 +1.6
414,628 + PfGW456L13_354 0.27 +1.9
414,628 + PfGW456L13_354 0.27 -2.0
414,628 + PfGW456L13_354 0.27 -2.0
414,628 + PfGW456L13_354 0.27 +0.9
414,628 + PfGW456L13_354 0.27 +2.0
414,628 + PfGW456L13_354 0.27 -4.8
414,628 + PfGW456L13_354 0.27 +0.7
414,629 - PfGW456L13_354 0.28 -3.7
414,629 - PfGW456L13_354 0.28 -0.8
414,629 - PfGW456L13_354 0.28 -1.0
414,631 + PfGW456L13_354 0.28 -2.4
414,631 + PfGW456L13_354 0.28 -3.6
414,631 + PfGW456L13_354 0.28 -1.9
414,632 - PfGW456L13_354 0.28 -2.8
414,637 + PfGW456L13_354 0.28 -2.6
414,638 - PfGW456L13_354 0.28 -2.3
414,833 + PfGW456L13_354 0.44 +0.3
414,833 + PfGW456L13_354 0.44 -0.8
414,833 + PfGW456L13_354 0.44 -0.2
414,834 - PfGW456L13_354 0.44 +0.8
414,888 + PfGW456L13_354 0.49 -2.7
414,889 - PfGW456L13_354 0.49 -1.8
414,897 + PfGW456L13_354 0.50 +0.3
414,995 + PfGW456L13_354 0.58 +0.1
414,996 - PfGW456L13_354 0.58 +1.0
415,248 - PfGW456L13_354 0.79 -1.6
415,324 + PfGW456L13_354 0.85 +0.6
415,325 - PfGW456L13_354 0.85 -2.4
415,325 - PfGW456L13_354 0.85 -1.5
415,325 - PfGW456L13_354 0.85 -0.5
415,337 - PfGW456L13_354 0.86 -1.4
415,337 - PfGW456L13_354 0.86 +1.2
415,337 - PfGW456L13_354 0.86 +0.4
415,379 + PfGW456L13_354 0.89 -1.1
415,379 + PfGW456L13_354 0.89 -2.7
415,380 - PfGW456L13_354 0.90 -3.4
415,396 - -1.8
415,442 - -0.0
415,510 + +2.1
415,510 + -1.0
415,510 + +1.2
415,510 + +2.5
415,510 + -1.4
415,511 - -2.5
415,520 + -0.6
415,520 + -0.8
415,520 + +0.2
415,520 + +0.5
415,520 + -1.3
415,521 - +0.1
415,521 - +0.1
415,521 - -1.1
415,521 - -3.1
415,521 - -2.4
415,521 - -3.0
415,521 - -3.4
415,521 - -0.6
415,521 - -4.9
415,521 - -3.8
415,521 - +1.1
415,521 - -1.4
415,521 - -2.9
415,525 + +0.1
415,525 + -3.5
415,526 - -4.2
415,730 + PfGW456L13_355 0.14 -1.8
415,730 + PfGW456L13_355 0.14 -3.0
415,811 + PfGW456L13_355 0.20 +0.6
415,812 - PfGW456L13_355 0.21 -2.4
416,166 - PfGW456L13_355 0.47 -2.9
416,166 - PfGW456L13_355 0.47 -2.5
416,597 + PfGW456L13_355 0.80 -1.5
416,597 + PfGW456L13_355 0.80 -2.2
416,597 + PfGW456L13_355 0.80 +0.2
416,597 + PfGW456L13_355 0.80 -2.8
416,597 + PfGW456L13_355 0.80 -0.5
416,597 + PfGW456L13_355 0.80 -1.3
416,597 + PfGW456L13_355 0.80 -2.5
416,598 - PfGW456L13_355 0.80 +0.7
416,598 - PfGW456L13_355 0.80 -1.8
416,598 - PfGW456L13_355 0.80 -0.4
416,601 - PfGW456L13_355 0.80 -3.6
416,694 - PfGW456L13_355 0.87 -3.0
416,801 + -3.6
416,802 - -3.9
416,949 + PfGW456L13_356 0.11 +0.8
416,949 + PfGW456L13_356 0.11 +0.6
416,949 + PfGW456L13_356 0.11 -0.1
416,950 - PfGW456L13_356 0.11 +1.2
416,950 - PfGW456L13_356 0.11 -3.2
416,950 - PfGW456L13_356 0.11 -2.6
417,210 + PfGW456L13_356 0.45 +1.3
417,210 + PfGW456L13_356 0.45 -2.2
417,211 - PfGW456L13_356 0.45 -0.3
417,391 + PfGW456L13_356 0.68 +0.4
417,391 + PfGW456L13_356 0.68 +0.3
417,391 + PfGW456L13_356 0.68 +0.1
417,391 + PfGW456L13_356 0.68 +1.3
417,391 + PfGW456L13_356 0.68 -2.9
417,391 + PfGW456L13_356 0.68 +1.3
417,392 - PfGW456L13_356 0.68 -2.3
417,392 - PfGW456L13_356 0.68 +0.8
417,392 - PfGW456L13_356 0.68 -3.7
417,392 - PfGW456L13_356 0.68 +0.2
417,392 - PfGW456L13_356 0.68 -3.5
417,630 + -1.9
417,658 + -0.2
417,658 + -0.1
417,658 + -0.6
417,659 - +2.7
417,659 - +0.2
417,708 + +3.4
417,778 + +2.2
417,788 + -1.0
417,788 + +2.7
417,788 + -1.5
417,788 + +2.1
417,789 - -0.9
417,789 - +1.0
417,789 - +1.5
417,794 + +0.8
417,794 + -2.5
417,795 - +1.2
417,795 - -3.3
417,795 - -1.9
417,795 - -3.0
417,805 + +1.9
417,805 + +0.4
417,806 - +0.3
417,806 - +1.1
417,806 - -0.4
417,806 - -3.3

Or see this region's nucleotide sequence