Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0303

Experiment: m.b. Dimethyl Sulfoxide 8 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0302 and Echvi_0303 are separated by 110 nucleotidesEchvi_0303 and Echvi_0304 are separated by 144 nucleotides Echvi_0302: Echvi_0302 - amidohydrolase, at 312,863 to 314,161 _0302 Echvi_0303: Echvi_0303 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 314,272 to 314,940 _0303 Echvi_0304: Echvi_0304 - purine nucleoside phosphorylase I, inosine and guanosine-specific, at 315,085 to 315,933 _0304 Position (kb) 314 315Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 313.493 kb on - strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.642 kb on + strand, within Echvi_0302at 313.704 kb on + strand, within Echvi_0302at 313.705 kb on - strand, within Echvi_0302at 313.757 kb on + strand, within Echvi_0302at 313.851 kb on + strand, within Echvi_0302at 313.851 kb on + strand, within Echvi_0302at 313.852 kb on - strand, within Echvi_0302at 313.891 kb on + strand, within Echvi_0302at 313.947 kb on - strand, within Echvi_0302at 313.982 kb on + strand, within Echvi_0302at 314.141 kb on + strandat 314.141 kb on + strandat 314.159 kb on + strandat 314.171 kb on + strandat 314.242 kb on + strandat 314.242 kb on + strandat 314.243 kb on - strandat 314.244 kb on + strandat 314.245 kb on - strandat 314.245 kb on - strandat 314.245 kb on - strandat 314.248 kb on + strandat 314.273 kb on + strandat 314.287 kb on + strandat 314.287 kb on + strandat 314.364 kb on - strand, within Echvi_0303at 314.508 kb on + strand, within Echvi_0303at 314.508 kb on + strand, within Echvi_0303at 314.509 kb on - strand, within Echvi_0303at 314.509 kb on - strand, within Echvi_0303at 314.565 kb on + strand, within Echvi_0303at 314.566 kb on - strand, within Echvi_0303at 314.589 kb on + strand, within Echvi_0303at 314.743 kb on - strand, within Echvi_0303at 314.743 kb on - strand, within Echvi_0303at 314.781 kb on + strand, within Echvi_0303at 314.782 kb on - strand, within Echvi_0303at 314.847 kb on + strand, within Echvi_0303at 314.878 kb on - strandat 314.945 kb on + strandat 314.945 kb on + strandat 314.945 kb on + strandat 314.946 kb on - strandat 314.946 kb on - strandat 315.022 kb on + strandat 315.023 kb on - strandat 315.031 kb on - strandat 315.120 kb on + strandat 315.121 kb on - strandat 315.124 kb on - strandat 315.205 kb on + strand, within Echvi_0304at 315.205 kb on + strand, within Echvi_0304at 315.206 kb on - strand, within Echvi_0304at 315.342 kb on + strand, within Echvi_0304at 315.363 kb on - strand, within Echvi_0304at 315.515 kb on - strand, within Echvi_0304at 315.515 kb on - strand, within Echvi_0304at 315.516 kb on + strand, within Echvi_0304at 315.516 kb on + strand, within Echvi_0304at 315.516 kb on + strand, within Echvi_0304at 315.517 kb on - strand, within Echvi_0304at 315.646 kb on - strand, within Echvi_0304at 315.650 kb on + strand, within Echvi_0304at 315.651 kb on - strand, within Echvi_0304at 315.659 kb on + strand, within Echvi_0304at 315.659 kb on + strand, within Echvi_0304at 315.659 kb on + strand, within Echvi_0304at 315.744 kb on + strand, within Echvi_0304at 315.774 kb on - strand, within Echvi_0304at 315.774 kb on - strand, within Echvi_0304at 315.807 kb on + strand, within Echvi_0304at 315.808 kb on - strand, within Echvi_0304at 315.808 kb on - strand, within Echvi_0304at 315.830 kb on - strand, within Echvi_0304at 315.830 kb on - strand, within Echvi_0304at 315.830 kb on - strand, within Echvi_0304at 315.830 kb on - strand, within Echvi_0304at 315.832 kb on + strand, within Echvi_0304at 315.833 kb on - strand, within Echvi_0304at 315.833 kb on - strand, within Echvi_0304at 315.876 kb on - strandat 315.876 kb on - strandat 315.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 8 vol%
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313,493 - Echvi_0302 0.48 -0.0
313,493 - Echvi_0302 0.48 -0.5
313,493 - Echvi_0302 0.48 -1.2
313,493 - Echvi_0302 0.48 -1.1
313,642 + Echvi_0302 0.60 -1.8
313,704 + Echvi_0302 0.65 -1.4
313,705 - Echvi_0302 0.65 -0.1
313,757 + Echvi_0302 0.69 -0.4
313,851 + Echvi_0302 0.76 +0.0
313,851 + Echvi_0302 0.76 +0.2
313,852 - Echvi_0302 0.76 -0.1
313,891 + Echvi_0302 0.79 +0.6
313,947 - Echvi_0302 0.83 -1.8
313,982 + Echvi_0302 0.86 -1.3
314,141 + +0.8
314,141 + +0.0
314,159 + +0.3
314,171 + +3.4
314,242 + +0.3
314,242 + +0.3
314,243 - -1.6
314,244 + -0.1
314,245 - +0.6
314,245 - -0.1
314,245 - -0.1
314,248 + -0.1
314,273 + +1.3
314,287 + +1.1
314,287 + +0.2
314,364 - Echvi_0303 0.14 +0.5
314,508 + Echvi_0303 0.35 -1.4
314,508 + Echvi_0303 0.35 -0.4
314,509 - Echvi_0303 0.35 -1.0
314,509 - Echvi_0303 0.35 -1.0
314,565 + Echvi_0303 0.44 -1.3
314,566 - Echvi_0303 0.44 -0.5
314,589 + Echvi_0303 0.47 +0.2
314,743 - Echvi_0303 0.70 -0.5
314,743 - Echvi_0303 0.70 +0.1
314,781 + Echvi_0303 0.76 -0.9
314,782 - Echvi_0303 0.76 -2.0
314,847 + Echvi_0303 0.86 +0.3
314,878 - +0.9
314,945 + -0.2
314,945 + +1.6
314,945 + +1.0
314,946 - -2.0
314,946 - +0.0
315,022 + -0.3
315,023 - +0.4
315,031 - +1.0
315,120 + +2.2
315,121 - -1.4
315,124 - -0.1
315,205 + Echvi_0304 0.14 +0.5
315,205 + Echvi_0304 0.14 +1.0
315,206 - Echvi_0304 0.14 -3.0
315,342 + Echvi_0304 0.30 +1.3
315,363 - Echvi_0304 0.33 -0.5
315,515 - Echvi_0304 0.51 +0.2
315,515 - Echvi_0304 0.51 +0.9
315,516 + Echvi_0304 0.51 +1.1
315,516 + Echvi_0304 0.51 +0.6
315,516 + Echvi_0304 0.51 -0.2
315,517 - Echvi_0304 0.51 -0.5
315,646 - Echvi_0304 0.66 -0.3
315,650 + Echvi_0304 0.67 +0.4
315,651 - Echvi_0304 0.67 -1.8
315,659 + Echvi_0304 0.68 -0.2
315,659 + Echvi_0304 0.68 -0.1
315,659 + Echvi_0304 0.68 -0.4
315,744 + Echvi_0304 0.78 -0.9
315,774 - Echvi_0304 0.81 -2.3
315,774 - Echvi_0304 0.81 -1.2
315,807 + Echvi_0304 0.85 -0.4
315,808 - Echvi_0304 0.85 -1.0
315,808 - Echvi_0304 0.85 +0.3
315,830 - Echvi_0304 0.88 -1.5
315,830 - Echvi_0304 0.88 +2.6
315,830 - Echvi_0304 0.88 -1.4
315,830 - Echvi_0304 0.88 +0.6
315,832 + Echvi_0304 0.88 +1.6
315,833 - Echvi_0304 0.88 -1.4
315,833 - Echvi_0304 0.88 +1.4
315,876 - -0.1
315,876 - -2.5
315,906 - -0.5

Or see this region's nucleotide sequence