Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_463

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_461 and PfGW456L13_462 are separated by 26 nucleotidesPfGW456L13_462 and PfGW456L13_463 are separated by 21 nucleotidesPfGW456L13_463 and PfGW456L13_464 are separated by 77 nucleotides PfGW456L13_461 - putative RecF protein, at 526,169 to 527,365 _461 PfGW456L13_462 - YD repeat protein, at 527,392 to 528,111 _462 PfGW456L13_463 - hypothetical protein, at 528,133 to 528,981 _463 PfGW456L13_464 - Methionine ABC transporter substrate-binding protein, at 529,059 to 529,841 _464 Position (kb) 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 527.218 kb on - strand, within PfGW456L13_461at 527.390 kb on + strandat 527.390 kb on + strandat 527.391 kb on - strandat 527.472 kb on + strand, within PfGW456L13_462at 527.472 kb on + strand, within PfGW456L13_462at 527.473 kb on - strand, within PfGW456L13_462at 527.473 kb on - strand, within PfGW456L13_462at 527.473 kb on - strand, within PfGW456L13_462at 527.482 kb on - strand, within PfGW456L13_462at 527.482 kb on - strand, within PfGW456L13_462at 527.482 kb on - strand, within PfGW456L13_462at 527.553 kb on + strand, within PfGW456L13_462at 527.553 kb on + strand, within PfGW456L13_462at 527.554 kb on - strand, within PfGW456L13_462at 527.554 kb on - strand, within PfGW456L13_462at 527.611 kb on + strand, within PfGW456L13_462at 527.611 kb on + strand, within PfGW456L13_462at 527.612 kb on - strand, within PfGW456L13_462at 527.612 kb on - strand, within PfGW456L13_462at 527.612 kb on - strand, within PfGW456L13_462at 527.612 kb on - strand, within PfGW456L13_462at 527.620 kb on + strand, within PfGW456L13_462at 527.621 kb on - strand, within PfGW456L13_462at 527.621 kb on - strand, within PfGW456L13_462at 527.621 kb on - strand, within PfGW456L13_462at 527.727 kb on + strand, within PfGW456L13_462at 527.727 kb on + strand, within PfGW456L13_462at 527.728 kb on - strand, within PfGW456L13_462at 527.728 kb on - strand, within PfGW456L13_462at 527.728 kb on - strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.743 kb on + strand, within PfGW456L13_462at 527.752 kb on - strand, within PfGW456L13_462at 527.766 kb on + strand, within PfGW456L13_462at 527.766 kb on + strand, within PfGW456L13_462at 527.767 kb on - strand, within PfGW456L13_462at 527.788 kb on - strand, within PfGW456L13_462at 527.788 kb on - strand, within PfGW456L13_462at 527.788 kb on - strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.876 kb on + strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.877 kb on - strand, within PfGW456L13_462at 527.883 kb on - strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.955 kb on + strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 527.956 kb on - strand, within PfGW456L13_462at 528.047 kb on + strandat 528.047 kb on + strandat 528.047 kb on + strandat 528.047 kb on + strandat 528.048 kb on - strandat 528.048 kb on - strandat 528.048 kb on - strandat 528.048 kb on - strandat 528.054 kb on - strandat 528.054 kb on - strandat 528.054 kb on - strandat 528.153 kb on - strandat 528.243 kb on - strand, within PfGW456L13_463at 528.243 kb on - strand, within PfGW456L13_463at 528.283 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.318 kb on + strand, within PfGW456L13_463at 528.319 kb on - strand, within PfGW456L13_463at 528.319 kb on - strand, within PfGW456L13_463at 528.319 kb on - strand, within PfGW456L13_463at 528.383 kb on + strand, within PfGW456L13_463at 528.384 kb on - strand, within PfGW456L13_463at 528.491 kb on + strand, within PfGW456L13_463at 528.491 kb on + strand, within PfGW456L13_463at 528.492 kb on - strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.585 kb on + strand, within PfGW456L13_463at 528.586 kb on - strand, within PfGW456L13_463at 528.586 kb on - strand, within PfGW456L13_463at 528.586 kb on - strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.588 kb on + strand, within PfGW456L13_463at 528.589 kb on - strand, within PfGW456L13_463at 528.589 kb on - strand, within PfGW456L13_463at 528.589 kb on - strand, within PfGW456L13_463at 528.589 kb on - strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.649 kb on + strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.650 kb on - strand, within PfGW456L13_463at 528.660 kb on - strand, within PfGW456L13_463at 528.667 kb on - strand, within PfGW456L13_463at 528.763 kb on + strand, within PfGW456L13_463at 528.763 kb on + strand, within PfGW456L13_463at 528.763 kb on + strand, within PfGW456L13_463at 528.763 kb on + strand, within PfGW456L13_463at 528.764 kb on - strand, within PfGW456L13_463at 528.764 kb on - strand, within PfGW456L13_463at 528.764 kb on - strand, within PfGW456L13_463at 528.800 kb on + strand, within PfGW456L13_463at 528.800 kb on + strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.801 kb on - strand, within PfGW456L13_463at 528.805 kb on + strand, within PfGW456L13_463at 528.806 kb on - strand, within PfGW456L13_463at 528.979 kb on + strandat 528.979 kb on + strandat 528.979 kb on + strandat 528.980 kb on - strandat 528.980 kb on - strandat 528.980 kb on - strandat 529.011 kb on + strandat 529.087 kb on + strandat 529.087 kb on + strandat 529.088 kb on - strandat 529.088 kb on - strandat 529.088 kb on - strandat 529.088 kb on - strandat 529.195 kb on + strand, within PfGW456L13_464at 529.195 kb on + strand, within PfGW456L13_464at 529.196 kb on - strand, within PfGW456L13_464at 529.196 kb on - strand, within PfGW456L13_464at 529.196 kb on - strand, within PfGW456L13_464at 529.196 kb on - strand, within PfGW456L13_464at 529.196 kb on - strand, within PfGW456L13_464at 529.261 kb on + strand, within PfGW456L13_464at 529.261 kb on + strand, within PfGW456L13_464at 529.262 kb on - strand, within PfGW456L13_464at 529.262 kb on - strand, within PfGW456L13_464at 529.615 kb on + strand, within PfGW456L13_464at 529.615 kb on + strand, within PfGW456L13_464at 529.615 kb on + strand, within PfGW456L13_464at 529.615 kb on + strand, within PfGW456L13_464at 529.615 kb on + strand, within PfGW456L13_464at 529.615 kb on + strand, within PfGW456L13_464at 529.616 kb on - strand, within PfGW456L13_464at 529.616 kb on - strand, within PfGW456L13_464at 529.616 kb on - strand, within PfGW456L13_464at 529.616 kb on - strand, within PfGW456L13_464at 529.616 kb on - strand, within PfGW456L13_464at 529.663 kb on + strand, within PfGW456L13_464at 529.663 kb on + strand, within PfGW456L13_464at 529.664 kb on - strand, within PfGW456L13_464at 529.911 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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527,218 - PfGW456L13_461 0.88 -0.9
527,390 + -0.8
527,390 + -3.0
527,391 - -1.0
527,472 + PfGW456L13_462 0.11 -2.8
527,472 + PfGW456L13_462 0.11 +3.2
527,473 - PfGW456L13_462 0.11 -1.9
527,473 - PfGW456L13_462 0.11 +0.5
527,473 - PfGW456L13_462 0.11 +0.9
527,482 - PfGW456L13_462 0.12 +0.5
527,482 - PfGW456L13_462 0.12 +0.2
527,482 - PfGW456L13_462 0.12 -2.3
527,553 + PfGW456L13_462 0.22 -2.6
527,553 + PfGW456L13_462 0.22 -3.1
527,554 - PfGW456L13_462 0.23 +0.4
527,554 - PfGW456L13_462 0.23 +0.7
527,611 + PfGW456L13_462 0.30 +0.2
527,611 + PfGW456L13_462 0.30 -0.4
527,612 - PfGW456L13_462 0.31 -2.0
527,612 - PfGW456L13_462 0.31 +0.9
527,612 - PfGW456L13_462 0.31 +0.3
527,612 - PfGW456L13_462 0.31 -0.6
527,620 + PfGW456L13_462 0.32 +0.8
527,621 - PfGW456L13_462 0.32 -2.6
527,621 - PfGW456L13_462 0.32 +0.7
527,621 - PfGW456L13_462 0.32 -1.0
527,727 + PfGW456L13_462 0.47 +1.0
527,727 + PfGW456L13_462 0.47 +0.5
527,728 - PfGW456L13_462 0.47 +1.1
527,728 - PfGW456L13_462 0.47 -2.5
527,728 - PfGW456L13_462 0.47 +0.6
527,743 + PfGW456L13_462 0.49 +1.0
527,743 + PfGW456L13_462 0.49 -1.9
527,743 + PfGW456L13_462 0.49 -0.7
527,743 + PfGW456L13_462 0.49 -1.0
527,743 + PfGW456L13_462 0.49 -1.2
527,752 - PfGW456L13_462 0.50 -3.0
527,766 + PfGW456L13_462 0.52 -1.6
527,766 + PfGW456L13_462 0.52 -1.5
527,767 - PfGW456L13_462 0.52 -1.1
527,788 - PfGW456L13_462 0.55 +2.8
527,788 - PfGW456L13_462 0.55 +1.8
527,788 - PfGW456L13_462 0.55 +0.5
527,876 + PfGW456L13_462 0.67 -0.1
527,876 + PfGW456L13_462 0.67 -1.7
527,876 + PfGW456L13_462 0.67 +1.1
527,876 + PfGW456L13_462 0.67 +1.4
527,876 + PfGW456L13_462 0.67 -0.2
527,876 + PfGW456L13_462 0.67 -2.9
527,876 + PfGW456L13_462 0.67 +1.5
527,876 + PfGW456L13_462 0.67 +0.1
527,877 - PfGW456L13_462 0.67 -0.8
527,877 - PfGW456L13_462 0.67 +1.9
527,877 - PfGW456L13_462 0.67 -1.3
527,877 - PfGW456L13_462 0.67 -1.2
527,877 - PfGW456L13_462 0.67 +1.2
527,877 - PfGW456L13_462 0.67 +1.2
527,883 - PfGW456L13_462 0.68 +0.7
527,955 + PfGW456L13_462 0.78 -1.0
527,955 + PfGW456L13_462 0.78 -0.3
527,955 + PfGW456L13_462 0.78 -2.6
527,955 + PfGW456L13_462 0.78 +0.6
527,955 + PfGW456L13_462 0.78 +2.7
527,955 + PfGW456L13_462 0.78 -1.7
527,955 + PfGW456L13_462 0.78 -3.0
527,956 - PfGW456L13_462 0.78 +0.2
527,956 - PfGW456L13_462 0.78 -1.1
527,956 - PfGW456L13_462 0.78 -0.1
527,956 - PfGW456L13_462 0.78 +0.7
527,956 - PfGW456L13_462 0.78 +1.9
527,956 - PfGW456L13_462 0.78 +0.2
527,956 - PfGW456L13_462 0.78 +1.0
527,956 - PfGW456L13_462 0.78 -2.3
528,047 + +1.7
528,047 + -1.0
528,047 + -3.0
528,047 + -1.3
528,048 - +0.7
528,048 - -0.4
528,048 - -1.1
528,048 - +1.4
528,054 - +0.3
528,054 - -2.9
528,054 - +0.4
528,153 - -0.6
528,243 - PfGW456L13_463 0.13 -0.8
528,243 - PfGW456L13_463 0.13 -2.1
528,283 + PfGW456L13_463 0.18 +1.9
528,318 + PfGW456L13_463 0.22 +0.7
528,318 + PfGW456L13_463 0.22 -0.2
528,318 + PfGW456L13_463 0.22 -2.2
528,318 + PfGW456L13_463 0.22 -1.2
528,318 + PfGW456L13_463 0.22 +0.6
528,319 - PfGW456L13_463 0.22 +0.1
528,319 - PfGW456L13_463 0.22 +1.1
528,319 - PfGW456L13_463 0.22 +0.4
528,383 + PfGW456L13_463 0.29 +0.5
528,384 - PfGW456L13_463 0.30 -0.1
528,491 + PfGW456L13_463 0.42 -0.2
528,491 + PfGW456L13_463 0.42 +0.5
528,492 - PfGW456L13_463 0.42 -0.7
528,585 + PfGW456L13_463 0.53 +0.0
528,585 + PfGW456L13_463 0.53 +0.4
528,585 + PfGW456L13_463 0.53 +0.4
528,585 + PfGW456L13_463 0.53 +0.4
528,585 + PfGW456L13_463 0.53 -1.2
528,585 + PfGW456L13_463 0.53 -1.3
528,585 + PfGW456L13_463 0.53 +1.2
528,585 + PfGW456L13_463 0.53 -0.3
528,586 - PfGW456L13_463 0.53 -0.3
528,586 - PfGW456L13_463 0.53 +0.9
528,586 - PfGW456L13_463 0.53 +0.6
528,588 + PfGW456L13_463 0.54 +0.3
528,588 + PfGW456L13_463 0.54 -1.4
528,588 + PfGW456L13_463 0.54 +1.1
528,588 + PfGW456L13_463 0.54 -1.0
528,588 + PfGW456L13_463 0.54 +1.9
528,588 + PfGW456L13_463 0.54 -1.4
528,588 + PfGW456L13_463 0.54 +2.0
528,588 + PfGW456L13_463 0.54 -1.3
528,588 + PfGW456L13_463 0.54 +1.4
528,589 - PfGW456L13_463 0.54 +3.4
528,589 - PfGW456L13_463 0.54 +1.6
528,589 - PfGW456L13_463 0.54 -0.8
528,589 - PfGW456L13_463 0.54 +0.1
528,649 + PfGW456L13_463 0.61 -2.5
528,649 + PfGW456L13_463 0.61 +1.6
528,649 + PfGW456L13_463 0.61 -1.1
528,649 + PfGW456L13_463 0.61 +2.7
528,649 + PfGW456L13_463 0.61 +0.3
528,649 + PfGW456L13_463 0.61 -0.0
528,650 - PfGW456L13_463 0.61 -0.4
528,650 - PfGW456L13_463 0.61 +1.2
528,650 - PfGW456L13_463 0.61 -1.0
528,650 - PfGW456L13_463 0.61 -3.4
528,650 - PfGW456L13_463 0.61 +0.1
528,650 - PfGW456L13_463 0.61 -2.6
528,660 - PfGW456L13_463 0.62 -0.5
528,667 - PfGW456L13_463 0.63 -1.0
528,763 + PfGW456L13_463 0.74 +1.8
528,763 + PfGW456L13_463 0.74 +1.0
528,763 + PfGW456L13_463 0.74 -2.3
528,763 + PfGW456L13_463 0.74 -0.1
528,764 - PfGW456L13_463 0.74 +0.1
528,764 - PfGW456L13_463 0.74 +0.7
528,764 - PfGW456L13_463 0.74 +1.0
528,800 + PfGW456L13_463 0.79 +0.5
528,800 + PfGW456L13_463 0.79 +0.1
528,801 - PfGW456L13_463 0.79 +0.2
528,801 - PfGW456L13_463 0.79 +1.7
528,801 - PfGW456L13_463 0.79 -2.1
528,801 - PfGW456L13_463 0.79 +0.9
528,801 - PfGW456L13_463 0.79 +2.2
528,801 - PfGW456L13_463 0.79 +0.4
528,801 - PfGW456L13_463 0.79 +0.9
528,805 + PfGW456L13_463 0.79 +2.1
528,806 - PfGW456L13_463 0.79 +1.2
528,979 + +0.8
528,979 + -2.5
528,979 + -0.2
528,980 - +0.2
528,980 - +0.2
528,980 - -2.2
529,011 + +1.2
529,087 + -0.2
529,087 + -2.6
529,088 - -0.5
529,088 - -2.7
529,088 - -0.4
529,088 - +1.3
529,195 + PfGW456L13_464 0.17 -2.8
529,195 + PfGW456L13_464 0.17 +1.4
529,196 - PfGW456L13_464 0.17 -0.4
529,196 - PfGW456L13_464 0.17 +0.3
529,196 - PfGW456L13_464 0.17 -1.3
529,196 - PfGW456L13_464 0.17 +0.9
529,196 - PfGW456L13_464 0.17 +0.4
529,261 + PfGW456L13_464 0.26 +1.0
529,261 + PfGW456L13_464 0.26 -0.0
529,262 - PfGW456L13_464 0.26 -2.3
529,262 - PfGW456L13_464 0.26 -3.5
529,615 + PfGW456L13_464 0.71 +1.6
529,615 + PfGW456L13_464 0.71 -3.6
529,615 + PfGW456L13_464 0.71 +1.5
529,615 + PfGW456L13_464 0.71 -3.1
529,615 + PfGW456L13_464 0.71 +2.5
529,615 + PfGW456L13_464 0.71 -1.0
529,616 - PfGW456L13_464 0.71 +1.1
529,616 - PfGW456L13_464 0.71 +0.7
529,616 - PfGW456L13_464 0.71 -1.3
529,616 - PfGW456L13_464 0.71 +1.3
529,616 - PfGW456L13_464 0.71 -0.2
529,663 + PfGW456L13_464 0.77 +1.0
529,663 + PfGW456L13_464 0.77 +1.0
529,664 - PfGW456L13_464 0.77 +0.6
529,911 + -0.2

Or see this region's nucleotide sequence