Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_203

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_201 and PfGW456L13_202 overlap by 31 nucleotidesPfGW456L13_202 and PfGW456L13_203 overlap by 1 nucleotidesPfGW456L13_203 and PfGW456L13_204 overlap by 17 nucleotides PfGW456L13_201 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 230,142 to 231,623 _201 PfGW456L13_202 - Probable transcription regulator Mig-14, at 231,593 to 232,489 _202 PfGW456L13_203 - Glycosyl transferase in large core OS assembly cluster, at 232,489 to 233,619 _203 PfGW456L13_204 - Carbamoyltransferase in large core OS assembly cluster, at 233,603 to 235,360 _204 Position (kb) 232 233 234Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 231.542 kb on + strandat 231.597 kb on - strandat 231.636 kb on + strandat 231.636 kb on + strandat 231.728 kb on + strand, within PfGW456L13_202at 231.780 kb on + strand, within PfGW456L13_202at 231.816 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.428 kb on + strandat 232.428 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.620 kb on + strand, within PfGW456L13_203at 232.735 kb on + strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.824 kb on + strand, within PfGW456L13_203at 232.824 kb on + strand, within PfGW456L13_203at 232.987 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.223 kb on + strand, within PfGW456L13_203at 233.255 kb on + strand, within PfGW456L13_203at 233.256 kb on - strand, within PfGW456L13_203at 233.256 kb on - strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.540 kb on + strandat 233.668 kb on - strandat 233.692 kb on + strandat 233.692 kb on + strandat 233.692 kb on + strandat 233.692 kb on + strandat 233.693 kb on - strandat 233.693 kb on - strandat 233.693 kb on - strandat 233.693 kb on - strandat 233.803 kb on - strand, within PfGW456L13_204at 233.803 kb on - strand, within PfGW456L13_204at 233.806 kb on - strand, within PfGW456L13_204at 233.815 kb on + strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.817 kb on + strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 234.247 kb on - strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.418 kb on - strand, within PfGW456L13_204at 234.418 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.514 kb on - strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.588 kb on + strand, within PfGW456L13_204at 234.588 kb on + strand, within PfGW456L13_204at 234.588 kb on + strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.591 kb on + strand, within PfGW456L13_204at 234.591 kb on + strand, within PfGW456L13_204at 234.591 kb on + strand, within PfGW456L13_204at 234.592 kb on - strand, within PfGW456L13_204at 234.592 kb on - strand, within PfGW456L13_204

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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231,542 + +0.5
231,597 - -2.4
231,636 + -1.7
231,636 + -2.5
231,728 + PfGW456L13_202 0.15 -1.7
231,780 + PfGW456L13_202 0.21 -2.0
231,816 + PfGW456L13_202 0.25 -4.4
231,957 + PfGW456L13_202 0.41 -2.8
231,957 + PfGW456L13_202 0.41 -3.6
231,957 + PfGW456L13_202 0.41 -3.4
231,957 + PfGW456L13_202 0.41 -3.8
231,957 + PfGW456L13_202 0.41 -2.4
231,957 + PfGW456L13_202 0.41 -3.6
232,152 + PfGW456L13_202 0.62 -2.9
232,152 + PfGW456L13_202 0.62 -3.5
232,152 + PfGW456L13_202 0.62 -2.8
232,428 + -4.6
232,428 + -2.4
232,432 + -2.1
232,432 + -1.5
232,432 + -2.7
232,432 + -2.8
232,620 + PfGW456L13_203 0.12 -1.2
232,735 + PfGW456L13_203 0.22 -3.2
232,802 - PfGW456L13_203 0.28 -3.4
232,802 - PfGW456L13_203 0.28 -2.8
232,802 - PfGW456L13_203 0.28 -4.1
232,802 - PfGW456L13_203 0.28 -2.4
232,802 - PfGW456L13_203 0.28 -3.4
232,802 - PfGW456L13_203 0.28 -4.3
232,802 - PfGW456L13_203 0.28 -3.2
232,802 - PfGW456L13_203 0.28 -3.8
232,802 - PfGW456L13_203 0.28 -3.4
232,820 + PfGW456L13_203 0.29 -2.0
232,820 + PfGW456L13_203 0.29 -1.8
232,820 + PfGW456L13_203 0.29 -1.2
232,821 - PfGW456L13_203 0.29 -3.2
232,821 - PfGW456L13_203 0.29 -0.1
232,821 - PfGW456L13_203 0.29 -0.8
232,824 + PfGW456L13_203 0.30 -2.8
232,824 + PfGW456L13_203 0.30 -2.2
232,987 - PfGW456L13_203 0.44 -4.8
233,121 - PfGW456L13_203 0.56 -2.9
233,121 - PfGW456L13_203 0.56 -3.6
233,121 - PfGW456L13_203 0.56 -3.6
233,223 + PfGW456L13_203 0.65 -2.7
233,255 + PfGW456L13_203 0.68 -1.9
233,256 - PfGW456L13_203 0.68 -2.7
233,256 - PfGW456L13_203 0.68 -1.7
233,315 + PfGW456L13_203 0.73 -3.8
233,315 + PfGW456L13_203 0.73 +0.1
233,315 + PfGW456L13_203 0.73 -1.1
233,315 + PfGW456L13_203 0.73 -1.1
233,315 + PfGW456L13_203 0.73 -2.6
233,316 - PfGW456L13_203 0.73 -2.8
233,316 - PfGW456L13_203 0.73 -3.5
233,316 - PfGW456L13_203 0.73 -0.2
233,427 - PfGW456L13_203 0.83 -1.9
233,427 - PfGW456L13_203 0.83 -3.5
233,427 - PfGW456L13_203 0.83 -2.5
233,540 + -0.5
233,668 - -1.5
233,692 + +0.3
233,692 + -2.0
233,692 + -1.7
233,692 + -1.2
233,693 - -4.1
233,693 - +0.5
233,693 - -0.1
233,693 - -0.1
233,803 - PfGW456L13_204 0.11 -0.6
233,803 - PfGW456L13_204 0.11 -1.4
233,806 - PfGW456L13_204 0.12 +0.7
233,815 + PfGW456L13_204 0.12 -1.7
233,816 - PfGW456L13_204 0.12 -1.7
233,816 - PfGW456L13_204 0.12 -0.4
233,816 - PfGW456L13_204 0.12 -2.2
233,816 - PfGW456L13_204 0.12 +0.5
233,816 - PfGW456L13_204 0.12 -4.8
233,817 + PfGW456L13_204 0.12 -0.8
233,818 - PfGW456L13_204 0.12 -1.0
233,818 - PfGW456L13_204 0.12 -0.4
233,818 - PfGW456L13_204 0.12 -2.0
233,818 - PfGW456L13_204 0.12 -0.0
233,818 - PfGW456L13_204 0.12 -0.0
234,247 - PfGW456L13_204 0.37 -2.6
234,294 + PfGW456L13_204 0.39 -1.5
234,294 + PfGW456L13_204 0.39 -2.5
234,294 + PfGW456L13_204 0.39 +0.9
234,294 + PfGW456L13_204 0.39 -1.3
234,295 - PfGW456L13_204 0.39 -0.2
234,295 - PfGW456L13_204 0.39 +0.9
234,295 - PfGW456L13_204 0.39 -0.2
234,295 - PfGW456L13_204 0.39 +0.3
234,295 - PfGW456L13_204 0.39 -2.5
234,295 - PfGW456L13_204 0.39 -2.6
234,295 - PfGW456L13_204 0.39 +0.0
234,295 - PfGW456L13_204 0.39 -2.0
234,295 - PfGW456L13_204 0.39 +0.2
234,418 - PfGW456L13_204 0.46 -0.4
234,418 - PfGW456L13_204 0.46 +1.3
234,457 - PfGW456L13_204 0.49 -1.2
234,457 - PfGW456L13_204 0.49 +0.5
234,457 - PfGW456L13_204 0.49 -1.1
234,457 - PfGW456L13_204 0.49 -0.6
234,514 - PfGW456L13_204 0.52 +1.0
234,522 + PfGW456L13_204 0.52 +0.9
234,522 + PfGW456L13_204 0.52 +0.2
234,522 + PfGW456L13_204 0.52 -0.6
234,522 + PfGW456L13_204 0.52 -2.3
234,522 + PfGW456L13_204 0.52 +1.9
234,522 + PfGW456L13_204 0.52 +1.0
234,523 - PfGW456L13_204 0.52 -3.7
234,523 - PfGW456L13_204 0.52 -4.1
234,523 - PfGW456L13_204 0.52 -3.5
234,523 - PfGW456L13_204 0.52 -4.5
234,523 - PfGW456L13_204 0.52 -1.8
234,523 - PfGW456L13_204 0.52 -2.9
234,523 - PfGW456L13_204 0.52 +0.9
234,523 - PfGW456L13_204 0.52 -3.4
234,523 - PfGW456L13_204 0.52 +0.3
234,523 - PfGW456L13_204 0.52 -2.9
234,523 - PfGW456L13_204 0.52 -2.2
234,523 - PfGW456L13_204 0.52 -0.2
234,588 + PfGW456L13_204 0.56 +0.2
234,588 + PfGW456L13_204 0.56 -0.0
234,588 + PfGW456L13_204 0.56 +1.0
234,589 - PfGW456L13_204 0.56 -3.9
234,589 - PfGW456L13_204 0.56 -0.5
234,589 - PfGW456L13_204 0.56 -0.9
234,589 - PfGW456L13_204 0.56 +0.3
234,589 - PfGW456L13_204 0.56 -2.4
234,589 - PfGW456L13_204 0.56 -3.6
234,589 - PfGW456L13_204 0.56 -1.0
234,589 - PfGW456L13_204 0.56 -0.0
234,589 - PfGW456L13_204 0.56 -0.3
234,589 - PfGW456L13_204 0.56 -0.8
234,589 - PfGW456L13_204 0.56 +0.2
234,591 + PfGW456L13_204 0.56 +1.2
234,591 + PfGW456L13_204 0.56 +1.9
234,591 + PfGW456L13_204 0.56 -2.9
234,592 - PfGW456L13_204 0.56 -1.5
234,592 - PfGW456L13_204 0.56 -0.6

Or see this region's nucleotide sequence