Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4582 and PfGW456L13_4583 are separated by 438 nucleotides PfGW456L13_4583 and PfGW456L13_4584 are separated by 121 nucleotides PfGW456L13_4584 and PfGW456L13_4585 are separated by 10 nucleotides
PfGW456L13_4582 - RND efflux system, outer membrane lipoprotein CmeC, at 5,113,840 to 5,115,300
_4582
PfGW456L13_4583 - PhaK-like protein, at 5,115,739 to 5,116,998
_4583
PfGW456L13_4584 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 5,117,120 to 5,117,512
_4584
PfGW456L13_4585 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 5,117,523 to 5,118,314
_4585
Position (kb) 5115
5116
5117 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5115.022 kb on + strand, within PfGW456L13_4582 at 5115.022 kb on + strand, within PfGW456L13_4582 at 5115.022 kb on + strand, within PfGW456L13_4582 at 5115.022 kb on + strand, within PfGW456L13_4582 at 5115.022 kb on + strand, within PfGW456L13_4582 at 5115.073 kb on + strand, within PfGW456L13_4582 at 5115.073 kb on + strand, within PfGW456L13_4582 at 5115.073 kb on + strand, within PfGW456L13_4582 at 5115.074 kb on - strand, within PfGW456L13_4582 at 5115.214 kb on + strand at 5115.214 kb on + strand at 5115.214 kb on + strand at 5115.214 kb on + strand at 5115.214 kb on + strand at 5115.292 kb on + strand at 5115.293 kb on - strand at 5115.310 kb on - strand at 5115.431 kb on + strand at 5115.432 kb on - strand at 5115.442 kb on + strand at 5115.442 kb on + strand at 5115.442 kb on + strand at 5115.442 kb on + strand at 5115.443 kb on - strand at 5115.443 kb on - strand at 5115.443 kb on - strand at 5115.443 kb on - strand at 5115.443 kb on - strand at 5115.543 kb on - strand at 5115.562 kb on - strand at 5115.596 kb on - strand at 5115.596 kb on - strand at 5115.722 kb on + strand at 5115.723 kb on - strand at 5115.760 kb on + strand at 5115.760 kb on + strand at 5115.760 kb on + strand at 5115.761 kb on - strand at 5115.875 kb on - strand, within PfGW456L13_4583 at 5115.878 kb on + strand, within PfGW456L13_4583 at 5115.879 kb on - strand, within PfGW456L13_4583 at 5115.879 kb on - strand, within PfGW456L13_4583 at 5115.879 kb on - strand, within PfGW456L13_4583 at 5115.879 kb on - strand, within PfGW456L13_4583 at 5115.879 kb on - strand, within PfGW456L13_4583 at 5116.009 kb on + strand, within PfGW456L13_4583 at 5116.009 kb on + strand, within PfGW456L13_4583 at 5116.010 kb on - strand, within PfGW456L13_4583 at 5116.010 kb on - strand, within PfGW456L13_4583 at 5116.376 kb on - strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.435 kb on + strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.436 kb on - strand, within PfGW456L13_4583 at 5116.513 kb on + strand, within PfGW456L13_4583 at 5116.567 kb on + strand, within PfGW456L13_4583 at 5116.567 kb on + strand, within PfGW456L13_4583 at 5116.567 kb on + strand, within PfGW456L13_4583 at 5116.567 kb on + strand, within PfGW456L13_4583 at 5116.568 kb on - strand, within PfGW456L13_4583 at 5116.568 kb on - strand, within PfGW456L13_4583 at 5116.568 kb on - strand, within PfGW456L13_4583 at 5116.568 kb on - strand, within PfGW456L13_4583 at 5116.588 kb on + strand, within PfGW456L13_4583 at 5116.588 kb on + strand, within PfGW456L13_4583 at 5116.589 kb on - strand, within PfGW456L13_4583 at 5116.589 kb on - strand, within PfGW456L13_4583 at 5116.589 kb on - strand, within PfGW456L13_4583 at 5116.606 kb on + strand, within PfGW456L13_4583 at 5116.606 kb on + strand, within PfGW456L13_4583 at 5116.606 kb on + strand, within PfGW456L13_4583 at 5116.606 kb on + strand, within PfGW456L13_4583 at 5116.606 kb on + strand, within PfGW456L13_4583 at 5116.607 kb on - strand, within PfGW456L13_4583 at 5116.607 kb on - strand, within PfGW456L13_4583 at 5116.607 kb on - strand, within PfGW456L13_4583 at 5116.690 kb on + strand, within PfGW456L13_4583 at 5116.690 kb on + strand, within PfGW456L13_4583 at 5116.691 kb on - strand, within PfGW456L13_4583 at 5116.691 kb on - strand, within PfGW456L13_4583 at 5116.691 kb on - strand, within PfGW456L13_4583 at 5116.702 kb on + strand, within PfGW456L13_4583 at 5116.702 kb on + strand, within PfGW456L13_4583 at 5116.733 kb on + strand, within PfGW456L13_4583 at 5116.733 kb on + strand, within PfGW456L13_4583 at 5116.733 kb on + strand, within PfGW456L13_4583 at 5116.734 kb on - strand at 5116.744 kb on + strand, within PfGW456L13_4583 at 5116.744 kb on + strand, within PfGW456L13_4583 at 5116.744 kb on + strand, within PfGW456L13_4583 at 5116.744 kb on + strand, within PfGW456L13_4583 at 5116.745 kb on - strand, within PfGW456L13_4583 at 5116.745 kb on - strand, within PfGW456L13_4583 at 5116.792 kb on + strand, within PfGW456L13_4583 at 5116.792 kb on + strand, within PfGW456L13_4583 at 5116.792 kb on + strand, within PfGW456L13_4583 at 5116.792 kb on + strand, within PfGW456L13_4583 at 5116.792 kb on + strand, within PfGW456L13_4583 at 5116.868 kb on - strand, within PfGW456L13_4583 at 5116.936 kb on + strand at 5116.936 kb on + strand at 5116.944 kb on + strand at 5116.979 kb on - strand at 5116.996 kb on + strand at 5116.997 kb on - strand at 5116.997 kb on - strand at 5117.042 kb on + strand at 5117.042 kb on + strand at 5117.058 kb on + strand at 5117.058 kb on + strand at 5117.122 kb on - strand at 5117.202 kb on + strand, within PfGW456L13_4584 at 5117.202 kb on + strand, within PfGW456L13_4584 at 5117.202 kb on + strand, within PfGW456L13_4584 at 5117.202 kb on + strand, within PfGW456L13_4584 at 5117.202 kb on + strand, within PfGW456L13_4584 at 5117.203 kb on - strand, within PfGW456L13_4584 at 5117.203 kb on - strand, within PfGW456L13_4584 at 5117.494 kb on - strand at 5117.517 kb on + strand at 5117.518 kb on - strand at 5117.518 kb on - strand at 5117.599 kb on + strand at 5117.599 kb on + strand at 5117.599 kb on + strand at 5117.599 kb on + strand at 5117.765 kb on - strand, within PfGW456L13_4585 at 5117.799 kb on - strand, within PfGW456L13_4585
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 5,115,022 + PfGW456L13_4582 0.81 +0.7 5,115,022 + PfGW456L13_4582 0.81 -1.0 5,115,022 + PfGW456L13_4582 0.81 +0.1 5,115,022 + PfGW456L13_4582 0.81 -2.3 5,115,022 + PfGW456L13_4582 0.81 +1.1 5,115,073 + PfGW456L13_4582 0.84 -1.9 5,115,073 + PfGW456L13_4582 0.84 -3.7 5,115,073 + PfGW456L13_4582 0.84 +2.3 5,115,074 - PfGW456L13_4582 0.84 +0.0 5,115,214 + -2.3 5,115,214 + -0.6 5,115,214 + -2.7 5,115,214 + -3.0 5,115,214 + +0.9 5,115,292 + +1.4 5,115,293 - -3.0 5,115,310 - -1.5 5,115,431 + -2.6 5,115,432 - +1.0 5,115,442 + +0.7 5,115,442 + -1.9 5,115,442 + +1.4 5,115,442 + +2.9 5,115,443 - -1.1 5,115,443 - -1.0 5,115,443 - +1.4 5,115,443 - +0.6 5,115,443 - +0.5 5,115,543 - -0.1 5,115,562 - -0.8 5,115,596 - -2.4 5,115,596 - +1.1 5,115,722 + +1.3 5,115,723 - -2.0 5,115,760 + +2.4 5,115,760 + -1.9 5,115,760 + -2.5 5,115,761 - +1.4 5,115,875 - PfGW456L13_4583 0.11 -1.1 5,115,878 + PfGW456L13_4583 0.11 +0.8 5,115,879 - PfGW456L13_4583 0.11 +1.1 5,115,879 - PfGW456L13_4583 0.11 -2.9 5,115,879 - PfGW456L13_4583 0.11 +0.8 5,115,879 - PfGW456L13_4583 0.11 +0.6 5,115,879 - PfGW456L13_4583 0.11 +0.9 5,116,009 + PfGW456L13_4583 0.21 +0.1 5,116,009 + PfGW456L13_4583 0.21 -2.1 5,116,010 - PfGW456L13_4583 0.22 +1.0 5,116,010 - PfGW456L13_4583 0.22 +0.9 5,116,376 - PfGW456L13_4583 0.51 -0.8 5,116,435 + PfGW456L13_4583 0.55 +0.4 5,116,435 + PfGW456L13_4583 0.55 -1.1 5,116,435 + PfGW456L13_4583 0.55 -1.7 5,116,435 + PfGW456L13_4583 0.55 +0.7 5,116,435 + PfGW456L13_4583 0.55 +0.7 5,116,435 + PfGW456L13_4583 0.55 -0.5 5,116,435 + PfGW456L13_4583 0.55 +0.9 5,116,435 + PfGW456L13_4583 0.55 -1.3 5,116,435 + PfGW456L13_4583 0.55 +1.3 5,116,435 + PfGW456L13_4583 0.55 +0.7 5,116,435 + PfGW456L13_4583 0.55 +1.3 5,116,435 + PfGW456L13_4583 0.55 +1.3 5,116,435 + PfGW456L13_4583 0.55 +0.4 5,116,435 + PfGW456L13_4583 0.55 +0.9 5,116,436 - PfGW456L13_4583 0.55 +0.9 5,116,436 - PfGW456L13_4583 0.55 +1.5 5,116,436 - PfGW456L13_4583 0.55 -1.0 5,116,436 - PfGW456L13_4583 0.55 +0.4 5,116,436 - PfGW456L13_4583 0.55 +0.9 5,116,436 - +0.5 5,116,436 - PfGW456L13_4583 0.55 +1.0 5,116,436 - PfGW456L13_4583 0.55 +0.6 5,116,436 - PfGW456L13_4583 0.55 +1.1 5,116,436 - PfGW456L13_4583 0.55 +0.1 5,116,436 - PfGW456L13_4583 0.55 -1.5 5,116,436 - PfGW456L13_4583 0.55 +0.2 5,116,436 - PfGW456L13_4583 0.55 -2.6 5,116,436 - PfGW456L13_4583 0.55 -2.4 5,116,436 - PfGW456L13_4583 0.55 -0.5 5,116,436 - PfGW456L13_4583 0.55 +2.1 5,116,436 - PfGW456L13_4583 0.55 +2.0 5,116,436 - PfGW456L13_4583 0.55 +1.5 5,116,436 - PfGW456L13_4583 0.55 -3.2 5,116,436 - PfGW456L13_4583 0.55 -0.1 5,116,436 - PfGW456L13_4583 0.55 -0.8 5,116,436 - PfGW456L13_4583 0.55 +0.4 5,116,513 + PfGW456L13_4583 0.61 +0.5 5,116,567 + PfGW456L13_4583 0.66 +2.5 5,116,567 + PfGW456L13_4583 0.66 -1.1 5,116,567 + PfGW456L13_4583 0.66 +1.0 5,116,567 + PfGW456L13_4583 0.66 +0.4 5,116,568 - PfGW456L13_4583 0.66 +0.6 5,116,568 - PfGW456L13_4583 0.66 -1.4 5,116,568 - PfGW456L13_4583 0.66 -0.2 5,116,568 - PfGW456L13_4583 0.66 -1.5 5,116,588 + PfGW456L13_4583 0.67 +0.5 5,116,588 + PfGW456L13_4583 0.67 -0.4 5,116,589 - PfGW456L13_4583 0.67 -1.0 5,116,589 - PfGW456L13_4583 0.67 -1.1 5,116,589 - PfGW456L13_4583 0.67 +1.3 5,116,606 + PfGW456L13_4583 0.69 -0.8 5,116,606 + PfGW456L13_4583 0.69 +0.2 5,116,606 + PfGW456L13_4583 0.69 +1.3 5,116,606 + PfGW456L13_4583 0.69 +1.2 5,116,606 + PfGW456L13_4583 0.69 +1.3 5,116,607 - PfGW456L13_4583 0.69 -0.5 5,116,607 - PfGW456L13_4583 0.69 +1.3 5,116,607 - PfGW456L13_4583 0.69 +0.0 5,116,690 + PfGW456L13_4583 0.75 +1.4 5,116,690 + PfGW456L13_4583 0.75 -0.3 5,116,691 - PfGW456L13_4583 0.76 -2.7 5,116,691 - PfGW456L13_4583 0.76 -1.1 5,116,691 - PfGW456L13_4583 0.76 -0.9 5,116,702 + PfGW456L13_4583 0.76 +1.6 5,116,702 + PfGW456L13_4583 0.76 +0.6 5,116,733 + PfGW456L13_4583 0.79 +1.9 5,116,733 + PfGW456L13_4583 0.79 -3.9 5,116,733 + PfGW456L13_4583 0.79 +0.5 5,116,734 - +1.3 5,116,744 + PfGW456L13_4583 0.80 +1.7 5,116,744 + PfGW456L13_4583 0.80 +1.6 5,116,744 + PfGW456L13_4583 0.80 +1.0 5,116,744 + PfGW456L13_4583 0.80 +1.4 5,116,745 - PfGW456L13_4583 0.80 -0.7 5,116,745 - PfGW456L13_4583 0.80 +0.5 5,116,792 + PfGW456L13_4583 0.84 +0.1 5,116,792 + PfGW456L13_4583 0.84 -2.2 5,116,792 + PfGW456L13_4583 0.84 +1.7 5,116,792 + PfGW456L13_4583 0.84 -1.4 5,116,792 + PfGW456L13_4583 0.84 -1.6 5,116,868 - PfGW456L13_4583 0.90 -3.1 5,116,936 + +0.4 5,116,936 + -1.0 5,116,944 + +0.0 5,116,979 - -1.3 5,116,996 + +1.4 5,116,997 - +0.5 5,116,997 - +0.8 5,117,042 + -0.9 5,117,042 + +0.7 5,117,058 + -2.9 5,117,058 + -0.4 5,117,122 - -0.7 5,117,202 + PfGW456L13_4584 0.21 +1.9 5,117,202 + PfGW456L13_4584 0.21 -1.0 5,117,202 + PfGW456L13_4584 0.21 +0.5 5,117,202 + PfGW456L13_4584 0.21 +1.3 5,117,202 + PfGW456L13_4584 0.21 -2.7 5,117,203 - PfGW456L13_4584 0.21 -2.0 5,117,203 - PfGW456L13_4584 0.21 -2.5 5,117,494 - -0.3 5,117,517 + -2.3 5,117,518 - +0.6 5,117,518 - -0.8 5,117,599 + -1.0 5,117,599 + +0.7 5,117,599 + -1.5 5,117,599 + -0.4 5,117,765 - PfGW456L13_4585 0.31 -1.9 5,117,799 - PfGW456L13_4585 0.35 -2.1
Or see this region's nucleotide sequence