Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3937

Experiment: m.b. Dimethyl Sulfoxide 8 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3936 and Echvi_3937 are separated by 165 nucleotidesEchvi_3937 and Echvi_3938 are separated by 211 nucleotidesEchvi_3938 and Echvi_3939 are separated by 278 nucleotides Echvi_3936: Echvi_3936 - Lactate dehydrogenase and related dehydrogenases, at 4,713,947 to 4,714,939 _3936 Echvi_3937: Echvi_3937 - hypothetical protein, at 4,715,105 to 4,715,287 _3937 Echvi_3938: Echvi_3938 - hypothetical protein, at 4,715,499 to 4,715,888 _3938 Echvi_3939: Echvi_3939 - hypothetical protein, at 4,716,167 to 4,718,650 _3939 Position (kb) 4715 4716Strain fitness (log2 ratio) -2 -1 0 1at 4714.121 kb on - strand, within Echvi_3936at 4714.305 kb on + strand, within Echvi_3936at 4714.305 kb on + strand, within Echvi_3936at 4714.306 kb on - strand, within Echvi_3936at 4714.306 kb on - strand, within Echvi_3936at 4714.306 kb on - strand, within Echvi_3936at 4714.328 kb on + strand, within Echvi_3936at 4714.329 kb on - strand, within Echvi_3936at 4714.345 kb on + strand, within Echvi_3936at 4714.381 kb on - strand, within Echvi_3936at 4714.419 kb on + strand, within Echvi_3936at 4714.419 kb on + strand, within Echvi_3936at 4714.419 kb on + strand, within Echvi_3936at 4714.420 kb on - strand, within Echvi_3936at 4714.428 kb on + strand, within Echvi_3936at 4714.591 kb on + strand, within Echvi_3936at 4714.621 kb on + strand, within Echvi_3936at 4714.647 kb on + strand, within Echvi_3936at 4714.648 kb on - strand, within Echvi_3936at 4714.725 kb on - strand, within Echvi_3936at 4714.725 kb on - strand, within Echvi_3936at 4714.734 kb on + strand, within Echvi_3936at 4714.893 kb on - strandat 4714.897 kb on - strandat 4714.900 kb on + strandat 4714.900 kb on + strandat 4714.900 kb on + strandat 4714.900 kb on + strandat 4714.900 kb on + strandat 4714.900 kb on + strandat 4714.900 kb on + strandat 4714.900 kb on + strandat 4714.901 kb on - strandat 4714.901 kb on - strandat 4714.901 kb on - strandat 4714.901 kb on - strandat 4714.901 kb on - strandat 4714.901 kb on - strandat 4714.901 kb on - strandat 4714.901 kb on - strandat 4714.943 kb on + strandat 4714.944 kb on - strandat 4714.944 kb on - strandat 4714.953 kb on - strandat 4714.979 kb on - strandat 4715.000 kb on + strandat 4715.010 kb on + strandat 4715.011 kb on - strandat 4715.029 kb on + strandat 4715.032 kb on + strandat 4715.033 kb on - strandat 4715.033 kb on - strandat 4715.053 kb on + strandat 4715.053 kb on + strandat 4715.054 kb on - strandat 4715.065 kb on - strandat 4715.095 kb on + strandat 4715.120 kb on - strandat 4715.149 kb on - strand, within Echvi_3937at 4715.150 kb on + strand, within Echvi_3937at 4715.150 kb on + strand, within Echvi_3937at 4715.150 kb on + strand, within Echvi_3937at 4715.151 kb on - strand, within Echvi_3937at 4715.151 kb on - strand, within Echvi_3937at 4715.151 kb on - strand, within Echvi_3937at 4715.151 kb on - strand, within Echvi_3937at 4715.151 kb on - strand, within Echvi_3937at 4715.151 kb on - strand, within Echvi_3937at 4715.191 kb on - strand, within Echvi_3937at 4715.297 kb on + strandat 4715.359 kb on + strandat 4715.411 kb on + strandat 4715.411 kb on + strandat 4715.411 kb on + strandat 4715.411 kb on + strandat 4715.498 kb on + strandat 4715.565 kb on + strand, within Echvi_3938at 4715.747 kb on - strand, within Echvi_3938at 4715.801 kb on + strand, within Echvi_3938at 4715.841 kb on - strand, within Echvi_3938at 4715.879 kb on - strandat 4715.879 kb on - strandat 4715.882 kb on + strandat 4715.887 kb on - strandat 4715.928 kb on + strandat 4715.946 kb on + strandat 4715.948 kb on + strandat 4715.952 kb on - strandat 4715.952 kb on - strandat 4715.958 kb on + strandat 4716.014 kb on + strandat 4716.053 kb on - strandat 4716.069 kb on + strandat 4716.145 kb on + strandat 4716.160 kb on + strandat 4716.168 kb on + strandat 4716.168 kb on + strandat 4716.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 8 vol%
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4,714,121 - Echvi_3936 0.18 -0.7
4,714,305 + Echvi_3936 0.36 -0.5
4,714,305 + Echvi_3936 0.36 -0.5
4,714,306 - Echvi_3936 0.36 -0.4
4,714,306 - Echvi_3936 0.36 -1.6
4,714,306 - Echvi_3936 0.36 +0.6
4,714,328 + Echvi_3936 0.38 -0.1
4,714,329 - Echvi_3936 0.38 +0.4
4,714,345 + Echvi_3936 0.40 -0.4
4,714,381 - Echvi_3936 0.44 -0.4
4,714,419 + Echvi_3936 0.48 -0.1
4,714,419 + Echvi_3936 0.48 +0.3
4,714,419 + Echvi_3936 0.48 -0.3
4,714,420 - Echvi_3936 0.48 +0.5
4,714,428 + Echvi_3936 0.48 -1.7
4,714,591 + Echvi_3936 0.65 -1.3
4,714,621 + Echvi_3936 0.68 -0.2
4,714,647 + Echvi_3936 0.70 +0.1
4,714,648 - Echvi_3936 0.71 -0.6
4,714,725 - Echvi_3936 0.78 -0.2
4,714,725 - Echvi_3936 0.78 +0.7
4,714,734 + Echvi_3936 0.79 +1.3
4,714,893 - -0.1
4,714,897 - -1.1
4,714,900 + +0.4
4,714,900 + +0.2
4,714,900 + +0.4
4,714,900 + +0.3
4,714,900 + -0.2
4,714,900 + -1.0
4,714,900 + -0.1
4,714,900 + -0.5
4,714,901 - -0.9
4,714,901 - -0.1
4,714,901 - +0.0
4,714,901 - +0.9
4,714,901 - -1.1
4,714,901 - -0.1
4,714,901 - -0.7
4,714,901 - +0.2
4,714,943 + +0.4
4,714,944 - -0.0
4,714,944 - +0.9
4,714,953 - +0.8
4,714,979 - +0.8
4,715,000 + +0.2
4,715,010 + +0.0
4,715,011 - -0.3
4,715,029 + +0.2
4,715,032 + +0.6
4,715,033 - -0.1
4,715,033 - -0.0
4,715,053 + +0.6
4,715,053 + -0.2
4,715,054 - +0.2
4,715,065 - +0.1
4,715,095 + -0.1
4,715,120 - +0.7
4,715,149 - Echvi_3937 0.24 -0.6
4,715,150 + Echvi_3937 0.25 -1.0
4,715,150 + Echvi_3937 0.25 -1.4
4,715,150 + Echvi_3937 0.25 -0.6
4,715,151 - Echvi_3937 0.25 -1.5
4,715,151 - Echvi_3937 0.25 -0.3
4,715,151 - Echvi_3937 0.25 -0.9
4,715,151 - Echvi_3937 0.25 +0.2
4,715,151 - Echvi_3937 0.25 -0.2
4,715,151 - Echvi_3937 0.25 -0.1
4,715,191 - Echvi_3937 0.47 -1.4
4,715,297 + -0.2
4,715,359 + -1.4
4,715,411 + -0.6
4,715,411 + -0.8
4,715,411 + -2.0
4,715,411 + -0.4
4,715,498 + -1.3
4,715,565 + Echvi_3938 0.17 -0.5
4,715,747 - Echvi_3938 0.64 -0.3
4,715,801 + Echvi_3938 0.77 -1.6
4,715,841 - Echvi_3938 0.88 -0.4
4,715,879 - +0.4
4,715,879 - -0.7
4,715,882 + -0.1
4,715,887 - -0.4
4,715,928 + -0.7
4,715,946 + +0.2
4,715,948 + +0.4
4,715,952 - -0.3
4,715,952 - -0.8
4,715,958 + +0.2
4,716,014 + -1.4
4,716,053 - +0.2
4,716,069 + -0.5
4,716,145 + -1.4
4,716,160 + +0.1
4,716,168 + +0.3
4,716,168 + -0.7
4,716,169 - +0.4

Or see this region's nucleotide sequence