Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2085

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2083 and PfGW456L13_2084 are separated by 98 nucleotidesPfGW456L13_2084 and PfGW456L13_2085 overlap by 4 nucleotidesPfGW456L13_2085 and PfGW456L13_2086 overlap by 1 nucleotides PfGW456L13_2083 - DNA internalization-related competence protein ComEC/Rec2, at 2,288,877 to 2,291,111 _2083 PfGW456L13_2084 - MotA/TolQ/ExbB proton channel family protein, at 2,291,210 to 2,291,845 _2084 PfGW456L13_2085 - Biopolymer transport protein ExbD/TolR, at 2,291,842 to 2,292,270 _2085 PfGW456L13_2086 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 2,292,270 to 2,293,280 _2086 Position (kb) 2291 2292 2293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2290.999 kb on - strandat 2290.999 kb on - strandat 2290.999 kb on - strandat 2290.999 kb on - strandat 2290.999 kb on - strandat 2291.171 kb on + strandat 2291.172 kb on - strandat 2291.172 kb on - strandat 2291.349 kb on + strand, within PfGW456L13_2084at 2291.662 kb on + strand, within PfGW456L13_2084at 2291.662 kb on + strand, within PfGW456L13_2084at 2291.718 kb on + strand, within PfGW456L13_2084at 2291.799 kb on + strandat 2291.799 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,290,999 - -3.1
2,290,999 - +2.0
2,290,999 - -1.1
2,290,999 - +1.0
2,290,999 - -1.1
2,291,171 + -1.0
2,291,172 - -1.4
2,291,172 - +0.4
2,291,349 + PfGW456L13_2084 0.22 -3.6
2,291,662 + PfGW456L13_2084 0.71 -3.8
2,291,662 + PfGW456L13_2084 0.71 -2.6
2,291,718 + PfGW456L13_2084 0.80 -2.4
2,291,799 + -1.2
2,291,799 + -0.8

Or see this region's nucleotide sequence