Experiment: D-Saccharic potassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0897 and Atu0898 are separated by 222 nucleotides Atu0898 and Atu0899 are separated by 104 nucleotides Atu0899 and Atu0900 are separated by 41 nucleotides Atu0900 and Atu0901 are separated by 149 nucleotides
Atu0897: Atu0897 - protease II, at 887,372 to 889,471
Atu0897
Atu0898: Atu0898 - hypothetical protein, at 889,694 to 890,095
Atu0898
Atu0899: Atu0899 - dihydrodipicolinate synthase, at 890,200 to 891,108
Atu0899
Atu0900: Atu0900 - hypothetical protein, at 891,150 to 891,896
Atu0900
Atu0901: Atu0901 - 6-O-methylguanine-DNA methyltransferase, at 892,046 to 893,182
Atu0901
Position (kb) 890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 889.229 kb on - strand, within Atu0897 at 889.254 kb on + strand, within Atu0897 at 889.298 kb on + strand at 889.298 kb on + strand at 889.330 kb on + strand at 889.332 kb on + strand at 889.338 kb on - strand at 889.340 kb on - strand at 889.365 kb on + strand at 889.400 kb on + strand at 889.514 kb on + strand at 889.515 kb on + strand at 889.574 kb on + strand at 889.607 kb on + strand at 889.631 kb on + strand at 889.803 kb on + strand, within Atu0898 at 889.811 kb on - strand, within Atu0898 at 889.815 kb on + strand, within Atu0898 at 889.815 kb on + strand, within Atu0898 at 889.823 kb on - strand, within Atu0898 at 889.823 kb on - strand, within Atu0898 at 889.833 kb on - strand, within Atu0898 at 889.852 kb on + strand, within Atu0898 at 889.888 kb on + strand, within Atu0898 at 889.896 kb on - strand, within Atu0898 at 889.911 kb on + strand, within Atu0898 at 889.952 kb on + strand, within Atu0898 at 889.960 kb on - strand, within Atu0898 at 889.960 kb on - strand, within Atu0898 at 889.962 kb on - strand, within Atu0898 at 890.016 kb on + strand, within Atu0898 at 890.021 kb on + strand, within Atu0898 at 890.029 kb on - strand, within Atu0898 at 890.169 kb on - strand at 890.183 kb on + strand at 890.191 kb on - strand at 890.298 kb on + strand, within Atu0899 at 890.503 kb on - strand, within Atu0899 at 890.514 kb on - strand, within Atu0899 at 890.526 kb on - strand, within Atu0899 at 890.544 kb on + strand, within Atu0899 at 890.669 kb on - strand, within Atu0899 at 890.688 kb on + strand, within Atu0899 at 890.821 kb on + strand, within Atu0899 at 890.821 kb on + strand, within Atu0899 at 890.827 kb on - strand, within Atu0899 at 890.912 kb on - strand, within Atu0899 at 890.953 kb on + strand, within Atu0899 at 891.001 kb on - strand, within Atu0899 at 891.059 kb on + strand at 891.138 kb on + strand at 891.138 kb on + strand at 891.146 kb on + strand at 891.146 kb on + strand at 891.146 kb on + strand at 891.146 kb on + strand at 891.146 kb on - strand at 891.154 kb on - strand at 891.156 kb on - strand at 891.156 kb on - strand at 891.236 kb on + strand, within Atu0900 at 891.285 kb on - strand, within Atu0900 at 891.292 kb on - strand, within Atu0900 at 891.309 kb on - strand, within Atu0900 at 891.325 kb on - strand, within Atu0900 at 891.383 kb on - strand, within Atu0900 at 891.436 kb on + strand, within Atu0900 at 891.436 kb on + strand, within Atu0900 at 891.612 kb on - strand, within Atu0900 at 891.621 kb on + strand, within Atu0900 at 891.715 kb on + strand, within Atu0900 at 891.715 kb on + strand, within Atu0900 at 891.723 kb on - strand, within Atu0900 at 891.723 kb on - strand, within Atu0900 at 891.790 kb on + strand, within Atu0900 at 891.798 kb on - strand, within Atu0900 at 891.798 kb on - strand, within Atu0900 at 891.812 kb on + strand, within Atu0900 at 891.820 kb on - strand, within Atu0900 at 891.867 kb on + strand at 891.875 kb on - strand at 891.915 kb on - strand at 891.974 kb on + strand at 891.996 kb on - strand at 892.025 kb on - strand at 892.100 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Saccharic potassium salt (C) remove 889,229 - Atu0897 0.88 +0.6 889,254 + Atu0897 0.90 -0.6 889,298 + +2.1 889,298 + -0.3 889,330 + -0.4 889,332 + -1.4 889,338 - +1.4 889,340 - -0.2 889,365 + -0.0 889,400 + -0.7 889,514 + +0.9 889,515 + -2.0 889,574 + -0.4 889,607 + -0.5 889,631 + -1.0 889,803 + Atu0898 0.27 -0.6 889,811 - Atu0898 0.29 -0.0 889,815 + Atu0898 0.30 -0.6 889,815 + Atu0898 0.30 -0.8 889,823 - Atu0898 0.32 -0.3 889,823 - Atu0898 0.32 +0.4 889,833 - Atu0898 0.35 -0.3 889,852 + Atu0898 0.39 +0.0 889,888 + Atu0898 0.48 +1.0 889,896 - Atu0898 0.50 -1.0 889,911 + Atu0898 0.54 -0.9 889,952 + Atu0898 0.64 +0.2 889,960 - Atu0898 0.66 -0.3 889,960 - Atu0898 0.66 -0.0 889,962 - Atu0898 0.67 +0.3 890,016 + Atu0898 0.80 -0.5 890,021 + Atu0898 0.81 -0.8 890,029 - Atu0898 0.83 -0.1 890,169 - -0.6 890,183 + -0.2 890,191 - +1.5 890,298 + Atu0899 0.11 +3.4 890,503 - Atu0899 0.33 +0.5 890,514 - Atu0899 0.35 +1.2 890,526 - Atu0899 0.36 +0.3 890,544 + Atu0899 0.38 +3.7 890,669 - Atu0899 0.52 +1.8 890,688 + Atu0899 0.54 -0.3 890,821 + Atu0899 0.68 +0.5 890,821 + Atu0899 0.68 -1.9 890,827 - Atu0899 0.69 -0.9 890,912 - Atu0899 0.78 +0.2 890,953 + Atu0899 0.83 -0.0 891,001 - Atu0899 0.88 +0.4 891,059 + -1.6 891,138 + +1.5 891,138 + -0.1 891,146 + -1.2 891,146 + -0.2 891,146 + +0.6 891,146 + +0.4 891,146 - +0.3 891,154 - -0.6 891,156 - +0.1 891,156 - +1.5 891,236 + Atu0900 0.12 -0.0 891,285 - Atu0900 0.18 -0.2 891,292 - Atu0900 0.19 -0.2 891,309 - Atu0900 0.21 -1.0 891,325 - Atu0900 0.23 -0.4 891,383 - Atu0900 0.31 -0.9 891,436 + Atu0900 0.38 +0.9 891,436 + Atu0900 0.38 +0.6 891,612 - Atu0900 0.62 +0.4 891,621 + Atu0900 0.63 +0.2 891,715 + Atu0900 0.76 -0.5 891,715 + Atu0900 0.76 -1.3 891,723 - Atu0900 0.77 +0.5 891,723 - Atu0900 0.77 +0.8 891,790 + Atu0900 0.86 -0.3 891,798 - Atu0900 0.87 -0.2 891,798 - Atu0900 0.87 +1.1 891,812 + Atu0900 0.89 +0.5 891,820 - Atu0900 0.90 -0.6 891,867 + -2.8 891,875 - -0.4 891,915 - -1.1 891,974 + -0.6 891,996 - +0.2 892,025 - -0.9 892,100 + +0.3
Or see this region's nucleotide sequence