Experiment: D-Saccharic potassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5474 and Atu5475 are separated by 31 nucleotides Atu5475 and Atu5476 are separated by 39 nucleotides Atu5476 and Atu5477 are separated by 26 nucleotides
Atu5474: Atu5474 - 2-hydroxyacid dehydrogenase, at 466,208 to 467,143
Atu5474
Atu5475: Atu5475 - hypothetical protein, at 467,175 to 467,588
Atu5475
Atu5476: Atu5476 - CTP synthase, at 467,628 to 468,851
Atu5476
Atu5477: Atu5477 - peptidase, at 468,878 to 470,047
Atu5477
Position (kb) 467
468
469 Strain fitness (log2 ratio) -1
0
1
2
3 at 466.690 kb on - strand, within Atu5474 at 466.707 kb on + strand, within Atu5474 at 466.719 kb on - strand, within Atu5474 at 466.752 kb on + strand, within Atu5474 at 466.807 kb on - strand, within Atu5474 at 466.832 kb on + strand, within Atu5474 at 466.835 kb on - strand, within Atu5474 at 466.853 kb on + strand, within Atu5474 at 466.909 kb on + strand, within Atu5474 at 466.922 kb on - strand, within Atu5474 at 466.987 kb on + strand, within Atu5474 at 467.094 kb on + strand at 467.173 kb on - strand at 467.202 kb on + strand at 467.301 kb on + strand, within Atu5475 at 467.386 kb on + strand, within Atu5475 at 467.501 kb on + strand, within Atu5475 at 467.519 kb on - strand, within Atu5475 at 467.547 kb on - strand at 467.593 kb on - strand at 467.629 kb on + strand at 467.635 kb on + strand at 467.643 kb on - strand at 467.779 kb on - strand, within Atu5476 at 467.786 kb on - strand, within Atu5476 at 467.801 kb on + strand, within Atu5476 at 467.809 kb on - strand, within Atu5476 at 467.829 kb on + strand, within Atu5476 at 467.832 kb on - strand, within Atu5476 at 467.870 kb on + strand, within Atu5476 at 467.885 kb on + strand, within Atu5476 at 467.885 kb on + strand, within Atu5476 at 467.885 kb on + strand, within Atu5476 at 467.890 kb on + strand, within Atu5476 at 467.893 kb on - strand, within Atu5476 at 467.893 kb on - strand, within Atu5476 at 467.893 kb on - strand, within Atu5476 at 467.916 kb on + strand, within Atu5476 at 467.943 kb on - strand, within Atu5476 at 468.137 kb on - strand, within Atu5476 at 468.231 kb on - strand, within Atu5476 at 468.248 kb on - strand, within Atu5476 at 468.306 kb on + strand, within Atu5476 at 468.371 kb on - strand, within Atu5476 at 468.404 kb on - strand, within Atu5476 at 468.429 kb on + strand, within Atu5476 at 468.437 kb on - strand, within Atu5476 at 468.462 kb on + strand, within Atu5476 at 468.476 kb on + strand, within Atu5476 at 468.553 kb on + strand, within Atu5476 at 468.570 kb on + strand, within Atu5476 at 468.570 kb on + strand, within Atu5476 at 468.586 kb on - strand, within Atu5476 at 468.609 kb on - strand, within Atu5476 at 468.621 kb on - strand, within Atu5476 at 468.623 kb on + strand, within Atu5476 at 468.700 kb on + strand, within Atu5476 at 468.718 kb on - strand, within Atu5476 at 468.741 kb on - strand at 468.823 kb on + strand at 468.831 kb on - strand at 468.927 kb on + strand at 468.935 kb on - strand at 468.955 kb on + strand at 468.997 kb on + strand, within Atu5477 at 469.005 kb on - strand, within Atu5477 at 469.120 kb on + strand, within Atu5477 at 469.147 kb on + strand, within Atu5477 at 469.171 kb on - strand, within Atu5477 at 469.171 kb on - strand, within Atu5477 at 469.219 kb on + strand, within Atu5477 at 469.230 kb on - strand, within Atu5477 at 469.251 kb on + strand, within Atu5477 at 469.268 kb on + strand, within Atu5477 at 469.268 kb on + strand, within Atu5477 at 469.276 kb on - strand, within Atu5477 at 469.291 kb on - strand, within Atu5477 at 469.335 kb on + strand, within Atu5477 at 469.359 kb on - strand, within Atu5477 at 469.388 kb on - strand, within Atu5477 at 469.419 kb on - strand, within Atu5477 at 469.421 kb on + strand, within Atu5477 at 469.426 kb on + strand, within Atu5477 at 469.451 kb on + strand, within Atu5477 at 469.451 kb on + strand, within Atu5477 at 469.521 kb on + strand, within Atu5477 at 469.531 kb on - strand, within Atu5477 at 469.581 kb on + strand, within Atu5477 at 469.581 kb on + strand, within Atu5477 at 469.631 kb on + strand, within Atu5477 at 469.631 kb on + strand, within Atu5477 at 469.639 kb on + strand, within Atu5477 at 469.639 kb on - strand, within Atu5477 at 469.639 kb on - strand, within Atu5477 at 469.676 kb on - strand, within Atu5477 at 469.687 kb on - strand, within Atu5477 at 469.748 kb on - strand, within Atu5477 at 469.752 kb on - strand, within Atu5477
Per-strain Table
Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C) remove 466,690 - Atu5474 0.51 -0.9 466,707 + Atu5474 0.53 +0.7 466,719 - Atu5474 0.55 +0.6 466,752 + Atu5474 0.58 +0.8 466,807 - Atu5474 0.64 +0.1 466,832 + Atu5474 0.67 +1.3 466,835 - Atu5474 0.67 -1.5 466,853 + Atu5474 0.69 -0.3 466,909 + Atu5474 0.75 +1.2 466,922 - Atu5474 0.76 +1.7 466,987 + Atu5474 0.83 -0.2 467,094 + +3.0 467,173 - +0.7 467,202 + -0.1 467,301 + Atu5475 0.30 +1.4 467,386 + Atu5475 0.51 +0.9 467,501 + Atu5475 0.79 +0.8 467,519 - Atu5475 0.83 +0.7 467,547 - +1.0 467,593 - -0.3 467,629 + +0.0 467,635 + -0.3 467,643 - +1.2 467,779 - Atu5476 0.12 +1.5 467,786 - Atu5476 0.13 -0.3 467,801 + Atu5476 0.14 +1.9 467,809 - Atu5476 0.15 -1.0 467,829 + Atu5476 0.16 +0.6 467,832 - Atu5476 0.17 -0.7 467,870 + Atu5476 0.20 -0.5 467,885 + Atu5476 0.21 -0.1 467,885 + Atu5476 0.21 +1.2 467,885 + Atu5476 0.21 +2.9 467,890 + Atu5476 0.21 -0.1 467,893 - Atu5476 0.22 +0.2 467,893 - Atu5476 0.22 +1.3 467,893 - Atu5476 0.22 -0.9 467,916 + Atu5476 0.24 +0.8 467,943 - Atu5476 0.26 +2.5 468,137 - Atu5476 0.42 +0.8 468,231 - Atu5476 0.49 +0.3 468,248 - Atu5476 0.51 +0.0 468,306 + Atu5476 0.55 +1.7 468,371 - Atu5476 0.61 +3.7 468,404 - Atu5476 0.63 -1.2 468,429 + Atu5476 0.65 +0.3 468,437 - Atu5476 0.66 -0.7 468,462 + Atu5476 0.68 -0.4 468,476 + Atu5476 0.69 -0.2 468,553 + Atu5476 0.76 +0.4 468,570 + Atu5476 0.77 -0.4 468,570 + Atu5476 0.77 +0.3 468,586 - Atu5476 0.78 +0.5 468,609 - Atu5476 0.80 +0.9 468,621 - Atu5476 0.81 -0.8 468,623 + Atu5476 0.81 -0.3 468,700 + Atu5476 0.88 +0.8 468,718 - Atu5476 0.89 +2.9 468,741 - +1.0 468,823 + +0.7 468,831 - +1.7 468,927 + +1.5 468,935 - -0.5 468,955 + -0.2 468,997 + Atu5477 0.10 +0.9 469,005 - Atu5477 0.11 +2.5 469,120 + Atu5477 0.21 -1.3 469,147 + Atu5477 0.23 +0.2 469,171 - Atu5477 0.25 +1.5 469,171 - Atu5477 0.25 -0.5 469,219 + Atu5477 0.29 +0.9 469,230 - Atu5477 0.30 -0.6 469,251 + Atu5477 0.32 -0.2 469,268 + Atu5477 0.33 -0.5 469,268 + Atu5477 0.33 +2.6 469,276 - Atu5477 0.34 -0.9 469,291 - Atu5477 0.35 -0.8 469,335 + Atu5477 0.39 -0.6 469,359 - Atu5477 0.41 +0.9 469,388 - Atu5477 0.44 -0.2 469,419 - Atu5477 0.46 +1.2 469,421 + Atu5477 0.46 +0.2 469,426 + Atu5477 0.47 -0.3 469,451 + Atu5477 0.49 +0.6 469,451 + Atu5477 0.49 +2.9 469,521 + Atu5477 0.55 -0.2 469,531 - Atu5477 0.56 -1.0 469,581 + Atu5477 0.60 +0.6 469,581 + Atu5477 0.60 +0.4 469,631 + Atu5477 0.64 +0.1 469,631 + Atu5477 0.64 +0.2 469,639 + Atu5477 0.65 +1.3 469,639 - Atu5477 0.65 +1.0 469,639 - Atu5477 0.65 -0.3 469,676 - Atu5477 0.68 +0.5 469,687 - Atu5477 0.69 +1.3 469,748 - Atu5477 0.74 +1.9 469,752 - Atu5477 0.75 -0.5
Or see this region's nucleotide sequence