Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3899

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3896 and PfGW456L13_3897 are separated by 109 nucleotidesPfGW456L13_3897 and PfGW456L13_3898 are separated by 28 nucleotidesPfGW456L13_3898 and PfGW456L13_3899 are separated by 60 nucleotidesPfGW456L13_3899 and PfGW456L13_3900 are separated by 119 nucleotides PfGW456L13_3896 - Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20), at 4,373,137 to 4,374,153 _3896 PfGW456L13_3897 - LSU ribosomal protein L20p, at 4,374,263 to 4,374,619 _3897 PfGW456L13_3898 - LSU ribosomal protein L35p, at 4,374,648 to 4,374,842 _3898 PfGW456L13_3899 - Translation initiation factor 3, at 4,374,903 to 4,375,334 _3899 PfGW456L13_3900 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 4,375,454 to 4,377,376 _3900 Position (kb) 4374 4375 4376Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4374.169 kb on - strandat 4374.204 kb on - strandat 4374.208 kb on - strandat 4374.208 kb on - strandat 4374.875 kb on - strandat 4374.905 kb on - strandat 4374.905 kb on - strandat 4374.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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4,374,169 - +0.9
4,374,204 - +1.1
4,374,208 - +0.1
4,374,208 - +2.3
4,374,875 - -3.2
4,374,905 - +0.3
4,374,905 - -0.6
4,374,905 - -0.3

Or see this region's nucleotide sequence