Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0155

Experiment: m.b. Dimethyl Sulfoxide 8 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0154 and Echvi_0155 are separated by 0 nucleotidesEchvi_0155 and Echvi_0156 are separated by 8 nucleotidesEchvi_0156 and Echvi_0157 overlap by 8 nucleotides Echvi_0154: Echvi_0154 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 156,184 to 157,167 _0154 Echvi_0155: Echvi_0155 - ketose-bisphosphate aldolases, at 157,168 to 157,992 _0155 Echvi_0156: Echvi_0156 - Sugar kinases, ribokinase family, at 158,001 to 158,945 _0156 Echvi_0157: Echvi_0157 - hexose kinase, 1-phosphofructokinase family, at 158,938 to 159,861 _0157 Position (kb) 157 158Strain fitness (log2 ratio) -2 -1 0 1 2at 156.218 kb on + strandat 156.224 kb on - strandat 156.293 kb on - strand, within Echvi_0154at 156.398 kb on + strand, within Echvi_0154at 156.399 kb on - strand, within Echvi_0154at 156.399 kb on - strand, within Echvi_0154at 156.417 kb on - strand, within Echvi_0154at 156.427 kb on - strand, within Echvi_0154at 156.436 kb on + strand, within Echvi_0154at 156.436 kb on + strand, within Echvi_0154at 156.436 kb on + strand, within Echvi_0154at 156.464 kb on - strand, within Echvi_0154at 156.512 kb on + strand, within Echvi_0154at 156.516 kb on + strand, within Echvi_0154at 156.516 kb on + strand, within Echvi_0154at 156.517 kb on - strand, within Echvi_0154at 156.584 kb on - strand, within Echvi_0154at 156.635 kb on + strand, within Echvi_0154at 156.636 kb on - strand, within Echvi_0154at 156.663 kb on + strand, within Echvi_0154at 156.663 kb on + strandat 156.669 kb on - strand, within Echvi_0154at 156.669 kb on - strand, within Echvi_0154at 156.684 kb on + strand, within Echvi_0154at 156.689 kb on + strand, within Echvi_0154at 156.690 kb on - strand, within Echvi_0154at 156.984 kb on + strand, within Echvi_0154at 157.133 kb on - strandat 157.133 kb on - strandat 157.138 kb on + strandat 157.151 kb on - strandat 157.152 kb on + strandat 157.152 kb on + strandat 157.152 kb on + strandat 157.199 kb on + strandat 157.200 kb on - strandat 157.276 kb on + strand, within Echvi_0155at 157.277 kb on - strand, within Echvi_0155at 157.592 kb on + strand, within Echvi_0155at 157.592 kb on + strand, within Echvi_0155at 157.592 kb on + strand, within Echvi_0155at 157.609 kb on + strand, within Echvi_0155at 157.622 kb on + strand, within Echvi_0155at 157.626 kb on + strand, within Echvi_0155at 157.626 kb on + strand, within Echvi_0155at 157.661 kb on - strand, within Echvi_0155at 157.661 kb on - strand, within Echvi_0155at 157.784 kb on + strand, within Echvi_0155at 157.785 kb on - strand, within Echvi_0155at 157.835 kb on + strand, within Echvi_0155at 158.002 kb on + strandat 158.041 kb on - strandat 158.049 kb on + strandat 158.057 kb on + strandat 158.058 kb on - strandat 158.084 kb on + strandat 158.160 kb on - strand, within Echvi_0156at 158.200 kb on - strand, within Echvi_0156at 158.215 kb on - strand, within Echvi_0156at 158.327 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.379 kb on + strand, within Echvi_0156at 158.380 kb on - strand, within Echvi_0156at 158.381 kb on + strandat 158.381 kb on + strand, within Echvi_0156at 158.381 kb on + strand, within Echvi_0156at 158.382 kb on - strand, within Echvi_0156at 158.382 kb on - strand, within Echvi_0156at 158.382 kb on - strand, within Echvi_0156at 158.385 kb on + strand, within Echvi_0156at 158.385 kb on + strand, within Echvi_0156at 158.386 kb on - strand, within Echvi_0156at 158.496 kb on - strand, within Echvi_0156at 158.498 kb on + strand, within Echvi_0156at 158.611 kb on + strand, within Echvi_0156at 158.615 kb on + strand, within Echvi_0156at 158.615 kb on + strand, within Echvi_0156at 158.615 kb on + strand, within Echvi_0156at 158.639 kb on - strand, within Echvi_0156at 158.666 kb on + strand, within Echvi_0156at 158.666 kb on + strand, within Echvi_0156at 158.666 kb on + strand, within Echvi_0156at 158.965 kb on + strandat 158.966 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 8 vol%
remove
156,218 + +0.9
156,224 - -0.2
156,293 - Echvi_0154 0.11 +0.5
156,398 + Echvi_0154 0.22 +0.6
156,399 - Echvi_0154 0.22 +0.4
156,399 - Echvi_0154 0.22 -0.3
156,417 - Echvi_0154 0.24 -0.1
156,427 - Echvi_0154 0.25 -0.6
156,436 + Echvi_0154 0.26 -0.8
156,436 + Echvi_0154 0.26 +0.4
156,436 + Echvi_0154 0.26 +0.6
156,464 - Echvi_0154 0.28 -1.0
156,512 + Echvi_0154 0.33 -0.7
156,516 + Echvi_0154 0.34 -0.5
156,516 + Echvi_0154 0.34 +1.6
156,517 - Echvi_0154 0.34 +1.6
156,584 - Echvi_0154 0.41 -0.4
156,635 + Echvi_0154 0.46 -0.2
156,636 - Echvi_0154 0.46 -0.6
156,663 + Echvi_0154 0.49 +1.0
156,663 + +1.2
156,669 - Echvi_0154 0.49 -1.2
156,669 - Echvi_0154 0.49 -0.1
156,684 + Echvi_0154 0.51 -0.1
156,689 + Echvi_0154 0.51 +1.2
156,690 - Echvi_0154 0.51 -0.2
156,984 + Echvi_0154 0.81 -1.6
157,133 - -0.4
157,133 - +0.3
157,138 + -0.2
157,151 - -0.4
157,152 + -0.7
157,152 + +0.4
157,152 + +0.7
157,199 + +0.2
157,200 - -1.1
157,276 + Echvi_0155 0.13 -0.0
157,277 - Echvi_0155 0.13 -0.7
157,592 + Echvi_0155 0.51 +0.3
157,592 + Echvi_0155 0.51 +0.1
157,592 + Echvi_0155 0.51 +0.0
157,609 + Echvi_0155 0.53 +0.0
157,622 + Echvi_0155 0.55 +0.0
157,626 + Echvi_0155 0.56 +0.3
157,626 + Echvi_0155 0.56 +0.0
157,661 - Echvi_0155 0.60 +0.6
157,661 - Echvi_0155 0.60 -1.4
157,784 + Echvi_0155 0.75 +0.6
157,785 - Echvi_0155 0.75 +0.0
157,835 + Echvi_0155 0.81 +0.7
158,002 + +0.7
158,041 - +1.0
158,049 + +1.9
158,057 + +0.3
158,058 - -1.4
158,084 + -0.0
158,160 - Echvi_0156 0.17 +0.0
158,200 - Echvi_0156 0.21 -0.3
158,215 - Echvi_0156 0.23 -0.4
158,327 + Echvi_0156 0.34 -0.3
158,379 + Echvi_0156 0.40 -1.6
158,379 + Echvi_0156 0.40 -0.7
158,379 + Echvi_0156 0.40 -0.7
158,379 + Echvi_0156 0.40 +0.1
158,379 + Echvi_0156 0.40 -0.1
158,380 - Echvi_0156 0.40 -0.1
158,381 + +0.0
158,381 + Echvi_0156 0.40 +0.7
158,381 + Echvi_0156 0.40 +0.7
158,382 - Echvi_0156 0.40 -0.3
158,382 - Echvi_0156 0.40 -1.6
158,382 - Echvi_0156 0.40 -0.3
158,385 + Echvi_0156 0.41 -0.2
158,385 + Echvi_0156 0.41 +1.3
158,386 - Echvi_0156 0.41 -2.3
158,496 - Echvi_0156 0.52 +0.6
158,498 + Echvi_0156 0.53 +0.3
158,611 + Echvi_0156 0.65 +0.7
158,615 + Echvi_0156 0.65 +0.0
158,615 + Echvi_0156 0.65 -0.5
158,615 + Echvi_0156 0.65 +0.1
158,639 - Echvi_0156 0.68 +0.7
158,666 + Echvi_0156 0.70 +0.3
158,666 + Echvi_0156 0.70 -1.1
158,666 + Echvi_0156 0.70 -0.3
158,965 + +0.0
158,966 - +0.3

Or see this region's nucleotide sequence