Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04570 and PS417_04575 overlap by 4 nucleotides PS417_04575 and PS417_04580 are separated by 92 nucleotides PS417_04580 and PS417_04585 overlap by 1 nucleotides
PS417_04570: PS417_04570 - phospholipid-binding protein, at 1,012,471 to 1,013,052
_04570
PS417_04575: PS417_04575 - DnaA initiator-associating protein DiaA, at 1,013,049 to 1,013,642
_04575
PS417_04580: PS417_04580 - hypothetical protein, at 1,013,735 to 1,014,106
_04580
PS417_04585: PS417_04585 - hypothetical protein, at 1,014,106 to 1,015,917
_04585
Position (kb)
1013
1014
1015 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1013.655 kb on - strand at 1013.655 kb on - strand at 1013.655 kb on - strand at 1013.955 kb on - strand, within PS417_04580 at 1013.955 kb on - strand, within PS417_04580 at 1013.955 kb on - strand, within PS417_04580 at 1013.957 kb on + strand, within PS417_04580 at 1013.963 kb on - strand, within PS417_04580 at 1014.001 kb on + strand, within PS417_04580 at 1014.002 kb on - strand, within PS417_04580 at 1014.005 kb on + strand, within PS417_04580 at 1014.890 kb on + strand, within PS417_04585 at 1014.891 kb on - strand, within PS417_04585
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,013,655 - +0.9 1,013,655 - -0.0 1,013,655 - -1.2 1,013,955 - PS417_04580 0.59 +0.1 1,013,955 - PS417_04580 0.59 +0.3 1,013,955 - PS417_04580 0.59 -0.1 1,013,957 + PS417_04580 0.60 +2.8 1,013,963 - PS417_04580 0.61 +0.0 1,014,001 + PS417_04580 0.72 +1.1 1,014,002 - PS417_04580 0.72 +0.3 1,014,005 + PS417_04580 0.73 +0.9 1,014,890 + PS417_04585 0.43 -0.4 1,014,891 - PS417_04585 0.43 -0.3
Or see this region's nucleotide sequence