Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2753

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2752 and PfGW456L13_2753 overlap by 4 nucleotidesPfGW456L13_2753 and PfGW456L13_2754 are separated by 11 nucleotides PfGW456L13_2752 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 3,053,691 to 3,055,127 _2752 PfGW456L13_2753 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 3,055,124 to 3,055,477 _2753 PfGW456L13_2754 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 3,055,489 to 3,056,610 _2754 Position (kb) 3055 3056Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3054.931 kb on + strand, within PfGW456L13_2752at 3054.931 kb on + strand, within PfGW456L13_2752at 3054.931 kb on + strand, within PfGW456L13_2752at 3054.931 kb on + strand, within PfGW456L13_2752at 3054.969 kb on - strand, within PfGW456L13_2752at 3054.969 kb on - strand, within PfGW456L13_2752at 3054.969 kb on - strand, within PfGW456L13_2752at 3054.969 kb on - strand, within PfGW456L13_2752at 3054.969 kb on - strand, within PfGW456L13_2752at 3054.969 kb on - strand, within PfGW456L13_2752at 3054.969 kb on - strand, within PfGW456L13_2752at 3054.971 kb on - strand, within PfGW456L13_2752at 3055.416 kb on + strand, within PfGW456L13_2753at 3056.169 kb on - strand, within PfGW456L13_2754at 3056.172 kb on - strand, within PfGW456L13_2754at 3056.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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3,054,931 + PfGW456L13_2752 0.86 -2.7
3,054,931 + PfGW456L13_2752 0.86 +2.6
3,054,931 + PfGW456L13_2752 0.86 +2.4
3,054,931 + PfGW456L13_2752 0.86 -3.1
3,054,969 - PfGW456L13_2752 0.89 -0.6
3,054,969 - PfGW456L13_2752 0.89 -0.7
3,054,969 - PfGW456L13_2752 0.89 +1.2
3,054,969 - PfGW456L13_2752 0.89 +0.1
3,054,969 - PfGW456L13_2752 0.89 -3.0
3,054,969 - PfGW456L13_2752 0.89 -2.8
3,054,969 - PfGW456L13_2752 0.89 -1.0
3,054,971 - PfGW456L13_2752 0.89 -1.5
3,055,416 + PfGW456L13_2753 0.82 -0.1
3,056,169 - PfGW456L13_2754 0.61 +0.3
3,056,172 - PfGW456L13_2754 0.61 -3.5
3,056,172 - -0.4

Or see this region's nucleotide sequence