Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_201 and PfGW456L13_202 overlap by 31 nucleotides PfGW456L13_202 and PfGW456L13_203 overlap by 1 nucleotides PfGW456L13_203 and PfGW456L13_204 overlap by 17 nucleotides
PfGW456L13_201 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 230,142 to 231,623
_201
PfGW456L13_202 - Probable transcription regulator Mig-14, at 231,593 to 232,489
_202
PfGW456L13_203 - Glycosyl transferase in large core OS assembly cluster, at 232,489 to 233,619
_203
PfGW456L13_204 - Carbamoyltransferase in large core OS assembly cluster, at 233,603 to 235,360
_204
Position (kb)
232
233
234 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 231.542 kb on + strand at 231.597 kb on - strand at 231.636 kb on + strand at 231.636 kb on + strand at 231.728 kb on + strand, within PfGW456L13_202 at 231.780 kb on + strand, within PfGW456L13_202 at 231.816 kb on + strand, within PfGW456L13_202 at 231.957 kb on + strand, within PfGW456L13_202 at 231.957 kb on + strand, within PfGW456L13_202 at 231.957 kb on + strand, within PfGW456L13_202 at 231.957 kb on + strand, within PfGW456L13_202 at 231.957 kb on + strand, within PfGW456L13_202 at 231.957 kb on + strand, within PfGW456L13_202 at 232.152 kb on + strand, within PfGW456L13_202 at 232.152 kb on + strand, within PfGW456L13_202 at 232.152 kb on + strand, within PfGW456L13_202 at 232.428 kb on + strand at 232.428 kb on + strand at 232.432 kb on + strand at 232.432 kb on + strand at 232.432 kb on + strand at 232.432 kb on + strand at 232.620 kb on + strand, within PfGW456L13_203 at 232.735 kb on + strand, within PfGW456L13_203 at 232.802 kb on - strand, within PfGW456L13_203 at 232.802 kb on - strand, within PfGW456L13_203 at 232.802 kb on - strand, within PfGW456L13_203 at 232.802 kb on - strand, within PfGW456L13_203 at 232.802 kb on - strand, within PfGW456L13_203 at 232.802 kb on - strand, within PfGW456L13_203 at 232.802 kb on - strand, within PfGW456L13_203 at 232.802 kb on - strand, within PfGW456L13_203 at 232.802 kb on - strand, within PfGW456L13_203 at 232.820 kb on + strand, within PfGW456L13_203 at 232.820 kb on + strand, within PfGW456L13_203 at 232.820 kb on + strand, within PfGW456L13_203 at 232.821 kb on - strand, within PfGW456L13_203 at 232.821 kb on - strand, within PfGW456L13_203 at 232.821 kb on - strand, within PfGW456L13_203 at 232.824 kb on + strand, within PfGW456L13_203 at 232.824 kb on + strand, within PfGW456L13_203 at 232.987 kb on - strand, within PfGW456L13_203 at 233.121 kb on - strand, within PfGW456L13_203 at 233.121 kb on - strand, within PfGW456L13_203 at 233.121 kb on - strand, within PfGW456L13_203 at 233.223 kb on + strand, within PfGW456L13_203 at 233.255 kb on + strand, within PfGW456L13_203 at 233.256 kb on - strand, within PfGW456L13_203 at 233.256 kb on - strand, within PfGW456L13_203 at 233.315 kb on + strand, within PfGW456L13_203 at 233.315 kb on + strand, within PfGW456L13_203 at 233.315 kb on + strand, within PfGW456L13_203 at 233.315 kb on + strand, within PfGW456L13_203 at 233.315 kb on + strand, within PfGW456L13_203 at 233.316 kb on - strand, within PfGW456L13_203 at 233.316 kb on - strand, within PfGW456L13_203 at 233.316 kb on - strand, within PfGW456L13_203 at 233.427 kb on - strand, within PfGW456L13_203 at 233.427 kb on - strand, within PfGW456L13_203 at 233.427 kb on - strand, within PfGW456L13_203 at 233.540 kb on + strand at 233.668 kb on - strand at 233.692 kb on + strand at 233.692 kb on + strand at 233.692 kb on + strand at 233.692 kb on + strand at 233.693 kb on - strand at 233.693 kb on - strand at 233.693 kb on - strand at 233.693 kb on - strand at 233.803 kb on - strand, within PfGW456L13_204 at 233.803 kb on - strand, within PfGW456L13_204 at 233.806 kb on - strand, within PfGW456L13_204 at 233.815 kb on + strand, within PfGW456L13_204 at 233.816 kb on - strand, within PfGW456L13_204 at 233.816 kb on - strand, within PfGW456L13_204 at 233.816 kb on - strand, within PfGW456L13_204 at 233.816 kb on - strand, within PfGW456L13_204 at 233.816 kb on - strand, within PfGW456L13_204 at 233.817 kb on + strand, within PfGW456L13_204 at 233.818 kb on - strand, within PfGW456L13_204 at 233.818 kb on - strand, within PfGW456L13_204 at 233.818 kb on - strand, within PfGW456L13_204 at 233.818 kb on - strand, within PfGW456L13_204 at 233.818 kb on - strand, within PfGW456L13_204 at 234.247 kb on - strand, within PfGW456L13_204 at 234.294 kb on + strand, within PfGW456L13_204 at 234.294 kb on + strand, within PfGW456L13_204 at 234.294 kb on + strand, within PfGW456L13_204 at 234.294 kb on + strand, within PfGW456L13_204 at 234.295 kb on - strand, within PfGW456L13_204 at 234.295 kb on - strand, within PfGW456L13_204 at 234.295 kb on - strand, within PfGW456L13_204 at 234.295 kb on - strand, within PfGW456L13_204 at 234.295 kb on - strand, within PfGW456L13_204 at 234.295 kb on - strand, within PfGW456L13_204 at 234.295 kb on - strand, within PfGW456L13_204 at 234.295 kb on - strand, within PfGW456L13_204 at 234.295 kb on - strand, within PfGW456L13_204 at 234.418 kb on - strand, within PfGW456L13_204 at 234.418 kb on - strand, within PfGW456L13_204 at 234.457 kb on - strand, within PfGW456L13_204 at 234.457 kb on - strand, within PfGW456L13_204 at 234.457 kb on - strand, within PfGW456L13_204 at 234.457 kb on - strand, within PfGW456L13_204 at 234.514 kb on - strand, within PfGW456L13_204 at 234.522 kb on + strand, within PfGW456L13_204 at 234.522 kb on + strand, within PfGW456L13_204 at 234.522 kb on + strand, within PfGW456L13_204 at 234.522 kb on + strand, within PfGW456L13_204 at 234.522 kb on + strand, within PfGW456L13_204 at 234.522 kb on + strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.523 kb on - strand, within PfGW456L13_204 at 234.588 kb on + strand, within PfGW456L13_204 at 234.588 kb on + strand, within PfGW456L13_204 at 234.588 kb on + strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.589 kb on - strand, within PfGW456L13_204 at 234.591 kb on + strand, within PfGW456L13_204 at 234.591 kb on + strand, within PfGW456L13_204 at 234.591 kb on + strand, within PfGW456L13_204 at 234.592 kb on - strand, within PfGW456L13_204 at 234.592 kb on - strand, within PfGW456L13_204
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 231,542 + +0.5 231,597 - -2.4 231,636 + -1.7 231,636 + -2.5 231,728 + PfGW456L13_202 0.15 -1.7 231,780 + PfGW456L13_202 0.21 -2.0 231,816 + PfGW456L13_202 0.25 -4.4 231,957 + PfGW456L13_202 0.41 -2.8 231,957 + PfGW456L13_202 0.41 -3.6 231,957 + PfGW456L13_202 0.41 -3.4 231,957 + PfGW456L13_202 0.41 -3.8 231,957 + PfGW456L13_202 0.41 -2.4 231,957 + PfGW456L13_202 0.41 -3.6 232,152 + PfGW456L13_202 0.62 -2.9 232,152 + PfGW456L13_202 0.62 -3.5 232,152 + PfGW456L13_202 0.62 -2.8 232,428 + -4.6 232,428 + -2.4 232,432 + -2.1 232,432 + -1.5 232,432 + -2.7 232,432 + -2.8 232,620 + PfGW456L13_203 0.12 -1.2 232,735 + PfGW456L13_203 0.22 -3.2 232,802 - PfGW456L13_203 0.28 -3.4 232,802 - PfGW456L13_203 0.28 -2.8 232,802 - PfGW456L13_203 0.28 -4.1 232,802 - PfGW456L13_203 0.28 -2.4 232,802 - PfGW456L13_203 0.28 -3.4 232,802 - PfGW456L13_203 0.28 -4.3 232,802 - PfGW456L13_203 0.28 -3.2 232,802 - PfGW456L13_203 0.28 -3.8 232,802 - PfGW456L13_203 0.28 -3.4 232,820 + PfGW456L13_203 0.29 -2.0 232,820 + PfGW456L13_203 0.29 -1.8 232,820 + PfGW456L13_203 0.29 -1.2 232,821 - PfGW456L13_203 0.29 -3.2 232,821 - PfGW456L13_203 0.29 -0.1 232,821 - PfGW456L13_203 0.29 -0.8 232,824 + PfGW456L13_203 0.30 -2.8 232,824 + PfGW456L13_203 0.30 -2.2 232,987 - PfGW456L13_203 0.44 -4.8 233,121 - PfGW456L13_203 0.56 -2.9 233,121 - PfGW456L13_203 0.56 -3.6 233,121 - PfGW456L13_203 0.56 -3.6 233,223 + PfGW456L13_203 0.65 -2.7 233,255 + PfGW456L13_203 0.68 -1.9 233,256 - PfGW456L13_203 0.68 -2.7 233,256 - PfGW456L13_203 0.68 -1.7 233,315 + PfGW456L13_203 0.73 -3.8 233,315 + PfGW456L13_203 0.73 +0.1 233,315 + PfGW456L13_203 0.73 -1.1 233,315 + PfGW456L13_203 0.73 -1.1 233,315 + PfGW456L13_203 0.73 -2.6 233,316 - PfGW456L13_203 0.73 -2.8 233,316 - PfGW456L13_203 0.73 -3.5 233,316 - PfGW456L13_203 0.73 -0.2 233,427 - PfGW456L13_203 0.83 -1.9 233,427 - PfGW456L13_203 0.83 -3.5 233,427 - PfGW456L13_203 0.83 -2.5 233,540 + -0.5 233,668 - -1.5 233,692 + +0.3 233,692 + -2.0 233,692 + -1.7 233,692 + -1.2 233,693 - -4.1 233,693 - +0.5 233,693 - -0.1 233,693 - -0.1 233,803 - PfGW456L13_204 0.11 -0.6 233,803 - PfGW456L13_204 0.11 -1.4 233,806 - PfGW456L13_204 0.12 +0.7 233,815 + PfGW456L13_204 0.12 -1.7 233,816 - PfGW456L13_204 0.12 -1.7 233,816 - PfGW456L13_204 0.12 -0.4 233,816 - PfGW456L13_204 0.12 -2.2 233,816 - PfGW456L13_204 0.12 +0.5 233,816 - PfGW456L13_204 0.12 -4.8 233,817 + PfGW456L13_204 0.12 -0.8 233,818 - PfGW456L13_204 0.12 -1.0 233,818 - PfGW456L13_204 0.12 -0.4 233,818 - PfGW456L13_204 0.12 -2.0 233,818 - PfGW456L13_204 0.12 -0.0 233,818 - PfGW456L13_204 0.12 -0.0 234,247 - PfGW456L13_204 0.37 -2.6 234,294 + PfGW456L13_204 0.39 -1.5 234,294 + PfGW456L13_204 0.39 -2.5 234,294 + PfGW456L13_204 0.39 +0.9 234,294 + PfGW456L13_204 0.39 -1.3 234,295 - PfGW456L13_204 0.39 -0.2 234,295 - PfGW456L13_204 0.39 +0.9 234,295 - PfGW456L13_204 0.39 -0.2 234,295 - PfGW456L13_204 0.39 +0.3 234,295 - PfGW456L13_204 0.39 -2.5 234,295 - PfGW456L13_204 0.39 -2.6 234,295 - PfGW456L13_204 0.39 +0.0 234,295 - PfGW456L13_204 0.39 -2.0 234,295 - PfGW456L13_204 0.39 +0.2 234,418 - PfGW456L13_204 0.46 -0.4 234,418 - PfGW456L13_204 0.46 +1.3 234,457 - PfGW456L13_204 0.49 -1.2 234,457 - PfGW456L13_204 0.49 +0.5 234,457 - PfGW456L13_204 0.49 -1.1 234,457 - PfGW456L13_204 0.49 -0.6 234,514 - PfGW456L13_204 0.52 +1.0 234,522 + PfGW456L13_204 0.52 +0.9 234,522 + PfGW456L13_204 0.52 +0.2 234,522 + PfGW456L13_204 0.52 -0.6 234,522 + PfGW456L13_204 0.52 -2.3 234,522 + PfGW456L13_204 0.52 +1.9 234,522 + PfGW456L13_204 0.52 +1.0 234,523 - PfGW456L13_204 0.52 -3.7 234,523 - PfGW456L13_204 0.52 -4.1 234,523 - PfGW456L13_204 0.52 -3.5 234,523 - PfGW456L13_204 0.52 -4.5 234,523 - PfGW456L13_204 0.52 -1.8 234,523 - PfGW456L13_204 0.52 -2.9 234,523 - PfGW456L13_204 0.52 +0.9 234,523 - PfGW456L13_204 0.52 -3.4 234,523 - PfGW456L13_204 0.52 +0.3 234,523 - PfGW456L13_204 0.52 -2.9 234,523 - PfGW456L13_204 0.52 -2.2 234,523 - PfGW456L13_204 0.52 -0.2 234,588 + PfGW456L13_204 0.56 +0.2 234,588 + PfGW456L13_204 0.56 -0.0 234,588 + PfGW456L13_204 0.56 +1.0 234,589 - PfGW456L13_204 0.56 -3.9 234,589 - PfGW456L13_204 0.56 -0.5 234,589 - PfGW456L13_204 0.56 -0.9 234,589 - PfGW456L13_204 0.56 +0.3 234,589 - PfGW456L13_204 0.56 -2.4 234,589 - PfGW456L13_204 0.56 -3.6 234,589 - PfGW456L13_204 0.56 -1.0 234,589 - PfGW456L13_204 0.56 -0.0 234,589 - PfGW456L13_204 0.56 -0.3 234,589 - PfGW456L13_204 0.56 -0.8 234,589 - PfGW456L13_204 0.56 +0.2 234,591 + PfGW456L13_204 0.56 +1.2 234,591 + PfGW456L13_204 0.56 +1.9 234,591 + PfGW456L13_204 0.56 -2.9 234,592 - PfGW456L13_204 0.56 -1.5 234,592 - PfGW456L13_204 0.56 -0.6
Or see this region's nucleotide sequence