Experiment: D-Saccharic potassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5478 and Atu5479 overlap by 4 nucleotides Atu5479 and Atu5480 are separated by 13 nucleotides Atu5480 and Atu5481 overlap by 4 nucleotides
Atu5478: Atu5478 - chloromuconate cycloisomerase, at 470,044 to 471,141
Atu5478
Atu5479: Atu5479 - acetylornithine deacetylase, at 471,138 to 472,301
Atu5479
Atu5480: Atu5480 - ABC transporter nucleotide binding/ATPase, at 472,315 to 473,079
Atu5480
Atu5481: Atu5481 - ABC transporter membrane spanning protein, at 473,076 to 473,804
Atu5481
Position (kb) 471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 470.307 kb on + strand, within Atu5478 at 470.435 kb on + strand, within Atu5478 at 470.443 kb on - strand, within Atu5478 at 470.498 kb on - strand, within Atu5478 at 470.498 kb on - strand, within Atu5478 at 470.501 kb on - strand, within Atu5478 at 470.546 kb on + strand, within Atu5478 at 470.559 kb on - strand, within Atu5478 at 470.588 kb on - strand, within Atu5478 at 470.626 kb on + strand, within Atu5478 at 470.661 kb on + strand, within Atu5478 at 470.662 kb on - strand, within Atu5478 at 470.669 kb on - strand, within Atu5478 at 470.726 kb on + strand, within Atu5478 at 470.726 kb on + strand, within Atu5478 at 470.734 kb on - strand, within Atu5478 at 470.792 kb on - strand, within Atu5478 at 470.796 kb on + strand, within Atu5478 at 470.804 kb on - strand, within Atu5478 at 470.804 kb on - strand, within Atu5478 at 470.837 kb on + strand, within Atu5478 at 470.893 kb on - strand, within Atu5478 at 470.894 kb on - strand, within Atu5478 at 470.932 kb on - strand, within Atu5478 at 470.954 kb on + strand, within Atu5478 at 470.954 kb on + strand, within Atu5478 at 470.961 kb on + strand, within Atu5478 at 470.961 kb on + strand, within Atu5478 at 470.962 kb on - strand, within Atu5478 at 470.962 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.975 kb on - strand, within Atu5478 at 471.030 kb on + strand, within Atu5478 at 471.088 kb on - strand at 471.114 kb on + strand at 471.122 kb on - strand at 471.124 kb on + strand at 471.127 kb on - strand at 471.226 kb on + strand at 471.247 kb on - strand at 471.262 kb on + strand, within Atu5479 at 471.267 kb on + strand, within Atu5479 at 471.337 kb on + strand, within Atu5479 at 471.350 kb on + strand, within Atu5479 at 471.359 kb on + strand, within Atu5479 at 471.359 kb on + strand, within Atu5479 at 471.360 kb on - strand, within Atu5479 at 471.411 kb on + strand, within Atu5479 at 471.524 kb on + strand, within Atu5479 at 471.600 kb on + strand, within Atu5479 at 471.600 kb on + strand, within Atu5479 at 471.607 kb on - strand, within Atu5479 at 471.655 kb on - strand, within Atu5479 at 471.660 kb on + strand, within Atu5479 at 471.661 kb on + strand, within Atu5479 at 471.688 kb on + strand, within Atu5479 at 471.757 kb on + strand, within Atu5479 at 471.758 kb on - strand, within Atu5479 at 471.765 kb on - strand, within Atu5479 at 471.771 kb on + strand, within Atu5479 at 471.771 kb on + strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.806 kb on - strand, within Atu5479 at 471.826 kb on - strand, within Atu5479 at 471.878 kb on + strand, within Atu5479 at 471.905 kb on - strand, within Atu5479 at 471.907 kb on + strand, within Atu5479 at 471.912 kb on + strand, within Atu5479 at 471.949 kb on + strand, within Atu5479 at 471.949 kb on + strand, within Atu5479 at 472.025 kb on + strand, within Atu5479 at 472.042 kb on + strand, within Atu5479 at 472.163 kb on + strand, within Atu5479 at 472.318 kb on + strand at 472.498 kb on - strand, within Atu5480 at 472.518 kb on - strand, within Atu5480 at 472.518 kb on - strand, within Atu5480 at 472.537 kb on - strand, within Atu5480 at 472.542 kb on + strand, within Atu5480 at 472.557 kb on - strand, within Atu5480 at 472.564 kb on + strand, within Atu5480 at 472.727 kb on + strand, within Atu5480 at 472.762 kb on + strand, within Atu5480 at 472.896 kb on + strand, within Atu5480 at 472.904 kb on - strand, within Atu5480 at 472.913 kb on + strand, within Atu5480 at 472.946 kb on - strand, within Atu5480 at 472.979 kb on - strand, within Atu5480 at 472.979 kb on - strand, within Atu5480 at 473.121 kb on + strand at 473.178 kb on - strand, within Atu5481 at 473.243 kb on - strand, within Atu5481
Per-strain Table
Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C) remove 470,307 + Atu5478 0.24 +0.4 470,435 + Atu5478 0.36 +0.8 470,443 - Atu5478 0.36 -1.4 470,498 - Atu5478 0.41 +1.7 470,498 - Atu5478 0.41 +0.0 470,501 - Atu5478 0.42 +1.6 470,546 + Atu5478 0.46 -0.5 470,559 - Atu5478 0.47 -0.3 470,588 - Atu5478 0.50 +0.4 470,626 + Atu5478 0.53 +0.1 470,661 + Atu5478 0.56 +0.5 470,662 - Atu5478 0.56 +1.7 470,669 - Atu5478 0.57 +0.7 470,726 + Atu5478 0.62 +2.9 470,726 + Atu5478 0.62 -0.7 470,734 - Atu5478 0.63 -1.5 470,792 - Atu5478 0.68 -0.5 470,796 + Atu5478 0.68 +0.5 470,804 - Atu5478 0.69 +1.2 470,804 - Atu5478 0.69 +0.9 470,837 + Atu5478 0.72 +1.7 470,893 - Atu5478 0.77 +0.5 470,894 - Atu5478 0.77 +3.5 470,932 - Atu5478 0.81 +0.0 470,954 + Atu5478 0.83 -0.8 470,954 + Atu5478 0.83 +1.0 470,961 + Atu5478 0.84 +2.0 470,961 + Atu5478 0.84 -0.3 470,962 - Atu5478 0.84 -0.7 470,962 - Atu5478 0.84 -0.9 470,969 - Atu5478 0.84 +2.9 470,969 - Atu5478 0.84 -0.4 470,969 - Atu5478 0.84 -0.4 470,969 - Atu5478 0.84 +3.5 470,969 - Atu5478 0.84 +0.7 470,975 - Atu5478 0.85 +1.5 471,030 + Atu5478 0.90 -1.3 471,088 - +1.7 471,114 + +0.3 471,122 - -0.4 471,124 + +0.1 471,127 - -0.3 471,226 + +1.7 471,247 - +1.0 471,262 + Atu5479 0.11 +0.6 471,267 + Atu5479 0.11 +0.7 471,337 + Atu5479 0.17 +0.1 471,350 + Atu5479 0.18 -1.1 471,359 + Atu5479 0.19 +1.9 471,359 + Atu5479 0.19 +2.2 471,360 - Atu5479 0.19 +0.9 471,411 + Atu5479 0.23 -0.3 471,524 + Atu5479 0.33 +2.2 471,600 + Atu5479 0.40 -0.6 471,600 + Atu5479 0.40 +0.5 471,607 - Atu5479 0.40 -0.2 471,655 - Atu5479 0.44 -1.0 471,660 + Atu5479 0.45 -1.9 471,661 + Atu5479 0.45 -1.2 471,688 + Atu5479 0.47 +0.9 471,757 + Atu5479 0.53 -0.3 471,758 - Atu5479 0.53 +1.1 471,765 - Atu5479 0.54 -1.1 471,771 + Atu5479 0.54 -0.5 471,771 + Atu5479 0.54 +0.9 471,779 - Atu5479 0.55 -0.3 471,779 - Atu5479 0.55 +0.4 471,779 - Atu5479 0.55 +0.0 471,779 - Atu5479 0.55 +1.9 471,779 - Atu5479 0.55 +2.5 471,779 - Atu5479 0.55 +1.0 471,806 - Atu5479 0.57 +1.0 471,826 - Atu5479 0.59 +0.4 471,878 + Atu5479 0.64 +1.5 471,905 - Atu5479 0.66 -1.0 471,907 + Atu5479 0.66 +3.5 471,912 + Atu5479 0.66 +1.0 471,949 + Atu5479 0.70 -0.3 471,949 + Atu5479 0.70 +1.0 472,025 + Atu5479 0.76 +0.1 472,042 + Atu5479 0.78 +0.2 472,163 + Atu5479 0.88 -0.2 472,318 + +0.5 472,498 - Atu5480 0.24 -0.7 472,518 - Atu5480 0.27 -0.2 472,518 - Atu5480 0.27 +1.2 472,537 - Atu5480 0.29 +4.5 472,542 + Atu5480 0.30 +0.6 472,557 - Atu5480 0.32 -0.0 472,564 + Atu5480 0.33 +0.4 472,727 + Atu5480 0.54 -0.8 472,762 + Atu5480 0.58 +1.0 472,896 + Atu5480 0.76 +2.2 472,904 - Atu5480 0.77 +1.5 472,913 + Atu5480 0.78 +1.3 472,946 - Atu5480 0.82 -1.3 472,979 - Atu5480 0.87 -0.8 472,979 - Atu5480 0.87 +1.9 473,121 + -0.1 473,178 - Atu5481 0.14 -0.3 473,243 - Atu5481 0.23 +0.8
Or see this region's nucleotide sequence