Experiment: D-Saccharic potassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5418 and Atu5419 are separated by 386 nucleotides Atu5419 and Atu5420 are separated by 54 nucleotides
Atu5418: Atu5418 - opine/octopine dehydrogenase, at 412,276 to 413,358
Atu5418
Atu5419: Atu5419 - LysR family transcriptional regulator, at 413,745 to 414,725
Atu5419
Atu5420: Atu5420 - ABC transporter substrate binding protein (putrescine), at 414,780 to 415,880
Atu5420
Position (kb) 413
414
415 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 412.850 kb on - strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.854 kb on + strand, within Atu5418 at 412.855 kb on + strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.862 kb on - strand, within Atu5418 at 412.863 kb on - strand, within Atu5418 at 412.863 kb on - strand, within Atu5418 at 412.864 kb on + strand, within Atu5418 at 412.872 kb on - strand, within Atu5418 at 412.931 kb on - strand, within Atu5418 at 413.034 kb on + strand, within Atu5418 at 413.065 kb on + strand, within Atu5418 at 413.140 kb on - strand, within Atu5418 at 413.166 kb on + strand, within Atu5418 at 413.166 kb on + strand, within Atu5418 at 413.290 kb on - strand at 413.395 kb on - strand at 413.404 kb on + strand at 413.412 kb on - strand at 413.495 kb on - strand at 413.502 kb on + strand at 413.537 kb on + strand at 413.537 kb on + strand at 413.537 kb on + strand at 413.540 kb on - strand at 413.543 kb on + strand at 413.545 kb on - strand at 413.553 kb on + strand at 413.617 kb on - strand at 413.767 kb on + strand at 413.807 kb on + strand at 413.832 kb on - strand at 413.918 kb on + strand, within Atu5419 at 413.992 kb on + strand, within Atu5419 at 413.993 kb on - strand, within Atu5419 at 414.010 kb on + strand, within Atu5419 at 414.010 kb on + strand, within Atu5419 at 414.014 kb on + strand, within Atu5419 at 414.072 kb on - strand, within Atu5419 at 414.087 kb on - strand, within Atu5419 at 414.093 kb on + strand, within Atu5419 at 414.149 kb on + strand, within Atu5419 at 414.159 kb on + strand, within Atu5419 at 414.172 kb on + strand, within Atu5419 at 414.180 kb on - strand, within Atu5419 at 414.230 kb on - strand, within Atu5419 at 414.252 kb on + strand, within Atu5419 at 414.390 kb on - strand, within Atu5419 at 414.399 kb on + strand, within Atu5419 at 414.430 kb on + strand, within Atu5419 at 414.435 kb on + strand, within Atu5419 at 414.524 kb on + strand, within Atu5419 at 414.597 kb on - strand, within Atu5419 at 414.667 kb on + strand at 414.705 kb on + strand at 414.770 kb on + strand at 414.796 kb on - strand at 414.811 kb on + strand at 414.811 kb on + strand at 414.811 kb on + strand at 414.811 kb on + strand at 414.811 kb on + strand at 414.819 kb on - strand at 414.819 kb on - strand at 414.819 kb on - strand at 414.819 kb on - strand at 414.819 kb on - strand at 414.819 kb on - strand at 414.881 kb on + strand at 414.889 kb on - strand at 414.896 kb on + strand, within Atu5420 at 414.934 kb on - strand, within Atu5420 at 414.934 kb on - strand, within Atu5420 at 415.084 kb on + strand, within Atu5420 at 415.101 kb on - strand, within Atu5420 at 415.111 kb on - strand, within Atu5420 at 415.154 kb on - strand, within Atu5420 at 415.156 kb on - strand, within Atu5420 at 415.192 kb on - strand, within Atu5420 at 415.233 kb on + strand, within Atu5420 at 415.248 kb on - strand, within Atu5420 at 415.289 kb on - strand, within Atu5420 at 415.290 kb on + strand, within Atu5420 at 415.291 kb on - strand, within Atu5420 at 415.307 kb on - strand, within Atu5420 at 415.328 kb on + strand, within Atu5420 at 415.336 kb on - strand, within Atu5420 at 415.363 kb on - strand, within Atu5420 at 415.392 kb on - strand, within Atu5420 at 415.459 kb on - strand, within Atu5420 at 415.465 kb on + strand, within Atu5420 at 415.514 kb on + strand, within Atu5420 at 415.514 kb on + strand, within Atu5420 at 415.514 kb on + strand, within Atu5420 at 415.514 kb on + strand, within Atu5420 at 415.522 kb on - strand, within Atu5420 at 415.558 kb on - strand, within Atu5420 at 415.606 kb on + strand, within Atu5420 at 415.617 kb on + strand, within Atu5420 at 415.644 kb on + strand, within Atu5420 at 415.652 kb on - strand, within Atu5420 at 415.652 kb on - strand, within Atu5420 at 415.652 kb on - strand, within Atu5420 at 415.655 kb on + strand, within Atu5420 at 415.655 kb on + strand, within Atu5420 at 415.665 kb on + strand, within Atu5420 at 415.673 kb on - strand, within Atu5420 at 415.673 kb on - strand, within Atu5420 at 415.673 kb on - strand, within Atu5420 at 415.673 kb on - strand, within Atu5420 at 415.673 kb on - strand, within Atu5420 at 415.698 kb on + strand, within Atu5420 at 415.722 kb on + strand, within Atu5420
Per-strain Table
Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C) remove 412,850 - Atu5418 0.53 +0.0 412,854 + Atu5418 0.53 -0.7 412,854 + Atu5418 0.53 -1.0 412,854 + Atu5418 0.53 -0.5 412,854 + Atu5418 0.53 +0.4 412,854 + Atu5418 0.53 -1.3 412,854 + Atu5418 0.53 -0.3 412,854 + Atu5418 0.53 +1.5 412,854 + Atu5418 0.53 -0.3 412,854 + Atu5418 0.53 +0.1 412,854 + Atu5418 0.53 -0.8 412,854 + Atu5418 0.53 +0.3 412,854 + Atu5418 0.53 -0.9 412,854 + Atu5418 0.53 +0.4 412,854 + Atu5418 0.53 +0.2 412,854 + Atu5418 0.53 -0.8 412,854 + Atu5418 0.53 +1.3 412,855 + Atu5418 0.53 +2.5 412,862 - Atu5418 0.54 -0.5 412,862 - Atu5418 0.54 +0.1 412,862 - Atu5418 0.54 +0.2 412,862 - Atu5418 0.54 -0.2 412,862 - Atu5418 0.54 -1.0 412,862 - Atu5418 0.54 -0.7 412,862 - Atu5418 0.54 +0.3 412,862 - Atu5418 0.54 -0.3 412,863 - Atu5418 0.54 +5.5 412,863 - Atu5418 0.54 -1.2 412,864 + Atu5418 0.54 +0.5 412,872 - Atu5418 0.55 +1.3 412,931 - Atu5418 0.60 +0.6 413,034 + Atu5418 0.70 +1.4 413,065 + Atu5418 0.73 +1.7 413,140 - Atu5418 0.80 +2.9 413,166 + Atu5418 0.82 -2.3 413,166 + Atu5418 0.82 +0.2 413,290 - -0.3 413,395 - -0.7 413,404 + +0.1 413,412 - -0.2 413,495 - -0.4 413,502 + +2.5 413,537 + +1.8 413,537 + +1.5 413,537 + -1.1 413,540 - +0.5 413,543 + +1.3 413,545 - +0.2 413,553 + +1.5 413,617 - -1.2 413,767 + -0.4 413,807 + +1.5 413,832 - +1.7 413,918 + Atu5419 0.18 +0.7 413,992 + Atu5419 0.25 +0.9 413,993 - Atu5419 0.25 +0.4 414,010 + Atu5419 0.27 +2.9 414,010 + Atu5419 0.27 +3.5 414,014 + Atu5419 0.27 +0.2 414,072 - Atu5419 0.33 +0.6 414,087 - Atu5419 0.35 +1.2 414,093 + Atu5419 0.35 +0.0 414,149 + Atu5419 0.41 -0.0 414,159 + Atu5419 0.42 +0.8 414,172 + Atu5419 0.44 +1.3 414,180 - Atu5419 0.44 +1.9 414,230 - Atu5419 0.49 -0.0 414,252 + Atu5419 0.52 +0.1 414,390 - Atu5419 0.66 +0.1 414,399 + Atu5419 0.67 -0.0 414,430 + Atu5419 0.70 +2.5 414,435 + Atu5419 0.70 -0.6 414,524 + Atu5419 0.79 +1.2 414,597 - Atu5419 0.87 +0.4 414,667 + +1.2 414,705 + +1.9 414,770 + -0.3 414,796 - +0.6 414,811 + +0.4 414,811 + +1.2 414,811 + +0.3 414,811 + -1.5 414,811 + +0.9 414,819 - -0.1 414,819 - +1.8 414,819 - -0.1 414,819 - +0.3 414,819 - +0.4 414,819 - +1.5 414,881 + +1.8 414,889 - +2.7 414,896 + Atu5420 0.11 -1.2 414,934 - Atu5420 0.14 +0.5 414,934 - Atu5420 0.14 +1.9 415,084 + Atu5420 0.28 +0.7 415,101 - Atu5420 0.29 -0.8 415,111 - Atu5420 0.30 +0.2 415,154 - Atu5420 0.34 +0.1 415,156 - Atu5420 0.34 +0.3 415,192 - Atu5420 0.37 +1.6 415,233 + Atu5420 0.41 -0.0 415,248 - Atu5420 0.43 +0.9 415,289 - Atu5420 0.46 -2.3 415,290 + Atu5420 0.46 +0.6 415,291 - Atu5420 0.46 +2.9 415,307 - Atu5420 0.48 -1.1 415,328 + Atu5420 0.50 -0.4 415,336 - Atu5420 0.50 -1.4 415,363 - Atu5420 0.53 +0.2 415,392 - Atu5420 0.56 +1.0 415,459 - Atu5420 0.62 +0.4 415,465 + Atu5420 0.62 +0.9 415,514 + Atu5420 0.67 -0.0 415,514 + Atu5420 0.67 +3.5 415,514 + Atu5420 0.67 +1.0 415,514 + Atu5420 0.67 +1.5 415,522 - Atu5420 0.67 -0.5 415,558 - Atu5420 0.71 +0.7 415,606 + Atu5420 0.75 -0.0 415,617 + Atu5420 0.76 +0.7 415,644 + Atu5420 0.78 +0.1 415,652 - Atu5420 0.79 +2.2 415,652 - Atu5420 0.79 +1.2 415,652 - Atu5420 0.79 -0.3 415,655 + Atu5420 0.79 +0.3 415,655 + Atu5420 0.79 +1.4 415,665 + Atu5420 0.80 -0.7 415,673 - Atu5420 0.81 -0.2 415,673 - Atu5420 0.81 -0.7 415,673 - Atu5420 0.81 -1.3 415,673 - Atu5420 0.81 -0.2 415,673 - Atu5420 0.81 +0.4 415,698 + Atu5420 0.83 +0.1 415,722 + Atu5420 0.86 +1.5
Or see this region's nucleotide sequence