Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2862

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
3,182,848	+		PfGW456L13_2860	0.90	+1.2
3,182,848	+		PfGW456L13_2860	0.90	-3.0
3,182,848	+		PfGW456L13_2860	0.90	+0.8
3,182,849	+		PfGW456L13_2860	0.90	+0.9
3,182,849	-		PfGW456L13_2860	0.90	-0.1
3,182,849	-		PfGW456L13_2860	0.90	+0.1
3,182,849	-		PfGW456L13_2860	0.90	-0.6
3,182,856	+				+0.9
3,182,956	+				+1.2
3,182,956	+				-0.7
3,182,956	+				-0.3
3,182,956	+				+1.8
3,182,957	-				+0.5
3,183,407	+		PfGW456L13_2861	0.53	+0.7
3,183,488	+		PfGW456L13_2861	0.62	-3.9
3,183,522	+		PfGW456L13_2861	0.66	+0.9
3,183,523	-		PfGW456L13_2861	0.66	+1.2
3,183,523	-		PfGW456L13_2861	0.66	+0.8
3,183,523	-		PfGW456L13_2861	0.66	+0.6
3,183,530	+		PfGW456L13_2861	0.67	-2.3
3,183,530	+		PfGW456L13_2861	0.67	-0.6
3,183,534	-		PfGW456L13_2861	0.67	-0.3
3,183,534	-		PfGW456L13_2861	0.67	+2.5
3,183,534	-		PfGW456L13_2861	0.67	+0.9
3,183,548	+		PfGW456L13_2861	0.69	-2.4
3,183,548	+		PfGW456L13_2861	0.69	-0.3
3,183,548	+		PfGW456L13_2861	0.69	-0.4
3,183,549	-		PfGW456L13_2861	0.69	-4.4
3,183,549	-		PfGW456L13_2861	0.69	-0.0
3,183,549	-		PfGW456L13_2861	0.69	-1.3
3,183,549	-		PfGW456L13_2861	0.69	+0.3
3,183,655	+		PfGW456L13_2861	0.81	+0.6
3,183,655	+		PfGW456L13_2861	0.81	+0.6
3,183,655	+		PfGW456L13_2861	0.81	-4.4
3,183,656	-		PfGW456L13_2861	0.81	+1.7
3,183,656	-		PfGW456L13_2861	0.81	-0.0
3,183,749	+				-0.4
3,183,869	-				-0.8
3,183,895	+				-3.1
3,183,934	+				-1.1
3,183,934	+				-0.9
3,183,935	-				-1.6
3,183,935	-				+0.8
3,183,935	-				-2.1
3,184,040	-				-0.8
3,184,151	-		PfGW456L13_2862	0.10	-0.4
3,184,243	+		PfGW456L13_2862	0.13	-1.0
3,184,243	+		PfGW456L13_2862	0.13	-0.1
3,184,366	+		PfGW456L13_2862	0.17	-2.7
3,184,367	-		PfGW456L13_2862	0.17	-3.6
3,184,378	+		PfGW456L13_2862	0.18	-3.3
3,184,378	+		PfGW456L13_2862	0.18	-2.7
3,184,378	+		PfGW456L13_2862	0.18	-2.6
3,184,379	-		PfGW456L13_2862	0.18	+1.0
3,184,411	+		PfGW456L13_2862	0.19	+0.1
3,184,411	+		PfGW456L13_2862	0.19	-3.8
3,184,412	-		PfGW456L13_2862	0.19	-1.1
3,184,447	+		PfGW456L13_2862	0.20	-2.7
3,184,448	-		PfGW456L13_2862	0.20	+0.8
3,184,448	-		PfGW456L13_2862	0.20	+0.6
3,184,486	+		PfGW456L13_2862	0.21	-1.4
3,184,940	-		PfGW456L13_2862	0.35	-0.5
3,184,940	-		PfGW456L13_2862	0.35	+0.6
3,185,000	+		PfGW456L13_2862	0.37	-2.4
3,185,000	+		PfGW456L13_2862	0.37	-3.7
3,185,047	+		PfGW456L13_2862	0.39	-0.9
3,185,047	+		PfGW456L13_2862	0.39	-2.2
3,185,048	-		PfGW456L13_2862	0.39	-1.9
3,185,048	-		PfGW456L13_2862	0.39	-1.4
3,185,050	+		PfGW456L13_2862	0.39	-1.6
3,185,050	+		PfGW456L13_2862	0.39	-2.3
3,185,050	+		PfGW456L13_2862	0.39	-1.0
3,185,050	+		PfGW456L13_2862	0.39	-0.0
3,185,050	+		PfGW456L13_2862	0.39	-0.9
3,185,050	+		PfGW456L13_2862	0.39	+0.9
3,185,051	-		PfGW456L13_2862	0.39	-0.7
3,185,051	-		PfGW456L13_2862	0.39	-2.9
3,185,051	-		PfGW456L13_2862	0.39	-1.2
3,185,051	-		PfGW456L13_2862	0.39	-2.3
3,185,051	-		PfGW456L13_2862	0.39	-1.0
3,185,051	-		PfGW456L13_2862	0.39	-1.4
3,185,185	+		PfGW456L13_2862	0.43	-2.6
3,185,327	-		PfGW456L13_2862	0.48	-0.8
3,185,378	-		PfGW456L13_2862	0.49	-0.0
3,185,380	+		PfGW456L13_2862	0.49	-0.4
3,185,380	+		PfGW456L13_2862	0.49	-0.0
3,185,380	+		PfGW456L13_2862	0.49	-3.7
3,185,380	+		PfGW456L13_2862	0.49	-2.6
3,185,380	+		PfGW456L13_2862	0.49	-1.2
3,185,380	+		PfGW456L13_2862	0.49	-0.4
3,185,380	+		PfGW456L13_2862	0.49	+0.6
3,185,380	+		PfGW456L13_2862	0.49	-4.8
3,185,380	+		PfGW456L13_2862	0.49	-1.2
3,185,380	+		PfGW456L13_2862	0.49	-2.0
3,185,380	+		PfGW456L13_2862	0.49	+0.4
3,185,381	-		PfGW456L13_2862	0.49	+0.1
3,185,381	-		PfGW456L13_2862	0.49	-1.4
3,185,381	-		PfGW456L13_2862	0.49	+0.7
3,185,381	-		PfGW456L13_2862	0.49	-1.6
3,185,386	-		PfGW456L13_2862	0.49	-1.6
3,185,386	-		PfGW456L13_2862	0.49	+0.8
3,185,386	-		PfGW456L13_2862	0.49	-3.7
3,185,435	-		PfGW456L13_2862	0.51	+1.4
3,185,599	+		PfGW456L13_2862	0.56	-4.3
3,185,599	+		PfGW456L13_2862	0.56	-3.1
3,185,599	+		PfGW456L13_2862	0.56	-0.1
3,185,599	+		PfGW456L13_2862	0.56	-1.4
3,185,599	+		PfGW456L13_2862	0.56	-1.5
3,185,600	-		PfGW456L13_2862	0.56	-0.2
3,185,600	-		PfGW456L13_2862	0.56	-2.6
3,185,713	+		PfGW456L13_2862	0.60	-2.0
3,185,713	+		PfGW456L13_2862	0.60	-2.6
3,185,713	+		PfGW456L13_2862	0.60	+0.5
3,185,713	+		PfGW456L13_2862	0.60	-0.3
3,185,714	-		PfGW456L13_2862	0.60	-0.2
3,185,714	-		PfGW456L13_2862	0.60	-1.2
3,185,717	+		PfGW456L13_2862	0.60	-2.4
3,185,717	+		PfGW456L13_2862	0.60	+0.6
3,185,718	-		PfGW456L13_2862	0.60	-4.5
3,185,755	+		PfGW456L13_2862	0.61	+0.3
3,185,860	+		PfGW456L13_2862	0.64	-0.7
3,185,861	-		PfGW456L13_2862	0.64	-1.6
3,186,123	+		PfGW456L13_2862	0.73	+0.3
3,186,123	+		PfGW456L13_2862	0.73	-1.8
3,186,123	+		PfGW456L13_2862	0.73	+0.3
3,186,124	-		PfGW456L13_2862	0.73	-3.2
3,186,124	-		PfGW456L13_2862	0.73	-3.5
3,186,124	-		PfGW456L13_2862	0.73	-0.9
3,186,312	+		PfGW456L13_2862	0.79	-4.5
3,186,313	-		PfGW456L13_2862	0.79	-0.9
3,186,313	-		PfGW456L13_2862	0.79	-0.6
3,186,352	+		PfGW456L13_2862	0.80	+0.8
3,186,352	+				-1.0
3,186,353	-		PfGW456L13_2862	0.80	-2.3
3,186,566	-		PfGW456L13_2862	0.87	-0.7
3,186,728	-				+1.7
3,186,867	-				-2.8
3,186,867	-				-0.3
3,186,868	+				-0.4
3,186,868	+				-3.1
3,186,868	+				-0.1
3,186,868	+				-2.4
3,186,868	+				-1.1
3,186,868	+				-1.7
3,186,869	-				-2.0
3,186,869	-				+0.9
3,186,869	-				-0.0
3,186,869	-				-3.8
3,186,869	-				-1.1
3,186,875	-				-4.2
3,187,166	+				-0.1
3,187,455	+		PfGW456L13_2863	0.22	-2.0
3,187,455	+		PfGW456L13_2863	0.22	-0.2
3,187,455	+		PfGW456L13_2863	0.22	-3.0
3,187,463	-		PfGW456L13_2863	0.22	-2.8
3,187,898	+		PfGW456L13_2863	0.42	-3.7
3,187,898	+		PfGW456L13_2863	0.42	-3.1
3,187,954	+		PfGW456L13_2863	0.45	+0.8
3,187,955	-		PfGW456L13_2863	0.45	-3.0