Experiment: m.b. Fusidic 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0509 and Echvi_0510 are separated by 151 nucleotides Echvi_0510 and Echvi_0511 are separated by 199 nucleotides
Echvi_0509: Echvi_0509 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 569,075 to 570,109
_0509
Echvi_0510: Echvi_0510 - Transcriptional regulators, at 570,261 to 571,283
_0510
Echvi_0511: Echvi_0511 - Superfamily II DNA and RNA helicases, at 571,483 to 572,733
_0511
Position (kb) 570
571
572 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.353 kb on - strand, within Echvi_0509 at 569.353 kb on - strand, within Echvi_0509 at 569.353 kb on - strand, within Echvi_0509 at 569.353 kb on - strand, within Echvi_0509 at 569.404 kb on + strand, within Echvi_0509 at 569.404 kb on + strand, within Echvi_0509 at 569.405 kb on - strand, within Echvi_0509 at 569.405 kb on - strand, within Echvi_0509 at 569.434 kb on + strand, within Echvi_0509 at 569.434 kb on + strand, within Echvi_0509 at 569.601 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.664 kb on + strand, within Echvi_0509 at 569.665 kb on - strand, within Echvi_0509 at 569.665 kb on - strand, within Echvi_0509 at 569.703 kb on + strand, within Echvi_0509 at 569.755 kb on - strand, within Echvi_0509 at 569.938 kb on - strand, within Echvi_0509 at 569.977 kb on - strand, within Echvi_0509 at 570.009 kb on - strand at 570.114 kb on - strand at 570.114 kb on - strand at 570.154 kb on + strand at 570.405 kb on + strand, within Echvi_0510 at 570.406 kb on - strand, within Echvi_0510 at 570.408 kb on - strand, within Echvi_0510 at 570.487 kb on - strand, within Echvi_0510 at 570.514 kb on + strand, within Echvi_0510 at 570.543 kb on + strand, within Echvi_0510 at 570.543 kb on + strand, within Echvi_0510 at 570.543 kb on + strand, within Echvi_0510 at 570.553 kb on + strand, within Echvi_0510 at 570.553 kb on + strand, within Echvi_0510 at 570.553 kb on + strand, within Echvi_0510 at 570.554 kb on - strand, within Echvi_0510 at 570.613 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.694 kb on + strand, within Echvi_0510 at 570.695 kb on - strand, within Echvi_0510 at 570.695 kb on - strand, within Echvi_0510 at 570.695 kb on - strand, within Echvi_0510 at 570.779 kb on + strand, within Echvi_0510 at 570.780 kb on - strand, within Echvi_0510 at 570.892 kb on + strand, within Echvi_0510 at 571.198 kb on + strand at 571.199 kb on - strand at 571.286 kb on + strand at 571.286 kb on + strand at 571.287 kb on - strand at 571.312 kb on - strand at 571.362 kb on + strand at 571.368 kb on + strand at 571.368 kb on + strand at 571.400 kb on + strand at 571.401 kb on - strand at 571.401 kb on - strand at 571.401 kb on - strand at 571.401 kb on - strand at 571.432 kb on - strand at 571.492 kb on - strand at 571.520 kb on + strand at 571.520 kb on + strand at 571.521 kb on - strand at 571.530 kb on - strand at 571.575 kb on + strand at 571.575 kb on + strand at 571.576 kb on - strand at 571.668 kb on + strand, within Echvi_0511 at 571.668 kb on + strand, within Echvi_0511 at 571.668 kb on + strand, within Echvi_0511 at 571.849 kb on - strand, within Echvi_0511 at 571.859 kb on + strand, within Echvi_0511 at 572.004 kb on + strand, within Echvi_0511 at 572.005 kb on - strand, within Echvi_0511 at 572.150 kb on - strand, within Echvi_0511 at 572.155 kb on + strand, within Echvi_0511 at 572.156 kb on - strand, within Echvi_0511 at 572.156 kb on - strand, within Echvi_0511 at 572.158 kb on + strand, within Echvi_0511 at 572.166 kb on + strand, within Echvi_0511 at 572.167 kb on - strand, within Echvi_0511 at 572.167 kb on - strand, within Echvi_0511 at 572.197 kb on - strand, within Echvi_0511
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml remove 569,353 - Echvi_0509 0.27 +1.5 569,353 - Echvi_0509 0.27 -0.1 569,353 - Echvi_0509 0.27 -0.4 569,353 - Echvi_0509 0.27 -0.4 569,404 + Echvi_0509 0.32 -0.5 569,404 + Echvi_0509 0.32 -2.4 569,405 - Echvi_0509 0.32 +0.3 569,405 - Echvi_0509 0.32 -0.3 569,434 + Echvi_0509 0.35 +0.0 569,434 + Echvi_0509 0.35 -0.1 569,601 + Echvi_0509 0.51 +1.0 569,664 + Echvi_0509 0.57 +0.0 569,664 + Echvi_0509 0.57 -1.1 569,664 + Echvi_0509 0.57 +1.2 569,664 + Echvi_0509 0.57 -0.2 569,665 - Echvi_0509 0.57 -0.5 569,665 - Echvi_0509 0.57 -0.4 569,703 + Echvi_0509 0.61 -0.3 569,755 - Echvi_0509 0.66 -1.0 569,938 - Echvi_0509 0.83 -0.6 569,977 - Echvi_0509 0.87 -0.4 570,009 - -1.3 570,114 - +0.3 570,114 - -1.5 570,154 + -0.6 570,405 + Echvi_0510 0.14 +0.7 570,406 - Echvi_0510 0.14 +0.4 570,408 - Echvi_0510 0.14 -1.9 570,487 - Echvi_0510 0.22 -1.3 570,514 + Echvi_0510 0.25 +1.7 570,543 + Echvi_0510 0.28 -1.5 570,543 + Echvi_0510 0.28 +1.9 570,543 + Echvi_0510 0.28 +0.6 570,553 + Echvi_0510 0.29 +0.1 570,553 + Echvi_0510 0.29 +0.5 570,553 + Echvi_0510 0.29 +0.7 570,554 - Echvi_0510 0.29 +0.7 570,613 + Echvi_0510 0.34 +0.0 570,694 + Echvi_0510 0.42 +0.2 570,694 + Echvi_0510 0.42 +1.2 570,694 + Echvi_0510 0.42 +0.6 570,694 + Echvi_0510 0.42 +0.4 570,694 + Echvi_0510 0.42 +0.7 570,695 - Echvi_0510 0.42 -0.2 570,695 - Echvi_0510 0.42 +0.0 570,695 - Echvi_0510 0.42 -0.9 570,779 + Echvi_0510 0.51 -1.3 570,780 - Echvi_0510 0.51 +0.3 570,892 + Echvi_0510 0.62 -0.0 571,198 + -0.1 571,199 - -1.0 571,286 + +1.0 571,286 + +0.2 571,287 - +0.9 571,312 - +0.4 571,362 + -0.3 571,368 + -0.1 571,368 + -0.1 571,400 + -0.9 571,401 - -0.4 571,401 - +0.1 571,401 - -0.3 571,401 - +0.6 571,432 - -0.3 571,492 - +0.2 571,520 + -1.2 571,520 + +0.3 571,521 - -0.7 571,530 - -0.3 571,575 + -1.4 571,575 + -0.8 571,576 - -1.6 571,668 + Echvi_0511 0.15 -0.5 571,668 + Echvi_0511 0.15 +0.1 571,668 + Echvi_0511 0.15 +0.2 571,849 - Echvi_0511 0.29 -0.8 571,859 + Echvi_0511 0.30 +0.7 572,004 + Echvi_0511 0.42 -0.3 572,005 - Echvi_0511 0.42 +1.4 572,150 - Echvi_0511 0.53 -0.1 572,155 + Echvi_0511 0.54 -1.4 572,156 - Echvi_0511 0.54 +0.6 572,156 - Echvi_0511 0.54 -0.3 572,158 + Echvi_0511 0.54 +0.2 572,166 + Echvi_0511 0.55 -0.1 572,167 - Echvi_0511 0.55 +1.1 572,167 - Echvi_0511 0.55 +0.7 572,197 - Echvi_0511 0.57 +0.9
Or see this region's nucleotide sequence