Strain Fitness in Agrobacterium fabrum C58 around Atu6084

Experiment: D-Saccharic potassium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6083 and Atu6084 are separated by 351 nucleotidesAtu6084 and Atu6085 are separated by 22 nucleotidesAtu6085 and Atu6086 are separated by 18 nucleotides Atu6083: Atu6083 - conserved hypothetical protein, at 98,863 to 101,373 Atu6083 Atu6084: Atu6084 - nitrilotriacetate monooxygenase, component A, at 101,725 to 103,077 Atu6084 Atu6085: Atu6085 - ABC transporter, substrate binding protein (nitrate/sulfonate), at 103,100 to 104,032 Atu6085 Atu6086: Atu6086 - ABC transporter, membrane spanning protein (nitrate/sulfonate), at 104,051 to 104,851 Atu6086 Position (kb) 101 102 103 104Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 100.744 kb on + strand, within Atu6083at 100.754 kb on + strand, within Atu6083at 100.816 kb on + strand, within Atu6083at 100.830 kb on + strand, within Atu6083at 100.842 kb on + strand, within Atu6083at 100.850 kb on - strand, within Atu6083at 100.868 kb on + strand, within Atu6083at 100.871 kb on - strand, within Atu6083at 100.881 kb on + strand, within Atu6083at 100.941 kb on + strand, within Atu6083at 100.946 kb on + strand, within Atu6083at 100.946 kb on + strand, within Atu6083at 100.946 kb on + strand, within Atu6083at 100.954 kb on - strand, within Atu6083at 101.101 kb on + strand, within Atu6083at 101.122 kb on - strand, within Atu6083at 101.122 kb on - strand, within Atu6083at 101.122 kb on - strand, within Atu6083at 101.241 kb on + strandat 101.247 kb on + strandat 101.247 kb on + strandat 101.255 kb on - strandat 101.255 kb on - strandat 101.255 kb on - strandat 101.264 kb on + strandat 101.272 kb on - strandat 101.274 kb on + strandat 101.283 kb on + strandat 101.375 kb on + strandat 101.376 kb on - strandat 101.445 kb on + strandat 101.481 kb on + strandat 101.489 kb on - strandat 101.489 kb on - strandat 101.489 kb on - strandat 101.506 kb on - strandat 101.508 kb on + strandat 101.516 kb on - strandat 101.516 kb on - strandat 101.710 kb on - strandat 101.758 kb on + strandat 101.760 kb on + strandat 101.760 kb on + strandat 101.761 kb on - strandat 101.817 kb on + strandat 101.817 kb on + strandat 101.817 kb on + strandat 101.825 kb on - strandat 101.825 kb on - strandat 101.825 kb on - strandat 101.825 kb on - strandat 101.845 kb on - strandat 101.880 kb on + strand, within Atu6084at 101.923 kb on + strand, within Atu6084at 101.928 kb on + strand, within Atu6084at 101.953 kb on + strand, within Atu6084at 101.953 kb on + strand, within Atu6084at 101.954 kb on - strand, within Atu6084at 101.960 kb on - strand, within Atu6084at 101.961 kb on - strand, within Atu6084at 101.961 kb on - strand, within Atu6084at 101.971 kb on - strand, within Atu6084at 101.973 kb on + strand, within Atu6084at 101.973 kb on + strand, within Atu6084at 101.999 kb on + strand, within Atu6084at 102.002 kb on - strand, within Atu6084at 102.012 kb on + strand, within Atu6084at 102.091 kb on + strand, within Atu6084at 102.091 kb on + strand, within Atu6084at 102.099 kb on - strand, within Atu6084at 102.100 kb on + strand, within Atu6084at 102.158 kb on + strand, within Atu6084at 102.170 kb on - strand, within Atu6084at 102.206 kb on - strand, within Atu6084at 102.210 kb on + strand, within Atu6084at 102.312 kb on - strand, within Atu6084at 102.349 kb on + strand, within Atu6084at 102.357 kb on - strand, within Atu6084at 102.357 kb on - strand, within Atu6084at 102.393 kb on + strand, within Atu6084at 102.401 kb on - strand, within Atu6084at 102.453 kb on - strand, within Atu6084at 102.476 kb on - strand, within Atu6084at 102.492 kb on + strand, within Atu6084at 102.526 kb on - strand, within Atu6084at 102.539 kb on - strand, within Atu6084at 102.599 kb on - strand, within Atu6084at 102.607 kb on - strand, within Atu6084at 102.672 kb on + strand, within Atu6084at 102.680 kb on - strand, within Atu6084at 102.814 kb on - strand, within Atu6084at 102.898 kb on + strand, within Atu6084at 102.901 kb on - strand, within Atu6084at 102.986 kb on + strandat 102.994 kb on - strandat 103.122 kb on + strandat 103.127 kb on + strandat 103.134 kb on + strandat 103.142 kb on - strandat 103.169 kb on + strandat 103.177 kb on - strandat 103.177 kb on - strandat 103.179 kb on + strandat 103.227 kb on + strand, within Atu6085at 103.237 kb on + strand, within Atu6085at 103.245 kb on - strand, within Atu6085at 103.245 kb on - strand, within Atu6085at 103.245 kb on - strand, within Atu6085at 103.279 kb on - strand, within Atu6085at 103.294 kb on + strand, within Atu6085at 103.325 kb on - strand, within Atu6085at 103.336 kb on - strand, within Atu6085at 103.346 kb on + strand, within Atu6085at 103.360 kb on - strand, within Atu6085at 103.391 kb on - strand, within Atu6085at 103.392 kb on - strand, within Atu6085at 103.439 kb on + strand, within Atu6085at 103.440 kb on - strand, within Atu6085at 103.506 kb on + strand, within Atu6085at 103.506 kb on + strand, within Atu6085at 103.514 kb on - strand, within Atu6085at 103.514 kb on - strand, within Atu6085at 103.514 kb on - strand, within Atu6085at 103.634 kb on + strand, within Atu6085at 103.634 kb on + strand, within Atu6085at 103.695 kb on + strand, within Atu6085at 103.698 kb on - strand, within Atu6085at 103.754 kb on + strand, within Atu6085at 103.867 kb on + strand, within Atu6085at 103.893 kb on + strand, within Atu6085at 103.893 kb on + strand, within Atu6085at 103.901 kb on - strand, within Atu6085at 103.901 kb on - strand, within Atu6085at 103.901 kb on - strand, within Atu6085at 103.923 kb on - strand, within Atu6085at 103.948 kb on + strandat 103.948 kb on + strandat 103.948 kb on + strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.956 kb on - strandat 103.985 kb on + strandat 103.986 kb on - strandat 104.013 kb on + strandat 104.013 kb on + strandat 104.013 kb on + strandat 104.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C)
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100,744 + Atu6083 0.75 +0.7
100,754 + Atu6083 0.75 +1.6
100,816 + Atu6083 0.78 +0.1
100,830 + Atu6083 0.78 -0.7
100,842 + Atu6083 0.79 -0.3
100,850 - Atu6083 0.79 +1.0
100,868 + Atu6083 0.80 -0.0
100,871 - Atu6083 0.80 +1.1
100,881 + Atu6083 0.80 -1.0
100,941 + Atu6083 0.83 +1.4
100,946 + Atu6083 0.83 +0.1
100,946 + Atu6083 0.83 +0.1
100,946 + Atu6083 0.83 -1.0
100,954 - Atu6083 0.83 +1.9
101,101 + Atu6083 0.89 +0.3
101,122 - Atu6083 0.90 -0.5
101,122 - Atu6083 0.90 -0.6
101,122 - Atu6083 0.90 -0.2
101,241 + +1.0
101,247 + -0.5
101,247 + -0.8
101,255 - +2.0
101,255 - -0.2
101,255 - +1.7
101,264 + +1.4
101,272 - +2.3
101,274 + -0.5
101,283 + +2.6
101,375 + +4.6
101,376 - +1.4
101,445 + +0.9
101,481 + -0.4
101,489 - -0.3
101,489 - -1.0
101,489 - +0.4
101,506 - +0.9
101,508 + -0.5
101,516 - +1.1
101,516 - +1.1
101,710 - +1.0
101,758 + -0.6
101,760 + +1.6
101,760 + -2.1
101,761 - +0.3
101,817 + -0.5
101,817 + +0.2
101,817 + -0.2
101,825 - +1.1
101,825 - +1.6
101,825 - -1.0
101,825 - -0.7
101,845 - +0.7
101,880 + Atu6084 0.11 +0.9
101,923 + Atu6084 0.15 -1.0
101,928 + Atu6084 0.15 -1.1
101,953 + Atu6084 0.17 -1.2
101,953 + Atu6084 0.17 +0.6
101,954 - Atu6084 0.17 +2.1
101,960 - Atu6084 0.17 -0.8
101,961 - Atu6084 0.17 +2.3
101,961 - Atu6084 0.17 -0.5
101,971 - Atu6084 0.18 +0.9
101,973 + Atu6084 0.18 -1.1
101,973 + Atu6084 0.18 -1.1
101,999 + Atu6084 0.20 +2.1
102,002 - Atu6084 0.20 +3.6
102,012 + Atu6084 0.21 -1.0
102,091 + Atu6084 0.27 -1.4
102,091 + Atu6084 0.27 +0.5
102,099 - Atu6084 0.28 +1.1
102,100 + Atu6084 0.28 +1.1
102,158 + Atu6084 0.32 -0.4
102,170 - Atu6084 0.33 +0.1
102,206 - Atu6084 0.36 +1.8
102,210 + Atu6084 0.36 +4.0
102,312 - Atu6084 0.43 +1.0
102,349 + Atu6084 0.46 +0.1
102,357 - Atu6084 0.47 -0.5
102,357 - Atu6084 0.47 +2.6
102,393 + Atu6084 0.49 +0.6
102,401 - Atu6084 0.50 -1.5
102,453 - Atu6084 0.54 -0.7
102,476 - Atu6084 0.56 +2.6
102,492 + Atu6084 0.57 -1.4
102,526 - Atu6084 0.59 -0.9
102,539 - Atu6084 0.60 -1.0
102,599 - Atu6084 0.65 -0.6
102,607 - Atu6084 0.65 -0.6
102,672 + Atu6084 0.70 -0.1
102,680 - Atu6084 0.71 -0.3
102,814 - Atu6084 0.80 +0.3
102,898 + Atu6084 0.87 +0.5
102,901 - Atu6084 0.87 +0.3
102,986 + +0.8
102,994 - +0.8
103,122 + -0.9
103,127 + +0.2
103,134 + -0.4
103,142 - +1.8
103,169 + +1.1
103,177 - +0.3
103,177 - +0.1
103,179 + +1.4
103,227 + Atu6085 0.14 -0.1
103,237 + Atu6085 0.15 -0.9
103,245 - Atu6085 0.16 +1.0
103,245 - Atu6085 0.16 +0.1
103,245 - Atu6085 0.16 +0.3
103,279 - Atu6085 0.19 -0.6
103,294 + Atu6085 0.21 +1.4
103,325 - Atu6085 0.24 +0.9
103,336 - Atu6085 0.25 +2.8
103,346 + Atu6085 0.26 +0.7
103,360 - Atu6085 0.28 +3.6
103,391 - Atu6085 0.31 +3.0
103,392 - Atu6085 0.31 +1.1
103,439 + Atu6085 0.36 -0.1
103,440 - Atu6085 0.36 -0.4
103,506 + Atu6085 0.44 -0.4
103,506 + Atu6085 0.44 +1.5
103,514 - Atu6085 0.44 -1.4
103,514 - Atu6085 0.44 -1.1
103,514 - Atu6085 0.44 +1.6
103,634 + Atu6085 0.57 -0.4
103,634 + Atu6085 0.57 +0.9
103,695 + Atu6085 0.64 -0.4
103,698 - Atu6085 0.64 +0.3
103,754 + Atu6085 0.70 +1.5
103,867 + Atu6085 0.82 +1.6
103,893 + Atu6085 0.85 -0.1
103,893 + Atu6085 0.85 +0.1
103,901 - Atu6085 0.86 +0.8
103,901 - Atu6085 0.86 -0.8
103,901 - Atu6085 0.86 +2.6
103,923 - Atu6085 0.88 -0.5
103,948 + -0.5
103,948 + +3.0
103,948 + +0.9
103,956 - -0.5
103,956 - +1.8
103,956 - -0.0
103,956 - -0.8
103,956 - +2.0
103,985 + +1.8
103,986 - -0.7
104,013 + +0.5
104,013 + -0.8
104,013 + +2.3
104,021 + -1.5

Or see this region's nucleotide sequence