Experiment: m.b. Fusidic 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3511 and Echvi_3512 are separated by 97 nucleotides Echvi_3512 and Echvi_3513 are separated by 33 nucleotides Echvi_3513 and Echvi_3514 are separated by 216 nucleotides
Echvi_3511: Echvi_3511 - hypothetical protein, at 4,161,551 to 4,162,408
_3511
Echvi_3512: Echvi_3512 - DNA binding domain, excisionase family, at 4,162,506 to 4,162,784
_3512
Echvi_3513: Echvi_3513 - Predicted P-loop ATPase and inactivated derivatives, at 4,162,818 to 4,164,032
_3513
Echvi_3514: Echvi_3514 - DNA primase (bacterial type), at 4,164,249 to 4,165,112
_3514
Position (kb) 4162
4163
4164
4165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4161.887 kb on - strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.919 kb on + strand, within Echvi_3511 at 4162.009 kb on + strand, within Echvi_3511 at 4162.094 kb on + strand, within Echvi_3511 at 4162.181 kb on - strand, within Echvi_3511 at 4162.181 kb on - strand, within Echvi_3511 at 4162.212 kb on - strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.243 kb on + strand, within Echvi_3511 at 4162.244 kb on - strand, within Echvi_3511 at 4162.313 kb on + strand, within Echvi_3511 at 4162.333 kb on + strand at 4162.333 kb on + strand at 4162.334 kb on - strand at 4162.334 kb on - strand at 4162.340 kb on + strand at 4162.358 kb on + strand at 4162.359 kb on - strand at 4162.359 kb on - strand at 4162.361 kb on - strand at 4162.401 kb on + strand at 4162.401 kb on + strand at 4162.401 kb on + strand at 4162.402 kb on - strand at 4162.402 kb on - strand at 4162.402 kb on - strand at 4162.467 kb on + strand at 4162.520 kb on + strand at 4162.553 kb on + strand, within Echvi_3512 at 4162.582 kb on + strand, within Echvi_3512 at 4162.600 kb on - strand, within Echvi_3512 at 4162.730 kb on + strand, within Echvi_3512 at 4162.873 kb on + strand at 4162.874 kb on - strand at 4162.874 kb on - strand at 4162.877 kb on + strand at 4162.878 kb on - strand at 4162.878 kb on - strand at 4162.878 kb on - strand at 4162.917 kb on - strand at 4162.917 kb on - strand at 4162.986 kb on - strand, within Echvi_3513 at 4162.992 kb on + strand, within Echvi_3513 at 4162.992 kb on + strand, within Echvi_3513 at 4162.992 kb on + strand, within Echvi_3513 at 4162.993 kb on - strand, within Echvi_3513 at 4162.993 kb on - strand, within Echvi_3513 at 4162.996 kb on + strand, within Echvi_3513 at 4162.996 kb on + strand, within Echvi_3513 at 4162.996 kb on + strand, within Echvi_3513 at 4162.996 kb on + strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4162.997 kb on - strand, within Echvi_3513 at 4163.038 kb on + strand, within Echvi_3513 at 4163.039 kb on - strand, within Echvi_3513 at 4163.061 kb on + strand, within Echvi_3513 at 4163.061 kb on + strand, within Echvi_3513 at 4163.062 kb on - strand, within Echvi_3513 at 4163.062 kb on - strand, within Echvi_3513 at 4163.064 kb on - strand, within Echvi_3513 at 4163.091 kb on + strand, within Echvi_3513 at 4163.092 kb on - strand, within Echvi_3513 at 4163.092 kb on - strand, within Echvi_3513 at 4163.113 kb on + strand, within Echvi_3513 at 4163.139 kb on + strand, within Echvi_3513 at 4163.139 kb on + strand, within Echvi_3513 at 4163.139 kb on + strand, within Echvi_3513 at 4163.140 kb on - strand, within Echvi_3513 at 4163.141 kb on + strand, within Echvi_3513 at 4163.141 kb on + strand, within Echvi_3513 at 4163.142 kb on - strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.160 kb on + strand, within Echvi_3513 at 4163.161 kb on - strand, within Echvi_3513 at 4163.161 kb on - strand, within Echvi_3513 at 4163.161 kb on - strand, within Echvi_3513 at 4163.161 kb on - strand, within Echvi_3513 at 4163.163 kb on - strand, within Echvi_3513 at 4163.190 kb on - strand, within Echvi_3513 at 4163.195 kb on - strand, within Echvi_3513 at 4163.195 kb on - strand, within Echvi_3513 at 4163.195 kb on - strand, within Echvi_3513 at 4163.234 kb on + strand, within Echvi_3513 at 4163.234 kb on + strand, within Echvi_3513 at 4163.234 kb on + strand, within Echvi_3513 at 4163.235 kb on - strand, within Echvi_3513 at 4163.236 kb on + strand, within Echvi_3513 at 4163.237 kb on - strand, within Echvi_3513 at 4163.237 kb on - strand, within Echvi_3513 at 4163.247 kb on + strand, within Echvi_3513 at 4163.248 kb on - strand, within Echvi_3513 at 4163.250 kb on + strand, within Echvi_3513 at 4163.251 kb on - strand, within Echvi_3513 at 4163.251 kb on - strand, within Echvi_3513 at 4163.343 kb on + strand, within Echvi_3513 at 4163.343 kb on + strand, within Echvi_3513 at 4163.344 kb on - strand, within Echvi_3513 at 4163.346 kb on + strand, within Echvi_3513 at 4163.346 kb on + strand, within Echvi_3513 at 4163.346 kb on + strand, within Echvi_3513 at 4163.347 kb on - strand, within Echvi_3513 at 4163.358 kb on - strand, within Echvi_3513 at 4163.500 kb on - strand, within Echvi_3513 at 4163.549 kb on + strand, within Echvi_3513 at 4163.633 kb on + strand, within Echvi_3513 at 4163.634 kb on - strand, within Echvi_3513 at 4163.654 kb on + strand, within Echvi_3513 at 4163.655 kb on - strand, within Echvi_3513 at 4163.674 kb on - strand, within Echvi_3513 at 4163.762 kb on + strand, within Echvi_3513 at 4163.790 kb on + strand, within Echvi_3513 at 4163.795 kb on + strand, within Echvi_3513 at 4163.842 kb on + strand, within Echvi_3513 at 4163.842 kb on + strand, within Echvi_3513 at 4163.843 kb on - strand, within Echvi_3513 at 4163.888 kb on - strand, within Echvi_3513 at 4163.979 kb on + strand at 4163.979 kb on + strand at 4163.979 kb on + strand at 4163.979 kb on + strand at 4163.980 kb on - strand at 4163.980 kb on - strand at 4163.980 kb on - strand at 4163.980 kb on - strand at 4163.980 kb on - strand at 4164.012 kb on + strand at 4164.012 kb on + strand at 4164.021 kb on + strand at 4164.036 kb on + strand at 4164.036 kb on + strand at 4164.047 kb on - strand at 4164.052 kb on + strand at 4164.056 kb on - strand at 4164.080 kb on - strand at 4164.089 kb on + strand at 4164.113 kb on + strand at 4164.114 kb on - strand at 4164.137 kb on + strand at 4164.137 kb on + strand at 4164.137 kb on + strand at 4164.137 kb on + strand at 4164.137 kb on + strand at 4164.191 kb on + strand at 4164.192 kb on - strand at 4164.194 kb on + strand at 4164.194 kb on + strand at 4164.195 kb on - strand at 4164.195 kb on - strand at 4164.195 kb on - strand at 4164.195 kb on - strand at 4164.198 kb on + strand at 4164.198 kb on + strand at 4164.199 kb on - strand at 4164.199 kb on - strand at 4164.199 kb on - strand at 4164.199 kb on - strand at 4164.211 kb on - strand at 4164.236 kb on + strand at 4164.237 kb on - strand at 4164.246 kb on - strand at 4164.246 kb on - strand at 4164.336 kb on + strand, within Echvi_3514 at 4164.336 kb on + strand, within Echvi_3514 at 4164.337 kb on - strand, within Echvi_3514 at 4164.337 kb on - strand, within Echvi_3514 at 4164.368 kb on + strand, within Echvi_3514 at 4164.369 kb on - strand, within Echvi_3514 at 4164.381 kb on - strand, within Echvi_3514 at 4164.403 kb on + strand, within Echvi_3514 at 4164.404 kb on - strand, within Echvi_3514 at 4164.404 kb on - strand, within Echvi_3514 at 4164.404 kb on - strand, within Echvi_3514 at 4164.499 kb on - strand, within Echvi_3514 at 4164.499 kb on - strand, within Echvi_3514 at 4164.510 kb on - strand, within Echvi_3514 at 4164.510 kb on - strand, within Echvi_3514 at 4164.510 kb on - strand, within Echvi_3514 at 4164.574 kb on + strand, within Echvi_3514 at 4164.681 kb on + strand, within Echvi_3514 at 4164.682 kb on - strand, within Echvi_3514 at 4164.684 kb on + strand, within Echvi_3514 at 4164.691 kb on + strand, within Echvi_3514 at 4164.705 kb on + strand, within Echvi_3514 at 4164.757 kb on - strand, within Echvi_3514 at 4164.785 kb on + strand, within Echvi_3514 at 4164.785 kb on + strand, within Echvi_3514 at 4164.786 kb on - strand, within Echvi_3514 at 4164.786 kb on - strand, within Echvi_3514 at 4164.786 kb on - strand, within Echvi_3514 at 4164.789 kb on + strand, within Echvi_3514 at 4164.789 kb on + strand, within Echvi_3514 at 4164.789 kb on + strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.790 kb on - strand, within Echvi_3514 at 4164.935 kb on + strand, within Echvi_3514 at 4164.935 kb on + strand, within Echvi_3514 at 4164.980 kb on - strand, within Echvi_3514 at 4164.980 kb on - strand, within Echvi_3514
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml remove 4,161,887 - Echvi_3511 0.39 +0.7 4,161,887 - Echvi_3511 0.39 -0.0 4,161,887 - Echvi_3511 0.39 -0.4 4,161,888 + Echvi_3511 0.39 +0.2 4,161,888 + Echvi_3511 0.39 -0.1 4,161,888 + Echvi_3511 0.39 -0.7 4,161,888 + Echvi_3511 0.39 -0.2 4,161,889 - Echvi_3511 0.39 -0.7 4,161,889 - Echvi_3511 0.39 +0.1 4,161,889 - Echvi_3511 0.39 +0.2 4,161,889 - Echvi_3511 0.39 -0.2 4,161,889 - Echvi_3511 0.39 +0.3 4,161,919 + Echvi_3511 0.43 +1.5 4,162,009 + Echvi_3511 0.53 -0.6 4,162,094 + Echvi_3511 0.63 -0.2 4,162,181 - Echvi_3511 0.73 +1.2 4,162,181 - Echvi_3511 0.73 +0.4 4,162,212 - Echvi_3511 0.77 -0.2 4,162,235 + Echvi_3511 0.80 -1.0 4,162,235 + Echvi_3511 0.80 -0.5 4,162,235 + Echvi_3511 0.80 +0.6 4,162,236 - Echvi_3511 0.80 +0.2 4,162,236 - Echvi_3511 0.80 +0.2 4,162,236 - Echvi_3511 0.80 +0.3 4,162,236 - Echvi_3511 0.80 +0.2 4,162,236 - Echvi_3511 0.80 +0.2 4,162,236 - Echvi_3511 0.80 -2.7 4,162,243 + Echvi_3511 0.81 +0.1 4,162,244 - Echvi_3511 0.81 +1.7 4,162,313 + Echvi_3511 0.89 +0.3 4,162,333 + +0.5 4,162,333 + +0.1 4,162,334 - +0.3 4,162,334 - -0.2 4,162,340 + +1.5 4,162,358 + -0.3 4,162,359 - +0.2 4,162,359 - -0.4 4,162,361 - +0.5 4,162,401 + +0.7 4,162,401 + +0.3 4,162,401 + -1.0 4,162,402 - -0.1 4,162,402 - -0.1 4,162,402 - +0.8 4,162,467 + -0.2 4,162,520 + -3.3 4,162,553 + Echvi_3512 0.17 +0.4 4,162,582 + Echvi_3512 0.27 +0.5 4,162,600 - Echvi_3512 0.34 -1.1 4,162,730 + Echvi_3512 0.80 -0.8 4,162,873 + +0.9 4,162,874 - +0.3 4,162,874 - +1.0 4,162,877 + -0.4 4,162,878 - +0.5 4,162,878 - -0.0 4,162,878 - +0.4 4,162,917 - -0.6 4,162,917 - +1.2 4,162,986 - Echvi_3513 0.14 +0.6 4,162,992 + Echvi_3513 0.14 -0.5 4,162,992 + Echvi_3513 0.14 +0.9 4,162,992 + Echvi_3513 0.14 -2.3 4,162,993 - Echvi_3513 0.14 +2.2 4,162,993 - Echvi_3513 0.14 +1.9 4,162,996 + Echvi_3513 0.15 +0.9 4,162,996 + Echvi_3513 0.15 +0.3 4,162,996 + Echvi_3513 0.15 +0.1 4,162,996 + Echvi_3513 0.15 -0.7 4,162,997 - Echvi_3513 0.15 -0.7 4,162,997 - Echvi_3513 0.15 -0.1 4,162,997 - Echvi_3513 0.15 +0.4 4,162,997 - Echvi_3513 0.15 +0.5 4,162,997 - Echvi_3513 0.15 -0.9 4,162,997 - Echvi_3513 0.15 -0.0 4,163,038 + Echvi_3513 0.18 +0.9 4,163,039 - Echvi_3513 0.18 +0.2 4,163,061 + Echvi_3513 0.20 +0.3 4,163,061 + Echvi_3513 0.20 -0.3 4,163,062 - Echvi_3513 0.20 +0.4 4,163,062 - Echvi_3513 0.20 -0.0 4,163,064 - Echvi_3513 0.20 -0.2 4,163,091 + Echvi_3513 0.22 +1.2 4,163,092 - Echvi_3513 0.23 +1.8 4,163,092 - Echvi_3513 0.23 +0.6 4,163,113 + Echvi_3513 0.24 +0.2 4,163,139 + Echvi_3513 0.26 -1.7 4,163,139 + Echvi_3513 0.26 -0.2 4,163,139 + Echvi_3513 0.26 +1.7 4,163,140 - Echvi_3513 0.27 +0.7 4,163,141 + Echvi_3513 0.27 -0.3 4,163,141 + Echvi_3513 0.27 +0.6 4,163,142 - Echvi_3513 0.27 -1.5 4,163,160 + Echvi_3513 0.28 -0.6 4,163,160 + Echvi_3513 0.28 -0.9 4,163,160 + Echvi_3513 0.28 -0.3 4,163,160 + Echvi_3513 0.28 +1.5 4,163,160 + Echvi_3513 0.28 +0.8 4,163,160 + Echvi_3513 0.28 +0.3 4,163,161 - Echvi_3513 0.28 +0.3 4,163,161 - Echvi_3513 0.28 +2.1 4,163,161 - Echvi_3513 0.28 -0.1 4,163,161 - Echvi_3513 0.28 +1.3 4,163,163 - Echvi_3513 0.28 -0.1 4,163,190 - Echvi_3513 0.31 -0.2 4,163,195 - Echvi_3513 0.31 -0.1 4,163,195 - Echvi_3513 0.31 -0.8 4,163,195 - Echvi_3513 0.31 +1.0 4,163,234 + Echvi_3513 0.34 +0.1 4,163,234 + Echvi_3513 0.34 +0.5 4,163,234 + Echvi_3513 0.34 -0.0 4,163,235 - Echvi_3513 0.34 +0.7 4,163,236 + Echvi_3513 0.34 +0.8 4,163,237 - Echvi_3513 0.34 +0.6 4,163,237 - Echvi_3513 0.34 -0.0 4,163,247 + Echvi_3513 0.35 -0.4 4,163,248 - Echvi_3513 0.35 -0.3 4,163,250 + Echvi_3513 0.36 +0.3 4,163,251 - Echvi_3513 0.36 -0.1 4,163,251 - Echvi_3513 0.36 -0.2 4,163,343 + Echvi_3513 0.43 -0.1 4,163,343 + Echvi_3513 0.43 -0.2 4,163,344 - Echvi_3513 0.43 +0.1 4,163,346 + Echvi_3513 0.43 -0.9 4,163,346 + Echvi_3513 0.43 +0.5 4,163,346 + Echvi_3513 0.43 +0.4 4,163,347 - Echvi_3513 0.44 -0.7 4,163,358 - Echvi_3513 0.44 -1.5 4,163,500 - Echvi_3513 0.56 +1.2 4,163,549 + Echvi_3513 0.60 -0.4 4,163,633 + Echvi_3513 0.67 +0.3 4,163,634 - Echvi_3513 0.67 -0.8 4,163,654 + Echvi_3513 0.69 +1.2 4,163,655 - Echvi_3513 0.69 +0.9 4,163,674 - Echvi_3513 0.70 +0.1 4,163,762 + Echvi_3513 0.78 -0.1 4,163,790 + Echvi_3513 0.80 -1.2 4,163,795 + Echvi_3513 0.80 +0.5 4,163,842 + Echvi_3513 0.84 -0.8 4,163,842 + Echvi_3513 0.84 -0.5 4,163,843 - Echvi_3513 0.84 -0.1 4,163,888 - Echvi_3513 0.88 +1.0 4,163,979 + +0.0 4,163,979 + -0.8 4,163,979 + -0.5 4,163,979 + -0.1 4,163,980 - +0.6 4,163,980 - -1.9 4,163,980 - -0.4 4,163,980 - -1.6 4,163,980 - -0.3 4,164,012 + -1.2 4,164,012 + -0.2 4,164,021 + +0.2 4,164,036 + -0.4 4,164,036 + +1.9 4,164,047 - +1.2 4,164,052 + -0.3 4,164,056 - -1.1 4,164,080 - -0.4 4,164,089 + +0.9 4,164,113 + -1.4 4,164,114 - +0.5 4,164,137 + +0.3 4,164,137 + +1.0 4,164,137 + +2.2 4,164,137 + -1.0 4,164,137 + -0.0 4,164,191 + +0.9 4,164,192 - +0.4 4,164,194 + -0.3 4,164,194 + +0.0 4,164,195 - +0.2 4,164,195 - +0.4 4,164,195 - -0.9 4,164,195 - +3.1 4,164,198 + -2.4 4,164,198 + +0.4 4,164,199 - +0.6 4,164,199 - +0.3 4,164,199 - -1.3 4,164,199 - +0.3 4,164,211 - +0.4 4,164,236 + -0.2 4,164,237 - -0.5 4,164,246 - -0.9 4,164,246 - -0.2 4,164,336 + Echvi_3514 0.10 +0.7 4,164,336 + Echvi_3514 0.10 +1.7 4,164,337 - Echvi_3514 0.10 -1.2 4,164,337 - Echvi_3514 0.10 -0.1 4,164,368 + Echvi_3514 0.14 -0.9 4,164,369 - Echvi_3514 0.14 -0.8 4,164,381 - Echvi_3514 0.15 +0.5 4,164,403 + Echvi_3514 0.18 -2.8 4,164,404 - Echvi_3514 0.18 -0.3 4,164,404 - Echvi_3514 0.18 +0.7 4,164,404 - Echvi_3514 0.18 +0.1 4,164,499 - Echvi_3514 0.29 +0.5 4,164,499 - Echvi_3514 0.29 -0.9 4,164,510 - Echvi_3514 0.30 +0.0 4,164,510 - Echvi_3514 0.30 +3.5 4,164,510 - Echvi_3514 0.30 +0.2 4,164,574 + Echvi_3514 0.38 -0.1 4,164,681 + Echvi_3514 0.50 -1.4 4,164,682 - Echvi_3514 0.50 -0.1 4,164,684 + Echvi_3514 0.50 -2.4 4,164,691 + Echvi_3514 0.51 -0.1 4,164,705 + Echvi_3514 0.53 +1.1 4,164,757 - Echvi_3514 0.59 +3.1 4,164,785 + Echvi_3514 0.62 +0.1 4,164,785 + Echvi_3514 0.62 -0.6 4,164,786 - Echvi_3514 0.62 -0.4 4,164,786 - Echvi_3514 0.62 +0.5 4,164,786 - Echvi_3514 0.62 +0.1 4,164,789 + Echvi_3514 0.62 +0.8 4,164,789 + Echvi_3514 0.62 -0.3 4,164,789 + Echvi_3514 0.62 -0.7 4,164,790 - Echvi_3514 0.63 +0.1 4,164,790 - Echvi_3514 0.63 +0.2 4,164,790 - Echvi_3514 0.63 +1.5 4,164,790 - Echvi_3514 0.63 -0.6 4,164,790 - Echvi_3514 0.63 -0.7 4,164,935 + Echvi_3514 0.79 -0.3 4,164,935 + Echvi_3514 0.79 +0.5 4,164,980 - Echvi_3514 0.85 +0.3 4,164,980 - Echvi_3514 0.85 -1.9
Or see this region's nucleotide sequence