Strain Fitness in Agrobacterium fabrum C58 around Atu5067

Experiment: D-Saccharic potassium salt (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5066 and Atu5067 are separated by 298 nucleotidesAtu5067 and Atu5068 are separated by 22 nucleotides Atu5066: Atu5066 - hypothetical protein, at 64,366 to 65,133 Atu5066 Atu5067: Atu5067 - dihydrodipicolinate synthase, at 65,432 to 66,325 Atu5067 Atu5068: Atu5068 - ABC transporter nucleotide binding/ATPase (oligopeptide), at 66,348 to 67,967 Atu5068 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 64.465 kb on + strand, within Atu5066at 64.473 kb on - strand, within Atu5066at 64.473 kb on - strand, within Atu5066at 64.478 kb on + strand, within Atu5066at 64.478 kb on + strand, within Atu5066at 64.491 kb on - strand, within Atu5066at 64.493 kb on + strand, within Atu5066at 64.501 kb on - strand, within Atu5066at 64.507 kb on + strand, within Atu5066at 64.507 kb on + strand, within Atu5066at 64.515 kb on - strand, within Atu5066at 64.515 kb on - strand, within Atu5066at 64.547 kb on - strand, within Atu5066at 64.547 kb on - strand, within Atu5066at 64.677 kb on + strand, within Atu5066at 64.721 kb on - strand, within Atu5066at 64.738 kb on - strand, within Atu5066at 64.811 kb on - strand, within Atu5066at 64.813 kb on - strand, within Atu5066at 64.815 kb on + strand, within Atu5066at 64.869 kb on + strand, within Atu5066at 64.902 kb on + strand, within Atu5066at 64.902 kb on + strand, within Atu5066at 64.902 kb on + strand, within Atu5066at 64.902 kb on + strand, within Atu5066at 64.902 kb on + strand, within Atu5066at 64.910 kb on - strand, within Atu5066at 64.922 kb on - strand, within Atu5066at 64.962 kb on + strand, within Atu5066at 65.144 kb on + strandat 65.180 kb on - strandat 65.209 kb on + strandat 65.216 kb on - strandat 65.217 kb on - strandat 65.308 kb on - strandat 65.389 kb on + strandat 65.427 kb on - strandat 65.512 kb on - strandat 65.567 kb on - strand, within Atu5067at 65.570 kb on + strand, within Atu5067at 65.582 kb on + strand, within Atu5067at 65.611 kb on - strand, within Atu5067at 65.624 kb on + strand, within Atu5067at 65.656 kb on + strand, within Atu5067at 65.658 kb on - strand, within Atu5067at 65.697 kb on + strand, within Atu5067at 65.740 kb on - strand, within Atu5067at 65.769 kb on + strand, within Atu5067at 65.772 kb on - strand, within Atu5067at 65.825 kb on + strand, within Atu5067at 65.870 kb on + strand, within Atu5067at 65.905 kb on + strand, within Atu5067at 65.928 kb on - strand, within Atu5067at 65.942 kb on - strand, within Atu5067at 65.954 kb on - strand, within Atu5067at 65.965 kb on + strand, within Atu5067at 65.973 kb on - strand, within Atu5067at 66.035 kb on - strand, within Atu5067at 66.050 kb on + strand, within Atu5067at 66.076 kb on + strand, within Atu5067at 66.092 kb on - strand, within Atu5067at 66.176 kb on - strand, within Atu5067at 66.226 kb on - strand, within Atu5067at 66.283 kb on + strandat 66.293 kb on + strandat 66.293 kb on + strandat 66.326 kb on + strandat 66.328 kb on + strandat 66.328 kb on + strandat 66.371 kb on + strandat 66.401 kb on - strandat 66.403 kb on + strandat 66.412 kb on - strandat 66.420 kb on + strandat 66.428 kb on - strandat 66.441 kb on - strandat 66.449 kb on - strandat 66.451 kb on - strandat 66.453 kb on + strandat 66.505 kb on + strandat 66.542 kb on + strand, within Atu5068at 66.542 kb on + strand, within Atu5068at 66.542 kb on + strand, within Atu5068at 66.550 kb on - strand, within Atu5068at 66.550 kb on - strand, within Atu5068at 66.550 kb on - strand, within Atu5068at 66.589 kb on + strand, within Atu5068at 66.620 kb on - strand, within Atu5068at 66.655 kb on - strand, within Atu5068at 66.676 kb on - strand, within Atu5068at 66.694 kb on + strand, within Atu5068at 66.694 kb on + strand, within Atu5068at 66.710 kb on + strand, within Atu5068at 66.757 kb on + strand, within Atu5068at 66.856 kb on + strand, within Atu5068at 66.953 kb on + strand, within Atu5068at 66.954 kb on + strand, within Atu5068at 66.962 kb on - strand, within Atu5068at 67.128 kb on + strand, within Atu5068at 67.158 kb on + strand, within Atu5068at 67.165 kb on + strand, within Atu5068at 67.167 kb on - strand, within Atu5068at 67.167 kb on - strand, within Atu5068at 67.173 kb on + strand, within Atu5068at 67.221 kb on - strand, within Atu5068

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C)
remove
64,465 + Atu5066 0.13 +0.0
64,473 - Atu5066 0.14 +1.0
64,473 - Atu5066 0.14 -0.5
64,478 + Atu5066 0.15 +0.4
64,478 + Atu5066 0.15 +1.3
64,491 - Atu5066 0.16 +2.2
64,493 + Atu5066 0.17 +0.4
64,501 - Atu5066 0.18 +0.1
64,507 + Atu5066 0.18 +1.3
64,507 + Atu5066 0.18 +0.1
64,515 - Atu5066 0.19 +2.3
64,515 - Atu5066 0.19 +0.9
64,547 - Atu5066 0.24 -0.7
64,547 - Atu5066 0.24 +0.1
64,677 + Atu5066 0.40 +1.9
64,721 - Atu5066 0.46 +0.6
64,738 - Atu5066 0.48 -0.7
64,811 - Atu5066 0.58 +0.8
64,813 - Atu5066 0.58 -0.9
64,815 + Atu5066 0.58 -0.2
64,869 + Atu5066 0.65 -0.3
64,902 + Atu5066 0.70 -0.6
64,902 + Atu5066 0.70 -0.7
64,902 + Atu5066 0.70 -0.8
64,902 + Atu5066 0.70 +1.3
64,902 + Atu5066 0.70 -0.5
64,910 - Atu5066 0.71 -1.7
64,922 - Atu5066 0.72 -1.7
64,962 + Atu5066 0.78 +1.6
65,144 + -1.2
65,180 - +2.3
65,209 + +1.5
65,216 - +4.5
65,217 - -0.3
65,308 - -0.6
65,389 + +1.6
65,427 - -1.5
65,512 - +0.5
65,567 - Atu5067 0.15 -0.2
65,570 + Atu5067 0.15 +0.8
65,582 + Atu5067 0.17 -0.3
65,611 - Atu5067 0.20 -0.5
65,624 + Atu5067 0.21 +2.5
65,656 + Atu5067 0.25 +1.3
65,658 - Atu5067 0.25 +0.4
65,697 + Atu5067 0.30 +2.2
65,740 - Atu5067 0.34 -0.2
65,769 + Atu5067 0.38 +0.9
65,772 - Atu5067 0.38 +0.6
65,825 + Atu5067 0.44 +0.8
65,870 + Atu5067 0.49 +0.1
65,905 + Atu5067 0.53 +1.9
65,928 - Atu5067 0.55 -1.5
65,942 - Atu5067 0.57 -0.4
65,954 - Atu5067 0.58 +0.7
65,965 + Atu5067 0.60 +1.4
65,973 - Atu5067 0.61 +0.6
66,035 - Atu5067 0.67 +0.7
66,050 + Atu5067 0.69 +1.0
66,076 + Atu5067 0.72 -0.3
66,092 - Atu5067 0.74 -0.2
66,176 - Atu5067 0.83 -1.6
66,226 - Atu5067 0.89 -0.5
66,283 + +0.9
66,293 + +0.7
66,293 + -2.4
66,326 + +0.7
66,328 + -0.1
66,328 + -0.5
66,371 + +0.1
66,401 - +0.9
66,403 + +0.6
66,412 - -0.7
66,420 + +0.3
66,428 - -0.8
66,441 - +0.9
66,449 - -0.1
66,451 - +0.9
66,453 + +0.8
66,505 + +0.2
66,542 + Atu5068 0.12 +0.3
66,542 + Atu5068 0.12 +2.9
66,542 + Atu5068 0.12 +0.0
66,550 - Atu5068 0.12 +1.3
66,550 - Atu5068 0.12 +2.2
66,550 - Atu5068 0.12 +1.7
66,589 + Atu5068 0.15 +0.5
66,620 - Atu5068 0.17 -0.4
66,655 - Atu5068 0.19 +1.1
66,676 - Atu5068 0.20 +0.4
66,694 + Atu5068 0.21 +2.2
66,694 + Atu5068 0.21 +2.0
66,710 + Atu5068 0.22 +2.2
66,757 + Atu5068 0.25 +3.3
66,856 + Atu5068 0.31 +0.5
66,953 + Atu5068 0.37 +0.7
66,954 + Atu5068 0.37 -0.3
66,962 - Atu5068 0.38 +0.2
67,128 + Atu5068 0.48 -0.7
67,158 + Atu5068 0.50 +4.5
67,165 + Atu5068 0.50 +1.7
67,167 - Atu5068 0.51 +0.8
67,167 - Atu5068 0.51 +0.7
67,173 + Atu5068 0.51 +1.2
67,221 - Atu5068 0.54 -0.2

Or see this region's nucleotide sequence