Strain Fitness in Agrobacterium fabrum C58 around Atu2765

Experiment: D-Saccharic potassium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2763 and Atu2764 are separated by 276 nucleotidesAtu2764 and Atu2765 are separated by 72 nucleotidesAtu2765 and Atu2766 are separated by 541 nucleotides Atu2763: Atu2763 - two component response regulator, at 2,764,213 to 2,764,896 Atu2763 Atu2764: Atu2764 - hypothetical protein, at 2,765,173 to 2,765,583 Atu2764 Atu2765: Atu2765 - transcriptional regulator, CarD family, at 2,765,656 to 2,766,225 Atu2765 Atu2766: Atu2766 - NAD-glutamate dehydrogenase, at 2,766,767 to 2,771,524 Atu2766 Position (kb) 2765 2766 2767Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2765.100 kb on - strandat 2765.131 kb on + strandat 2765.183 kb on - strandat 2765.216 kb on + strand, within Atu2764at 2765.224 kb on - strand, within Atu2764at 2765.302 kb on - strand, within Atu2764at 2765.327 kb on - strand, within Atu2764at 2765.343 kb on + strand, within Atu2764at 2765.343 kb on + strand, within Atu2764at 2765.343 kb on + strand, within Atu2764at 2765.343 kb on + strand, within Atu2764at 2765.351 kb on - strand, within Atu2764at 2765.351 kb on - strand, within Atu2764at 2765.403 kb on + strand, within Atu2764at 2765.403 kb on + strand, within Atu2764at 2765.403 kb on + strand, within Atu2764at 2765.408 kb on + strand, within Atu2764at 2765.426 kb on - strand, within Atu2764at 2765.577 kb on + strandat 2766.319 kb on - strandat 2766.651 kb on - strandat 2766.910 kb on + strandat 2766.955 kb on - strandat 2767.090 kb on - strandat 2767.104 kb on + strandat 2767.153 kb on + strandat 2767.156 kb on - strandat 2767.156 kb on - strandat 2767.161 kb on - strandat 2767.200 kb on + strandat 2767.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C)
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2,765,100 - -0.2
2,765,131 + -0.5
2,765,183 - +0.4
2,765,216 + Atu2764 0.10 +2.3
2,765,224 - Atu2764 0.12 +0.3
2,765,302 - Atu2764 0.31 +0.2
2,765,327 - Atu2764 0.37 -0.7
2,765,343 + Atu2764 0.41 -0.7
2,765,343 + Atu2764 0.41 +1.0
2,765,343 + Atu2764 0.41 +1.7
2,765,343 + Atu2764 0.41 -1.7
2,765,351 - Atu2764 0.43 -0.6
2,765,351 - Atu2764 0.43 -0.3
2,765,403 + Atu2764 0.56 -0.8
2,765,403 + Atu2764 0.56 +1.0
2,765,403 + Atu2764 0.56 -0.8
2,765,408 + Atu2764 0.57 +0.3
2,765,426 - Atu2764 0.62 -0.1
2,765,577 + +0.0
2,766,319 - +5.1
2,766,651 - -0.2
2,766,910 + +1.2
2,766,955 - -0.6
2,767,090 - +0.5
2,767,104 + -0.2
2,767,153 + +0.4
2,767,156 - -0.2
2,767,156 - +1.2
2,767,161 - -0.8
2,767,200 + -0.8
2,767,221 - +0.4

Or see this region's nucleotide sequence