Experiment: D-Saccharic potassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3658 and Atu3661 are separated by 508 nucleotides Atu3661 and Atu3662 are separated by 614 nucleotides
Atu3658: Atu3658 - MerR family transcriptional regulator, at 707,492 to 708,577
Atu3658
Atu3661: Atu3661 - hypothetical protein, at 709,086 to 709,745
Atu3661
Atu3662: Atu3662 - hypothetical protein, at 710,360 to 711,970
Atu3662
Position (kb) 709
710 Strain fitness (log2 ratio) -2
-1
0
1
2 at 708.127 kb on + strand, within Atu3658 at 708.136 kb on + strand, within Atu3658 at 708.180 kb on + strand, within Atu3658 at 708.188 kb on - strand, within Atu3658 at 708.201 kb on + strand, within Atu3658 at 708.216 kb on + strand, within Atu3658 at 708.234 kb on + strand, within Atu3658 at 708.298 kb on + strand, within Atu3658 at 708.300 kb on - strand, within Atu3658 at 708.305 kb on - strand, within Atu3658 at 708.353 kb on - strand, within Atu3658 at 708.407 kb on + strand, within Atu3658 at 708.421 kb on + strand, within Atu3658 at 708.434 kb on - strand, within Atu3658 at 708.535 kb on - strand at 708.538 kb on + strand at 708.541 kb on - strand at 708.680 kb on - strand at 708.695 kb on - strand at 708.845 kb on - strand at 708.880 kb on + strand at 708.888 kb on - strand at 709.107 kb on - strand at 709.165 kb on + strand, within Atu3661 at 709.197 kb on + strand, within Atu3661 at 709.205 kb on - strand, within Atu3661 at 709.207 kb on + strand, within Atu3661 at 709.215 kb on - strand, within Atu3661 at 709.299 kb on - strand, within Atu3661 at 709.342 kb on + strand, within Atu3661 at 709.350 kb on - strand, within Atu3661 at 709.369 kb on + strand, within Atu3661 at 709.369 kb on + strand, within Atu3661 at 709.369 kb on + strand, within Atu3661 at 709.369 kb on - strand, within Atu3661 at 709.376 kb on + strand, within Atu3661 at 709.423 kb on - strand, within Atu3661 at 709.438 kb on - strand, within Atu3661 at 709.539 kb on + strand, within Atu3661 at 709.539 kb on + strand, within Atu3661 at 709.547 kb on - strand, within Atu3661 at 709.547 kb on - strand, within Atu3661 at 709.547 kb on - strand, within Atu3661 at 709.558 kb on + strand, within Atu3661 at 709.601 kb on - strand, within Atu3661 at 709.616 kb on + strand, within Atu3661 at 709.622 kb on - strand, within Atu3661 at 709.627 kb on - strand, within Atu3661 at 709.702 kb on + strand at 709.710 kb on - strand at 709.718 kb on + strand at 709.723 kb on + strand at 709.728 kb on + strand at 709.874 kb on + strand at 709.881 kb on + strand at 709.891 kb on - strand at 709.949 kb on + strand at 710.050 kb on + strand at 710.077 kb on + strand at 710.091 kb on - strand at 710.138 kb on + strand at 710.147 kb on - strand at 710.204 kb on + strand at 710.232 kb on + strand at 710.232 kb on + strand at 710.277 kb on + strand at 710.285 kb on - strand at 710.306 kb on + strand at 710.324 kb on - strand at 710.357 kb on + strand at 710.357 kb on + strand at 710.372 kb on - strand at 710.384 kb on - strand at 710.402 kb on - strand at 710.413 kb on - strand at 710.452 kb on + strand at 710.605 kb on - strand, within Atu3662 at 710.689 kb on + strand, within Atu3662 at 710.689 kb on + strand, within Atu3662 at 710.689 kb on + strand, within Atu3662 at 710.689 kb on + strand, within Atu3662 at 710.697 kb on - strand, within Atu3662
Per-strain Table
Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C) remove 708,127 + Atu3658 0.58 +1.7 708,136 + Atu3658 0.59 +2.0 708,180 + Atu3658 0.63 -1.2 708,188 - Atu3658 0.64 +0.5 708,201 + Atu3658 0.65 +1.6 708,216 + Atu3658 0.67 -0.0 708,234 + Atu3658 0.68 +0.4 708,298 + Atu3658 0.74 +1.1 708,300 - Atu3658 0.74 -0.3 708,305 - Atu3658 0.75 -0.8 708,353 - Atu3658 0.79 -0.2 708,407 + Atu3658 0.84 +0.5 708,421 + Atu3658 0.86 -0.5 708,434 - Atu3658 0.87 +0.0 708,535 - -0.6 708,538 + +1.4 708,541 - -0.4 708,680 - -0.5 708,695 - +0.6 708,845 - -1.0 708,880 + -1.8 708,888 - +1.6 709,107 - -1.0 709,165 + Atu3661 0.12 +0.4 709,197 + Atu3661 0.17 -0.1 709,205 - Atu3661 0.18 -0.4 709,207 + Atu3661 0.18 -0.5 709,215 - Atu3661 0.20 -0.6 709,299 - Atu3661 0.32 +0.6 709,342 + Atu3661 0.39 +1.6 709,350 - Atu3661 0.40 +1.8 709,369 + Atu3661 0.43 +0.6 709,369 + Atu3661 0.43 -0.6 709,369 + Atu3661 0.43 +0.4 709,369 - Atu3661 0.43 +0.5 709,376 + Atu3661 0.44 +1.4 709,423 - Atu3661 0.51 +2.0 709,438 - Atu3661 0.53 -0.4 709,539 + Atu3661 0.69 -0.6 709,539 + Atu3661 0.69 +1.2 709,547 - Atu3661 0.70 -0.1 709,547 - Atu3661 0.70 +0.4 709,547 - Atu3661 0.70 +1.8 709,558 + Atu3661 0.72 +0.3 709,601 - Atu3661 0.78 +0.3 709,616 + Atu3661 0.80 -0.0 709,622 - Atu3661 0.81 +0.2 709,627 - Atu3661 0.82 +0.3 709,702 + -0.6 709,710 - -0.1 709,718 + +0.3 709,723 + +0.2 709,728 + -0.3 709,874 + -0.2 709,881 + +0.3 709,891 - +1.0 709,949 + +0.1 710,050 + +1.6 710,077 + +0.1 710,091 - +0.3 710,138 + -1.9 710,147 - +0.2 710,204 + +0.4 710,232 + -0.2 710,232 + +1.1 710,277 + +0.5 710,285 - +0.4 710,306 + -2.0 710,324 - -1.1 710,357 + -0.4 710,357 + -0.1 710,372 - +2.0 710,384 - -0.5 710,402 - +0.5 710,413 - -1.3 710,452 + -0.0 710,605 - Atu3662 0.15 -0.1 710,689 + Atu3662 0.20 +0.3 710,689 + Atu3662 0.20 -0.3 710,689 + Atu3662 0.20 +0.4 710,689 + Atu3662 0.20 +0.8 710,697 - Atu3662 0.21 -0.6
Or see this region's nucleotide sequence