Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_777

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_776 and PfGW456L13_777 are separated by 245 nucleotidesPfGW456L13_777 and PfGW456L13_778 are separated by 138 nucleotidesPfGW456L13_778 and PfGW456L13_779 are separated by 67 nucleotides PfGW456L13_776 - MotA/TolQ/ExbB proton channel family protein, at 880,430 to 881,344 _776 PfGW456L13_777 - Nucleoside-diphosphate-sugar epimerases, at 881,590 to 882,447 _777 PfGW456L13_778 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 882,586 to 883,326 _778 PfGW456L13_779 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 883,394 to 883,774 _779 Position (kb) 881 882 883Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 881.507 kb on - strandat 881.507 kb on - strandat 881.507 kb on - strandat 881.509 kb on + strandat 881.510 kb on - strandat 881.532 kb on + strandat 881.532 kb on + strandat 881.533 kb on - strandat 881.533 kb on - strandat 881.533 kb on - strandat 881.533 kb on - strandat 881.536 kb on - strandat 881.601 kb on + strandat 881.601 kb on + strandat 881.785 kb on + strand, within PfGW456L13_777at 881.794 kb on + strand, within PfGW456L13_777at 881.794 kb on + strand, within PfGW456L13_777at 881.794 kb on + strand, within PfGW456L13_777at 881.794 kb on + strand, within PfGW456L13_777at 881.795 kb on - strand, within PfGW456L13_777at 881.795 kb on - strand, within PfGW456L13_777at 881.795 kb on - strand, within PfGW456L13_777at 881.795 kb on - strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.842 kb on + strand, within PfGW456L13_777at 881.843 kb on - strand, within PfGW456L13_777at 881.843 kb on - strand, within PfGW456L13_777at 881.843 kb on - strand, within PfGW456L13_777at 881.932 kb on + strand, within PfGW456L13_777at 882.051 kb on + strand, within PfGW456L13_777at 882.051 kb on + strand, within PfGW456L13_777at 882.052 kb on - strand, within PfGW456L13_777at 882.073 kb on + strand, within PfGW456L13_777at 882.073 kb on + strand, within PfGW456L13_777at 882.073 kb on + strand, within PfGW456L13_777at 882.073 kb on + strand, within PfGW456L13_777at 882.074 kb on - strand, within PfGW456L13_777at 882.074 kb on - strand, within PfGW456L13_777at 882.074 kb on - strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.145 kb on + strand, within PfGW456L13_777at 882.146 kb on - strand, within PfGW456L13_777at 882.146 kb on - strand, within PfGW456L13_777at 882.146 kb on - strand, within PfGW456L13_777at 882.235 kb on + strand, within PfGW456L13_777at 882.236 kb on - strand, within PfGW456L13_777at 882.236 kb on - strand, within PfGW456L13_777at 882.236 kb on - strand, within PfGW456L13_777at 882.295 kb on + strand, within PfGW456L13_777at 882.296 kb on - strand, within PfGW456L13_777at 882.296 kb on - strand, within PfGW456L13_777at 882.360 kb on + strand, within PfGW456L13_777at 882.360 kb on + strand, within PfGW456L13_777at 882.360 kb on + strand, within PfGW456L13_777at 882.361 kb on - strand, within PfGW456L13_777at 882.361 kb on - strand, within PfGW456L13_777at 882.361 kb on - strand, within PfGW456L13_777at 882.398 kb on - strandat 882.461 kb on + strandat 882.462 kb on - strandat 882.500 kb on + strandat 882.500 kb on + strandat 882.501 kb on - strandat 882.501 kb on - strandat 882.526 kb on + strandat 882.526 kb on + strandat 882.527 kb on - strandat 882.527 kb on - strandat 882.587 kb on + strandat 882.587 kb on + strandat 882.587 kb on + strandat 882.587 kb on + strandat 882.588 kb on - strandat 882.588 kb on - strandat 882.626 kb on + strandat 882.627 kb on - strandat 882.627 kb on - strandat 882.791 kb on + strand, within PfGW456L13_778at 882.792 kb on - strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.902 kb on + strand, within PfGW456L13_778at 882.902 kb on + strand, within PfGW456L13_778at 882.902 kb on + strand, within PfGW456L13_778at 882.903 kb on - strand, within PfGW456L13_778at 882.903 kb on - strand, within PfGW456L13_778at 882.959 kb on - strand, within PfGW456L13_778at 883.050 kb on - strand, within PfGW456L13_778at 883.050 kb on - strand, within PfGW456L13_778at 883.121 kb on + strand, within PfGW456L13_778at 883.172 kb on + strand, within PfGW456L13_778at 883.352 kb on - strandat 883.389 kb on - strandat 883.395 kb on + strandat 883.395 kb on + strandat 883.395 kb on + strandat 883.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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881,507 - +0.0
881,507 - +0.1
881,507 - +0.3
881,509 + -0.3
881,510 - -2.1
881,532 + -2.0
881,532 + +0.4
881,533 - +0.7
881,533 - -2.8
881,533 - -3.9
881,533 - -1.2
881,536 - -0.2
881,601 + -2.3
881,601 + -0.1
881,785 + PfGW456L13_777 0.23 -3.0
881,794 + PfGW456L13_777 0.24 +0.0
881,794 + PfGW456L13_777 0.24 -3.1
881,794 + PfGW456L13_777 0.24 -3.0
881,794 + PfGW456L13_777 0.24 +0.6
881,795 - PfGW456L13_777 0.24 -2.4
881,795 - PfGW456L13_777 0.24 -1.6
881,795 - PfGW456L13_777 0.24 +1.3
881,795 - PfGW456L13_777 0.24 -1.6
881,842 + PfGW456L13_777 0.29 +0.4
881,842 + PfGW456L13_777 0.29 -0.6
881,842 + PfGW456L13_777 0.29 +0.3
881,842 + PfGW456L13_777 0.29 -1.0
881,842 + PfGW456L13_777 0.29 +0.6
881,842 + PfGW456L13_777 0.29 -2.2
881,842 + PfGW456L13_777 0.29 +0.5
881,843 - PfGW456L13_777 0.29 -1.5
881,843 - PfGW456L13_777 0.29 +0.9
881,843 - PfGW456L13_777 0.29 -1.0
881,932 + PfGW456L13_777 0.40 -0.3
882,051 + PfGW456L13_777 0.54 +1.8
882,051 + PfGW456L13_777 0.54 -2.0
882,052 - PfGW456L13_777 0.54 +0.4
882,073 + PfGW456L13_777 0.56 -1.4
882,073 + PfGW456L13_777 0.56 -2.3
882,073 + PfGW456L13_777 0.56 -3.2
882,073 + PfGW456L13_777 0.56 -0.9
882,074 - PfGW456L13_777 0.56 -0.5
882,074 - PfGW456L13_777 0.56 +0.4
882,074 - PfGW456L13_777 0.56 +1.1
882,145 + PfGW456L13_777 0.65 -0.6
882,145 + PfGW456L13_777 0.65 +0.6
882,145 + PfGW456L13_777 0.65 -1.9
882,145 + PfGW456L13_777 0.65 -0.2
882,145 + PfGW456L13_777 0.65 -0.3
882,145 + PfGW456L13_777 0.65 +1.5
882,146 - PfGW456L13_777 0.65 +2.3
882,146 - PfGW456L13_777 0.65 -2.4
882,146 - PfGW456L13_777 0.65 -3.0
882,235 + PfGW456L13_777 0.75 +1.3
882,236 - PfGW456L13_777 0.75 -0.5
882,236 - PfGW456L13_777 0.75 -0.9
882,236 - PfGW456L13_777 0.75 -3.2
882,295 + PfGW456L13_777 0.82 -1.9
882,296 - PfGW456L13_777 0.82 -1.3
882,296 - PfGW456L13_777 0.82 +1.1
882,360 + PfGW456L13_777 0.90 +1.1
882,360 + PfGW456L13_777 0.90 -0.6
882,360 + PfGW456L13_777 0.90 -0.2
882,361 - PfGW456L13_777 0.90 +0.6
882,361 - PfGW456L13_777 0.90 +0.7
882,361 - PfGW456L13_777 0.90 -3.6
882,398 - -0.1
882,461 + -0.4
882,462 - +2.5
882,500 + -1.8
882,500 + +0.6
882,501 - -2.6
882,501 - -1.2
882,526 + -3.0
882,526 + -1.0
882,527 - -1.9
882,527 - +0.6
882,587 + -2.9
882,587 + +0.5
882,587 + -3.3
882,587 + +1.0
882,588 - +1.4
882,588 - -0.4
882,626 + +0.2
882,627 - -1.8
882,627 - -3.1
882,791 + PfGW456L13_778 0.28 -2.9
882,792 - PfGW456L13_778 0.28 -1.8
882,893 + PfGW456L13_778 0.41 -1.3
882,893 + PfGW456L13_778 0.41 -2.1
882,893 + PfGW456L13_778 0.41 +0.9
882,893 + PfGW456L13_778 0.41 +0.4
882,893 + PfGW456L13_778 0.41 +0.4
882,893 + PfGW456L13_778 0.41 -0.4
882,893 + PfGW456L13_778 0.41 +0.8
882,894 - PfGW456L13_778 0.42 +1.5
882,894 - PfGW456L13_778 0.42 -0.5
882,894 - PfGW456L13_778 0.42 -1.7
882,894 - PfGW456L13_778 0.42 +1.1
882,894 - PfGW456L13_778 0.42 -2.3
882,894 - PfGW456L13_778 0.42 +2.9
882,902 + PfGW456L13_778 0.43 -0.4
882,902 + PfGW456L13_778 0.43 -1.6
882,902 + PfGW456L13_778 0.43 -0.9
882,903 - PfGW456L13_778 0.43 +1.2
882,903 - PfGW456L13_778 0.43 -0.4
882,959 - PfGW456L13_778 0.50 -2.0
883,050 - PfGW456L13_778 0.63 +0.4
883,050 - PfGW456L13_778 0.63 -2.3
883,121 + PfGW456L13_778 0.72 +0.7
883,172 + PfGW456L13_778 0.79 -0.5
883,352 - +0.9
883,389 - -1.0
883,395 + +0.3
883,395 + -0.3
883,395 + -0.2
883,396 - +0.8

Or see this region's nucleotide sequence