Strain Fitness in Agrobacterium fabrum C58 around Atu1269

Experiment: D-Saccharic potassium salt (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu1266 and Atu1267 are separated by 41 nucleotidesAtu1267 and Atu1268 are separated by 435 nucleotidesAtu1268 and Atu1269 overlap by 31 nucleotidesAtu1269 and Atu1270 are separated by 21 nucleotidesAtu1270 and Atu1271 overlap by 4 nucleotides Atu1266: Atu1266 - tRNA-Asp, at 1,255,590 to 1,255,666 Atu1266 Atu1267: Atu1267 - tRNA-Asp, at 1,255,708 to 1,255,784 Atu1267 Atu1268: Atu1268 - NADH ubiquinone oxidoreductase chain A, at 1,256,220 to 1,256,585 Atu1268 Atu1269: Atu1269 - NADH ubiqionone oxidoreductase chain B, at 1,256,555 to 1,257,160 Atu1269 Atu1270: Atu1270 - NADH ubiquinone oxidoreductase chain C, at 1,257,182 to 1,257,784 Atu1270 Atu1271: Atu1271 - hypothetical protein, at 1,257,781 to 1,258,209 Atu1271 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -1 0 1 2at 1255.696 kb on + strandat 1255.941 kb on - strandat 1256.091 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C)
remove
1,255,696 + +2.3
1,255,941 - -0.0
1,256,091 - +1.1

Or see this region's nucleotide sequence