Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1479

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1477 and PfGW456L13_1478 are separated by 37 nucleotidesPfGW456L13_1478 and PfGW456L13_1479 overlap by 8 nucleotidesPfGW456L13_1479 and PfGW456L13_1480 are separated by 168 nucleotides PfGW456L13_1477 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 1,629,573 to 1,632,404 _1477 PfGW456L13_1478 - Lipoprotein signal peptidase (EC 3.4.23.36), at 1,632,442 to 1,632,909 _1478 PfGW456L13_1479 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 1,632,902 to 1,633,354 _1479 PfGW456L13_1480 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 1,633,523 to 1,634,470 _1480 Position (kb) 1632 1633 1634Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1632.867 kb on + strandat 1632.915 kb on + strandat 1632.915 kb on + strandat 1632.915 kb on + strandat 1633.231 kb on + strand, within PfGW456L13_1479at 1633.326 kb on + strandat 1633.326 kb on + strandat 1633.326 kb on + strandat 1633.326 kb on + strandat 1633.352 kb on + strandat 1633.352 kb on + strandat 1633.352 kb on + strandat 1633.417 kb on + strandat 1633.431 kb on + strandat 1633.431 kb on + strandat 1633.437 kb on + strandat 1633.437 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,632,867 + -3.3
1,632,915 + -3.1
1,632,915 + -1.9
1,632,915 + -2.0
1,633,231 + PfGW456L13_1479 0.73 -3.9
1,633,326 + -1.5
1,633,326 + -3.1
1,633,326 + -3.0
1,633,326 + -2.2
1,633,352 + +1.1
1,633,352 + -0.6
1,633,352 + +0.3
1,633,417 + -2.0
1,633,431 + +0.6
1,633,431 + +0.5
1,633,437 + +0.6
1,633,437 + +1.1

Or see this region's nucleotide sequence