Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4337

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4336 and PfGW456L13_4337 are separated by 3 nucleotidesPfGW456L13_4337 and PfGW456L13_4338 are separated by 3 nucleotidesPfGW456L13_4338 and PfGW456L13_4339 overlap by 4 nucleotides PfGW456L13_4336 - Flagellar biosynthesis protein FlhB, at 4,849,547 to 4,850,686 _4336 PfGW456L13_4337 - Flagellar biosynthesis protein FliR, at 4,850,690 to 4,851,472 _4337 PfGW456L13_4338 - Flagellar biosynthesis protein FliQ, at 4,851,476 to 4,851,745 _4338 PfGW456L13_4339 - Flagellar biosynthesis protein FliP, at 4,851,742 to 4,852,500 _4339 Position (kb) 4850 4851 4852Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4849.713 kb on + strand, within PfGW456L13_4336at 4849.713 kb on + strand, within PfGW456L13_4336at 4849.713 kb on + strand, within PfGW456L13_4336at 4849.714 kb on - strand, within PfGW456L13_4336at 4849.714 kb on - strand, within PfGW456L13_4336at 4849.716 kb on + strand, within PfGW456L13_4336at 4849.716 kb on + strand, within PfGW456L13_4336at 4849.716 kb on + strand, within PfGW456L13_4336at 4849.716 kb on + strand, within PfGW456L13_4336at 4849.717 kb on - strand, within PfGW456L13_4336at 4849.717 kb on - strand, within PfGW456L13_4336at 4849.717 kb on - strand, within PfGW456L13_4336at 4849.831 kb on + strand, within PfGW456L13_4336at 4849.848 kb on + strand, within PfGW456L13_4336at 4849.849 kb on - strand, within PfGW456L13_4336at 4849.849 kb on - strand, within PfGW456L13_4336at 4850.105 kb on - strand, within PfGW456L13_4336at 4850.105 kb on - strand, within PfGW456L13_4336at 4850.442 kb on + strand, within PfGW456L13_4336at 4850.442 kb on + strand, within PfGW456L13_4336at 4850.442 kb on + strand, within PfGW456L13_4336at 4850.443 kb on - strand, within PfGW456L13_4336at 4850.443 kb on - strand, within PfGW456L13_4336at 4850.749 kb on - strandat 4850.749 kb on - strandat 4850.831 kb on - strand, within PfGW456L13_4337at 4850.906 kb on + strand, within PfGW456L13_4337at 4851.478 kb on - strandat 4851.497 kb on - strandat 4851.504 kb on + strand, within PfGW456L13_4338at 4851.505 kb on - strand, within PfGW456L13_4338at 4851.505 kb on - strand, within PfGW456L13_4338at 4851.505 kb on - strand, within PfGW456L13_4338at 4851.519 kb on + strand, within PfGW456L13_4338at 4851.519 kb on + strand, within PfGW456L13_4338at 4851.519 kb on + strand, within PfGW456L13_4338at 4851.520 kb on - strand, within PfGW456L13_4338at 4851.520 kb on - strand, within PfGW456L13_4338at 4851.520 kb on - strand, within PfGW456L13_4338at 4851.520 kb on - strand, within PfGW456L13_4338at 4851.864 kb on + strand, within PfGW456L13_4339at 4851.864 kb on + strand, within PfGW456L13_4339at 4851.865 kb on - strand, within PfGW456L13_4339at 4851.865 kb on - strand, within PfGW456L13_4339at 4851.880 kb on + strand, within PfGW456L13_4339at 4851.880 kb on + strand, within PfGW456L13_4339at 4851.881 kb on - strand, within PfGW456L13_4339at 4851.881 kb on - strand, within PfGW456L13_4339at 4852.329 kb on + strand, within PfGW456L13_4339at 4852.330 kb on - strandat 4852.376 kb on + strand, within PfGW456L13_4339at 4852.377 kb on - strand, within PfGW456L13_4339at 4852.377 kb on - strand, within PfGW456L13_4339

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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4,849,713 + PfGW456L13_4336 0.15 +0.9
4,849,713 + PfGW456L13_4336 0.15 -3.4
4,849,713 + PfGW456L13_4336 0.15 +0.6
4,849,714 - PfGW456L13_4336 0.15 -2.0
4,849,714 - PfGW456L13_4336 0.15 +0.3
4,849,716 + PfGW456L13_4336 0.15 +0.1
4,849,716 + PfGW456L13_4336 0.15 +0.7
4,849,716 + PfGW456L13_4336 0.15 +1.0
4,849,716 + PfGW456L13_4336 0.15 +1.0
4,849,717 - PfGW456L13_4336 0.15 -0.9
4,849,717 - PfGW456L13_4336 0.15 +0.3
4,849,717 - PfGW456L13_4336 0.15 +1.5
4,849,831 + PfGW456L13_4336 0.25 -2.1
4,849,848 + PfGW456L13_4336 0.26 -2.8
4,849,849 - PfGW456L13_4336 0.26 +0.4
4,849,849 - PfGW456L13_4336 0.26 -0.3
4,850,105 - PfGW456L13_4336 0.49 -0.0
4,850,105 - PfGW456L13_4336 0.49 -3.4
4,850,442 + PfGW456L13_4336 0.79 +1.6
4,850,442 + PfGW456L13_4336 0.79 -0.1
4,850,442 + PfGW456L13_4336 0.79 +0.9
4,850,443 - PfGW456L13_4336 0.79 -0.1
4,850,443 - PfGW456L13_4336 0.79 +1.0
4,850,749 - +1.1
4,850,749 - -0.1
4,850,831 - PfGW456L13_4337 0.18 -4.2
4,850,906 + PfGW456L13_4337 0.28 -2.8
4,851,478 - +1.9
4,851,497 - -0.3
4,851,504 + PfGW456L13_4338 0.10 +1.1
4,851,505 - PfGW456L13_4338 0.11 -0.6
4,851,505 - PfGW456L13_4338 0.11 +0.4
4,851,505 - PfGW456L13_4338 0.11 +1.0
4,851,519 + PfGW456L13_4338 0.16 -1.2
4,851,519 + PfGW456L13_4338 0.16 -1.5
4,851,519 + PfGW456L13_4338 0.16 -2.8
4,851,520 - PfGW456L13_4338 0.16 +0.8
4,851,520 - PfGW456L13_4338 0.16 +1.7
4,851,520 - PfGW456L13_4338 0.16 -1.4
4,851,520 - PfGW456L13_4338 0.16 +2.3
4,851,864 + PfGW456L13_4339 0.16 -0.2
4,851,864 + PfGW456L13_4339 0.16 -0.2
4,851,865 - PfGW456L13_4339 0.16 +0.2
4,851,865 - PfGW456L13_4339 0.16 -1.1
4,851,880 + PfGW456L13_4339 0.18 +0.2
4,851,880 + PfGW456L13_4339 0.18 -0.3
4,851,881 - PfGW456L13_4339 0.18 -1.9
4,851,881 - PfGW456L13_4339 0.18 -1.4
4,852,329 + PfGW456L13_4339 0.77 +0.9
4,852,330 - -0.9
4,852,376 + PfGW456L13_4339 0.84 +0.1
4,852,377 - PfGW456L13_4339 0.84 +1.1
4,852,377 - PfGW456L13_4339 0.84 -0.5

Or see this region's nucleotide sequence