Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_849

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_847 and PfGW456L13_848 overlap by 1 nucleotidesPfGW456L13_848 and PfGW456L13_849 are separated by 490 nucleotidesPfGW456L13_849 and PfGW456L13_850 are separated by 7 nucleotides PfGW456L13_847 - hypothetical protein, at 953,628 to 953,906 _847 PfGW456L13_848 - Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly, at 953,906 to 954,238 _848 PfGW456L13_849 - Regulator of nucleoside diphosphate kinase, at 954,729 to 955,139 _849 PfGW456L13_850 - Adenylate cyclase (EC 4.6.1.1), at 955,147 to 957,990 _850 Position (kb) 954 955 956Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 953.734 kb on - strand, within PfGW456L13_847at 953.735 kb on + strand, within PfGW456L13_847at 953.759 kb on - strand, within PfGW456L13_847at 953.830 kb on - strand, within PfGW456L13_847at 953.858 kb on + strand, within PfGW456L13_847at 953.859 kb on - strand, within PfGW456L13_847at 954.122 kb on + strand, within PfGW456L13_848at 954.190 kb on + strand, within PfGW456L13_848at 954.190 kb on + strand, within PfGW456L13_848at 954.191 kb on - strand, within PfGW456L13_848at 954.191 kb on - strand, within PfGW456L13_848at 954.283 kb on - strandat 954.283 kb on - strandat 954.380 kb on + strandat 954.380 kb on + strandat 954.381 kb on - strandat 954.381 kb on - strandat 954.381 kb on - strandat 954.413 kb on + strandat 954.413 kb on + strandat 954.414 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.573 kb on + strandat 954.573 kb on + strandat 954.573 kb on + strandat 954.573 kb on + strandat 954.574 kb on - strandat 954.574 kb on - strandat 954.608 kb on - strandat 954.608 kb on - strandat 954.610 kb on - strandat 954.627 kb on - strandat 954.939 kb on + strand, within PfGW456L13_849at 954.940 kb on - strand, within PfGW456L13_849at 954.940 kb on - strand, within PfGW456L13_849at 954.940 kb on - strand, within PfGW456L13_849at 955.205 kb on + strandat 955.205 kb on + strandat 955.206 kb on - strandat 955.206 kb on - strandat 955.206 kb on - strandat 955.206 kb on - strandat 955.265 kb on + strandat 955.265 kb on + strandat 955.265 kb on + strandat 955.265 kb on + strandat 955.265 kb on + strandat 955.265 kb on + strandat 955.266 kb on - strandat 955.266 kb on - strandat 955.266 kb on - strandat 955.266 kb on - strandat 955.266 kb on - strandat 955.266 kb on - strandat 955.266 kb on - strandat 955.374 kb on - strandat 955.374 kb on - strandat 955.374 kb on - strandat 955.430 kb on + strandat 955.430 kb on + strandat 955.430 kb on + strandat 955.430 kb on + strandat 955.430 kb on + strandat 955.517 kb on + strand, within PfGW456L13_850at 955.517 kb on + strand, within PfGW456L13_850at 955.517 kb on + strand, within PfGW456L13_850at 955.577 kb on + strand, within PfGW456L13_850at 955.679 kb on + strand, within PfGW456L13_850at 955.679 kb on + strand, within PfGW456L13_850at 955.679 kb on + strand, within PfGW456L13_850at 955.679 kb on + strand, within PfGW456L13_850at 955.679 kb on + strand, within PfGW456L13_850at 955.680 kb on - strand, within PfGW456L13_850at 955.680 kb on - strand, within PfGW456L13_850at 955.680 kb on - strand, within PfGW456L13_850at 955.680 kb on - strand, within PfGW456L13_850at 955.680 kb on - strand, within PfGW456L13_850at 955.680 kb on - strand, within PfGW456L13_850at 955.708 kb on - strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.709 kb on + strand, within PfGW456L13_850at 955.710 kb on - strand, within PfGW456L13_850at 955.710 kb on - strand, within PfGW456L13_850at 955.710 kb on - strand, within PfGW456L13_850at 955.802 kb on + strand, within PfGW456L13_850at 955.802 kb on + strand, within PfGW456L13_850at 955.802 kb on + strand, within PfGW456L13_850at 955.802 kb on + strand, within PfGW456L13_850at 955.898 kb on + strand, within PfGW456L13_850at 955.898 kb on + strand, within PfGW456L13_850at 955.899 kb on - strand, within PfGW456L13_850at 955.899 kb on - strand, within PfGW456L13_850at 955.899 kb on - strand, within PfGW456L13_850at 955.899 kb on - strand, within PfGW456L13_850at 956.069 kb on + strand, within PfGW456L13_850at 956.070 kb on - strand, within PfGW456L13_850

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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953,734 - PfGW456L13_847 0.38 +1.2
953,735 + PfGW456L13_847 0.38 +0.9
953,759 - PfGW456L13_847 0.47 -0.4
953,830 - PfGW456L13_847 0.72 -2.7
953,858 + PfGW456L13_847 0.82 +0.9
953,859 - PfGW456L13_847 0.83 +1.6
954,122 + PfGW456L13_848 0.65 -1.1
954,190 + PfGW456L13_848 0.85 +0.3
954,190 + PfGW456L13_848 0.85 -0.2
954,191 - PfGW456L13_848 0.86 -0.8
954,191 - PfGW456L13_848 0.86 +1.0
954,283 - +1.0
954,283 - -1.6
954,380 + +1.3
954,380 + +1.1
954,381 - -1.1
954,381 - -1.1
954,381 - +1.1
954,413 + -0.0
954,413 + -4.0
954,414 - +1.7
954,460 - -2.4
954,460 - -2.0
954,573 + +2.3
954,573 + -1.2
954,573 + +1.8
954,573 + -3.7
954,574 - +1.3
954,574 - +2.3
954,608 - +2.2
954,608 - -3.5
954,610 - +1.8
954,627 - +0.7
954,939 + PfGW456L13_849 0.51 +0.9
954,940 - PfGW456L13_849 0.51 +0.6
954,940 - PfGW456L13_849 0.51 -2.9
954,940 - PfGW456L13_849 0.51 +1.7
955,205 + -4.6
955,205 + -1.7
955,206 - +1.1
955,206 - -0.5
955,206 - +0.8
955,206 - +1.1
955,265 + +1.8
955,265 + -2.1
955,265 + -1.0
955,265 + +2.9
955,265 + -0.6
955,265 + -2.8
955,266 - -1.4
955,266 - +0.9
955,266 - -0.8
955,266 - +0.9
955,266 - -1.8
955,266 - +1.0
955,266 - -0.1
955,374 - -3.0
955,374 - -1.0
955,374 - -0.5
955,430 + +0.0
955,430 + +1.7
955,430 + +0.4
955,430 + +1.8
955,430 + -0.3
955,517 + PfGW456L13_850 0.13 -0.8
955,517 + PfGW456L13_850 0.13 +1.2
955,517 + PfGW456L13_850 0.13 -2.1
955,577 + PfGW456L13_850 0.15 +1.5
955,679 + PfGW456L13_850 0.19 +0.6
955,679 + PfGW456L13_850 0.19 +0.6
955,679 + PfGW456L13_850 0.19 +0.8
955,679 + PfGW456L13_850 0.19 +1.5
955,679 + PfGW456L13_850 0.19 -2.0
955,680 - PfGW456L13_850 0.19 -0.4
955,680 - PfGW456L13_850 0.19 +1.0
955,680 - PfGW456L13_850 0.19 -2.4
955,680 - PfGW456L13_850 0.19 +0.6
955,680 - PfGW456L13_850 0.19 -1.2
955,680 - PfGW456L13_850 0.19 +0.6
955,708 - PfGW456L13_850 0.20 -1.1
955,709 + PfGW456L13_850 0.20 +1.5
955,709 + PfGW456L13_850 0.20 -1.6
955,709 + PfGW456L13_850 0.20 -2.2
955,709 + PfGW456L13_850 0.20 -3.9
955,709 + PfGW456L13_850 0.20 -1.4
955,709 + PfGW456L13_850 0.20 -0.9
955,709 + PfGW456L13_850 0.20 -0.5
955,709 + PfGW456L13_850 0.20 +1.0
955,709 + PfGW456L13_850 0.20 +1.8
955,709 + PfGW456L13_850 0.20 +0.9
955,709 + PfGW456L13_850 0.20 +1.8
955,710 - PfGW456L13_850 0.20 +0.8
955,710 - PfGW456L13_850 0.20 +0.2
955,710 - PfGW456L13_850 0.20 +0.4
955,802 + PfGW456L13_850 0.23 -0.1
955,802 + PfGW456L13_850 0.23 +1.0
955,802 + PfGW456L13_850 0.23 +0.5
955,802 + PfGW456L13_850 0.23 +0.6
955,898 + PfGW456L13_850 0.26 -2.0
955,898 + PfGW456L13_850 0.26 +2.5
955,899 - PfGW456L13_850 0.26 -0.9
955,899 - PfGW456L13_850 0.26 -1.5
955,899 - PfGW456L13_850 0.26 +1.4
955,899 - PfGW456L13_850 0.26 +0.5
956,069 + PfGW456L13_850 0.32 -0.6
956,070 - PfGW456L13_850 0.32 +1.9

Or see this region's nucleotide sequence