Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_350 and PfGW456L13_351 are separated by 56 nucleotides PfGW456L13_351 and PfGW456L13_352 are separated by 1 nucleotides PfGW456L13_352 and PfGW456L13_353 are separated by 153 nucleotides PfGW456L13_353 and PfGW456L13_354 are separated by 337 nucleotides
PfGW456L13_350 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 411,063 to 411,548
_350
PfGW456L13_351 - Glutaredoxin 3 (Grx3), at 411,605 to 411,859
_351
PfGW456L13_352 - FIG136845: Rhodanese-related sulfurtransferase, at 411,861 to 412,274
_352
PfGW456L13_353 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1), at 412,428 to 413,957
_353
PfGW456L13_354 - Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP, at 414,295 to 415,506
_354
Position (kb) 412
413
414 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.478 kb on + strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.479 kb on - strand, within PfGW456L13_350 at 411.578 kb on + strand at 411.578 kb on + strand at 411.579 kb on - strand at 411.579 kb on - strand at 411.598 kb on - strand at 411.801 kb on + strand, within PfGW456L13_351 at 411.801 kb on + strand, within PfGW456L13_351 at 411.801 kb on + strand, within PfGW456L13_351 at 411.801 kb on + strand, within PfGW456L13_351 at 411.802 kb on - strand, within PfGW456L13_351 at 411.802 kb on - strand, within PfGW456L13_351 at 411.802 kb on - strand, within PfGW456L13_351 at 411.802 kb on - strand, within PfGW456L13_351 at 411.820 kb on - strand, within PfGW456L13_351 at 411.840 kb on + strand at 411.840 kb on + strand at 411.840 kb on + strand at 411.841 kb on - strand at 411.859 kb on + strand at 411.859 kb on + strand at 411.859 kb on + strand at 411.860 kb on - strand at 411.860 kb on - strand at 411.860 kb on - strand at 411.860 kb on - strand at 411.860 kb on - strand at 411.902 kb on + strand at 412.026 kb on + strand, within PfGW456L13_352 at 412.027 kb on - strand, within PfGW456L13_352 at 412.027 kb on - strand, within PfGW456L13_352 at 412.116 kb on + strand, within PfGW456L13_352 at 412.117 kb on - strand, within PfGW456L13_352 at 412.117 kb on - strand, within PfGW456L13_352 at 412.117 kb on - strand, within PfGW456L13_352 at 412.117 kb on - strand, within PfGW456L13_352 at 412.167 kb on - strand, within PfGW456L13_352 at 412.223 kb on + strand, within PfGW456L13_352 at 412.237 kb on + strand at 412.238 kb on - strand at 412.238 kb on - strand at 412.266 kb on - strand at 412.311 kb on - strand at 412.312 kb on + strand at 412.312 kb on + strand at 412.312 kb on + strand at 412.312 kb on + strand at 412.312 kb on + strand at 412.312 kb on + strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.313 kb on - strand at 412.323 kb on + strand at 412.324 kb on - strand at 412.324 kb on - strand at 412.324 kb on - strand at 412.372 kb on + strand at 412.405 kb on + strand at 412.433 kb on + strand at 412.433 kb on + strand at 412.528 kb on + strand at 412.867 kb on - strand, within PfGW456L13_353 at 413.427 kb on + strand, within PfGW456L13_353 at 413.832 kb on + strand at 413.832 kb on + strand at 413.833 kb on - strand at 413.833 kb on - strand at 413.833 kb on - strand at 413.956 kb on - strand at 413.956 kb on - strand at 413.956 kb on - strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.031 kb on + strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.032 kb on - strand at 414.082 kb on + strand at 414.083 kb on - strand at 414.174 kb on + strand at 414.174 kb on + strand at 414.174 kb on + strand at 414.174 kb on + strand at 414.174 kb on + strand at 414.175 kb on - strand at 414.175 kb on - strand at 414.175 kb on - strand at 414.175 kb on - strand at 414.175 kb on - strand at 414.177 kb on + strand at 414.177 kb on + strand at 414.177 kb on + strand at 414.177 kb on + strand at 414.177 kb on + strand at 414.178 kb on - strand at 414.211 kb on - strand at 414.211 kb on - strand at 414.234 kb on - strand at 414.282 kb on + strand at 414.571 kb on + strand, within PfGW456L13_354 at 414.572 kb on - strand, within PfGW456L13_354 at 414.628 kb on + strand, within PfGW456L13_354 at 414.628 kb on + strand, within PfGW456L13_354 at 414.628 kb on + strand, within PfGW456L13_354 at 414.628 kb on + strand, within PfGW456L13_354 at 414.628 kb on + strand, within PfGW456L13_354 at 414.628 kb on + strand, within PfGW456L13_354 at 414.628 kb on + strand, within PfGW456L13_354 at 414.628 kb on + strand, within PfGW456L13_354 at 414.629 kb on - strand, within PfGW456L13_354 at 414.629 kb on - strand, within PfGW456L13_354 at 414.629 kb on - strand, within PfGW456L13_354 at 414.631 kb on + strand, within PfGW456L13_354 at 414.631 kb on + strand, within PfGW456L13_354 at 414.631 kb on + strand, within PfGW456L13_354 at 414.632 kb on - strand, within PfGW456L13_354 at 414.637 kb on + strand, within PfGW456L13_354 at 414.638 kb on - strand, within PfGW456L13_354 at 414.833 kb on + strand, within PfGW456L13_354 at 414.833 kb on + strand, within PfGW456L13_354 at 414.833 kb on + strand, within PfGW456L13_354 at 414.834 kb on - strand, within PfGW456L13_354 at 414.888 kb on + strand, within PfGW456L13_354 at 414.889 kb on - strand, within PfGW456L13_354 at 414.897 kb on + strand, within PfGW456L13_354
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 411,478 + PfGW456L13_350 0.85 -1.8 411,478 + PfGW456L13_350 0.85 -1.3 411,478 + PfGW456L13_350 0.85 -0.8 411,478 + PfGW456L13_350 0.85 -0.5 411,478 + PfGW456L13_350 0.85 -1.5 411,478 + PfGW456L13_350 0.85 -0.8 411,479 - PfGW456L13_350 0.86 -1.8 411,479 - PfGW456L13_350 0.86 -3.3 411,479 - PfGW456L13_350 0.86 -2.5 411,479 - PfGW456L13_350 0.86 -2.6 411,479 - PfGW456L13_350 0.86 -1.9 411,479 - PfGW456L13_350 0.86 -3.6 411,479 - PfGW456L13_350 0.86 -1.9 411,578 + +0.2 411,578 + -2.2 411,579 - -2.3 411,579 - -1.5 411,598 - -0.5 411,801 + PfGW456L13_351 0.77 -2.0 411,801 + PfGW456L13_351 0.77 -2.9 411,801 + PfGW456L13_351 0.77 -2.8 411,801 + PfGW456L13_351 0.77 +0.3 411,802 - PfGW456L13_351 0.77 -1.4 411,802 - PfGW456L13_351 0.77 -1.5 411,802 - PfGW456L13_351 0.77 -1.8 411,802 - PfGW456L13_351 0.77 -3.5 411,820 - PfGW456L13_351 0.84 -3.5 411,840 + -1.8 411,840 + -0.8 411,840 + -0.3 411,841 - -0.9 411,859 + -2.9 411,859 + -1.3 411,859 + -0.0 411,860 - +0.5 411,860 - +0.9 411,860 - +0.4 411,860 - +0.2 411,860 - +0.2 411,902 + -1.8 412,026 + PfGW456L13_352 0.40 -1.5 412,027 - PfGW456L13_352 0.40 +0.3 412,027 - PfGW456L13_352 0.40 +1.7 412,116 + PfGW456L13_352 0.62 -3.2 412,117 - PfGW456L13_352 0.62 -0.5 412,117 - PfGW456L13_352 0.62 +1.5 412,117 - PfGW456L13_352 0.62 -2.3 412,117 - PfGW456L13_352 0.62 -2.1 412,167 - PfGW456L13_352 0.74 -3.3 412,223 + PfGW456L13_352 0.87 -2.0 412,237 + -2.5 412,238 - -3.0 412,238 - -0.5 412,266 - +1.2 412,311 - +0.2 412,312 + -0.9 412,312 + -1.8 412,312 + -2.4 412,312 + -3.2 412,312 + +2.3 412,312 + +0.5 412,313 - -0.9 412,313 - +1.2 412,313 - -0.0 412,313 - -0.8 412,313 - +0.2 412,313 - -0.6 412,313 - -3.3 412,313 - -0.9 412,313 - -0.0 412,313 - -1.3 412,313 - +0.2 412,323 + -2.5 412,324 - +1.9 412,324 - +0.4 412,324 - -1.9 412,372 + +0.2 412,405 + -2.9 412,433 + -1.0 412,433 + -3.0 412,528 + -1.0 412,867 - PfGW456L13_353 0.29 -3.5 413,427 + PfGW456L13_353 0.65 -1.0 413,832 + -2.6 413,832 + -2.2 413,833 - -0.0 413,833 - -2.5 413,833 - -1.9 413,956 - -0.4 413,956 - -1.0 413,956 - +1.2 414,031 + -2.4 414,031 + +1.4 414,031 + +1.1 414,031 + +0.8 414,031 + +0.4 414,031 + +2.4 414,031 + +1.7 414,031 + +1.5 414,031 + +0.2 414,031 + -3.9 414,031 + -3.0 414,031 + -2.2 414,031 + -0.8 414,031 + -4.2 414,031 + +0.2 414,031 + +1.5 414,032 - +0.8 414,032 - +1.6 414,032 - +1.4 414,032 - -0.2 414,032 - +0.6 414,032 - -1.3 414,032 - -1.5 414,032 - -0.0 414,032 - -3.5 414,032 - +0.6 414,032 - -2.2 414,032 - +1.2 414,032 - +0.8 414,032 - -0.8 414,082 + +0.8 414,083 - -0.4 414,174 + -2.9 414,174 + -3.6 414,174 + +1.1 414,174 + -2.0 414,174 + +3.0 414,175 - -3.7 414,175 - -1.4 414,175 - -0.0 414,175 - -3.0 414,175 - -2.1 414,177 + +0.9 414,177 + -0.0 414,177 + +0.1 414,177 + +1.2 414,177 + -3.3 414,178 - -1.5 414,211 - -0.0 414,211 - +0.8 414,234 - -3.4 414,282 + -1.6 414,571 + PfGW456L13_354 0.23 -0.5 414,572 - PfGW456L13_354 0.23 -2.4 414,628 + PfGW456L13_354 0.27 +1.6 414,628 + PfGW456L13_354 0.27 +1.9 414,628 + PfGW456L13_354 0.27 -2.0 414,628 + PfGW456L13_354 0.27 -2.0 414,628 + PfGW456L13_354 0.27 +0.9 414,628 + PfGW456L13_354 0.27 +2.0 414,628 + PfGW456L13_354 0.27 -4.8 414,628 + PfGW456L13_354 0.27 +0.7 414,629 - PfGW456L13_354 0.28 -3.7 414,629 - PfGW456L13_354 0.28 -0.8 414,629 - PfGW456L13_354 0.28 -1.0 414,631 + PfGW456L13_354 0.28 -2.4 414,631 + PfGW456L13_354 0.28 -3.6 414,631 + PfGW456L13_354 0.28 -1.9 414,632 - PfGW456L13_354 0.28 -2.8 414,637 + PfGW456L13_354 0.28 -2.6 414,638 - PfGW456L13_354 0.28 -2.3 414,833 + PfGW456L13_354 0.44 +0.3 414,833 + PfGW456L13_354 0.44 -0.8 414,833 + PfGW456L13_354 0.44 -0.2 414,834 - PfGW456L13_354 0.44 +0.8 414,888 + PfGW456L13_354 0.49 -2.7 414,889 - PfGW456L13_354 0.49 -1.8 414,897 + PfGW456L13_354 0.50 +0.3
Or see this region's nucleotide sequence