Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3823

Experiment: m.b. Dimethyl Sulfoxide 8 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_3822 and Echvi_3823 are separated by 198 nucleotidesEchvi_3823 and Echvi_3824 are separated by 498 nucleotidesEchvi_3824 and Echvi_3825 are separated by 209 nucleotides Echvi_3822: Echvi_3822 - NAD-dependent aldehyde dehydrogenases, at 4,566,297 to 4,567,658 _3822 Echvi_3823: Echvi_3823 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit, at 4,567,857 to 4,568,837 _3823 Echvi_3824: Echvi_3824 - hypothetical protein, at 4,569,336 to 4,569,521 _3824 Echvi_3825: Echvi_3825 - hypothetical protein, at 4,569,731 to 4,570,966 _3825 Position (kb) 4567 4568 4569Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4566.889 kb on + strand, within Echvi_3822at 4566.889 kb on + strand, within Echvi_3822at 4566.890 kb on - strand, within Echvi_3822at 4567.098 kb on - strand, within Echvi_3822at 4567.116 kb on + strand, within Echvi_3822at 4567.116 kb on + strand, within Echvi_3822at 4567.140 kb on - strand, within Echvi_3822at 4567.194 kb on + strand, within Echvi_3822at 4567.280 kb on - strand, within Echvi_3822at 4567.313 kb on + strand, within Echvi_3822at 4567.324 kb on - strand, within Echvi_3822at 4567.495 kb on + strand, within Echvi_3822at 4567.496 kb on - strand, within Echvi_3822at 4567.638 kb on - strandat 4567.647 kb on + strandat 4567.647 kb on + strandat 4567.666 kb on + strandat 4567.667 kb on - strandat 4567.699 kb on + strandat 4567.699 kb on + strandat 4567.699 kb on + strandat 4567.699 kb on + strandat 4567.704 kb on - strandat 4567.788 kb on - strandat 4567.807 kb on + strandat 4567.807 kb on + strandat 4568.827 kb on - strandat 4568.827 kb on - strandat 4568.835 kb on + strandat 4568.835 kb on + strandat 4568.836 kb on - strandat 4568.907 kb on + strandat 4568.908 kb on - strandat 4568.908 kb on - strandat 4568.908 kb on - strandat 4569.015 kb on + strandat 4569.016 kb on - strandat 4569.018 kb on + strandat 4569.018 kb on + strandat 4569.039 kb on + strandat 4569.111 kb on - strandat 4569.239 kb on - strandat 4569.255 kb on + strandat 4569.260 kb on + strandat 4569.260 kb on + strandat 4569.330 kb on - strandat 4569.365 kb on + strand, within Echvi_3824at 4569.428 kb on - strand, within Echvi_3824at 4569.428 kb on - strand, within Echvi_3824at 4569.430 kb on - strand, within Echvi_3824at 4569.430 kb on - strand, within Echvi_3824at 4569.430 kb on - strand, within Echvi_3824at 4569.430 kb on - strand, within Echvi_3824at 4569.430 kb on - strand, within Echvi_3824at 4569.599 kb on + strandat 4569.599 kb on + strandat 4569.616 kb on + strandat 4569.616 kb on + strandat 4569.617 kb on - strandat 4569.622 kb on - strandat 4569.656 kb on + strandat 4569.656 kb on + strandat 4569.671 kb on + strandat 4569.766 kb on + strandat 4569.766 kb on + strandat 4569.812 kb on + strandat 4569.812 kb on + strandat 4569.818 kb on - strandat 4569.819 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 8 vol%
remove
4,566,889 + Echvi_3822 0.43 +0.4
4,566,889 + Echvi_3822 0.43 +0.5
4,566,890 - Echvi_3822 0.44 -0.8
4,567,098 - Echvi_3822 0.59 -1.2
4,567,116 + Echvi_3822 0.60 -0.1
4,567,116 + Echvi_3822 0.60 +1.0
4,567,140 - Echvi_3822 0.62 +0.7
4,567,194 + Echvi_3822 0.66 -0.0
4,567,280 - Echvi_3822 0.72 +0.3
4,567,313 + Echvi_3822 0.75 -1.6
4,567,324 - Echvi_3822 0.75 -0.5
4,567,495 + Echvi_3822 0.88 +0.6
4,567,496 - Echvi_3822 0.88 -0.6
4,567,638 - -0.1
4,567,647 + -0.2
4,567,647 + +0.0
4,567,666 + +0.3
4,567,667 - -0.3
4,567,699 + -0.9
4,567,699 + +1.3
4,567,699 + -0.8
4,567,699 + -0.8
4,567,704 - +0.1
4,567,788 - +2.2
4,567,807 + +0.2
4,567,807 + -0.0
4,568,827 - +0.0
4,568,827 - -0.9
4,568,835 + -0.7
4,568,835 + -0.7
4,568,836 - -1.3
4,568,907 + +2.0
4,568,908 - +0.3
4,568,908 - +0.6
4,568,908 - -0.1
4,569,015 + +1.2
4,569,016 - +0.9
4,569,018 + +1.2
4,569,018 + +0.3
4,569,039 + +0.7
4,569,111 - +0.2
4,569,239 - -1.9
4,569,255 + -0.1
4,569,260 + -0.5
4,569,260 + -0.1
4,569,330 - -0.9
4,569,365 + Echvi_3824 0.16 +0.3
4,569,428 - Echvi_3824 0.49 +2.5
4,569,428 - Echvi_3824 0.49 +3.0
4,569,430 - Echvi_3824 0.51 +3.8
4,569,430 - Echvi_3824 0.51 -0.7
4,569,430 - Echvi_3824 0.51 -0.7
4,569,430 - Echvi_3824 0.51 +1.2
4,569,430 - Echvi_3824 0.51 +0.9
4,569,599 + -0.5
4,569,599 + -0.2
4,569,616 + -0.1
4,569,616 + -0.0
4,569,617 - +0.4
4,569,622 - -2.1
4,569,656 + +1.4
4,569,656 + +1.4
4,569,671 + +0.1
4,569,766 + -0.1
4,569,766 + -0.1
4,569,812 + +1.4
4,569,812 + +0.1
4,569,818 - +0.2
4,569,819 + -2.8

Or see this region's nucleotide sequence