Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0212

Experiment: m.b. Fusidic 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0210 and Echvi_0211 are separated by 148 nucleotidesEchvi_0211 and Echvi_0212 are separated by 1 nucleotidesEchvi_0212 and Echvi_0213 are separated by 552 nucleotides Echvi_0210: Echvi_0210 - Secreted and surface protein containing fasciclin-like repeats, at 229,698 to 230,642 _0210 Echvi_0211: Echvi_0211 - hypothetical protein, at 230,791 to 231,258 _0211 Echvi_0212: Echvi_0212 - Sulfite oxidase and related enzymes, at 231,260 to 232,507 _0212 Echvi_0213: Echvi_0213 - hypothetical protein, at 233,060 to 233,374 _0213 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 230.271 kb on - strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.274 kb on + strand, within Echvi_0210at 230.275 kb on - strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.326 kb on + strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.327 kb on - strand, within Echvi_0210at 230.349 kb on - strand, within Echvi_0210at 230.349 kb on - strand, within Echvi_0210at 230.361 kb on + strand, within Echvi_0210at 230.361 kb on + strand, within Echvi_0210at 230.362 kb on - strand, within Echvi_0210at 230.379 kb on - strand, within Echvi_0210at 230.385 kb on - strand, within Echvi_0210at 230.428 kb on - strand, within Echvi_0210at 230.659 kb on - strandat 230.691 kb on + strandat 230.861 kb on + strand, within Echvi_0211at 230.861 kb on + strand, within Echvi_0211at 230.862 kb on - strand, within Echvi_0211at 231.155 kb on + strand, within Echvi_0211at 231.155 kb on + strand, within Echvi_0211at 231.156 kb on - strand, within Echvi_0211at 231.181 kb on + strand, within Echvi_0211at 231.232 kb on + strandat 231.262 kb on - strandat 231.267 kb on - strandat 231.267 kb on - strandat 231.295 kb on + strandat 231.296 kb on - strandat 231.381 kb on + strandat 231.381 kb on + strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.385 kb on - strand, within Echvi_0212at 231.458 kb on - strand, within Echvi_0212at 231.458 kb on - strand, within Echvi_0212at 231.617 kb on + strand, within Echvi_0212at 231.618 kb on - strand, within Echvi_0212at 231.622 kb on + strand, within Echvi_0212at 231.623 kb on - strand, within Echvi_0212at 231.681 kb on + strand, within Echvi_0212at 232.019 kb on + strand, within Echvi_0212at 232.109 kb on - strand, within Echvi_0212at 232.220 kb on + strand, within Echvi_0212at 232.221 kb on - strand, within Echvi_0212at 232.247 kb on - strand, within Echvi_0212at 232.264 kb on + strand, within Echvi_0212at 232.292 kb on + strand, within Echvi_0212at 232.292 kb on + strand, within Echvi_0212at 232.292 kb on + strand, within Echvi_0212at 232.306 kb on + strand, within Echvi_0212at 232.330 kb on + strand, within Echvi_0212at 232.350 kb on + strand, within Echvi_0212at 232.351 kb on - strand, within Echvi_0212at 232.351 kb on - strand, within Echvi_0212at 232.370 kb on + strand, within Echvi_0212at 232.545 kb on - strandat 232.754 kb on - strandat 232.758 kb on - strandat 232.889 kb on - strandat 232.918 kb on + strandat 232.919 kb on - strandat 232.919 kb on - strandat 233.050 kb on + strandat 233.050 kb on + strandat 233.050 kb on + strandat 233.050 kb on + strandat 233.076 kb on + strandat 233.079 kb on + strandat 233.080 kb on - strandat 233.102 kb on + strand, within Echvi_0213at 233.103 kb on - strand, within Echvi_0213at 233.103 kb on - strand, within Echvi_0213at 233.106 kb on + strand, within Echvi_0213at 233.106 kb on + strand, within Echvi_0213at 233.119 kb on + strand, within Echvi_0213at 233.136 kb on + strand, within Echvi_0213at 233.136 kb on + strand, within Echvi_0213at 233.136 kb on + strand, within Echvi_0213at 233.137 kb on - strand, within Echvi_0213at 233.155 kb on - strand, within Echvi_0213at 233.178 kb on + strand, within Echvi_0213at 233.263 kb on + strand, within Echvi_0213at 233.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.003 mg/ml
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230,271 - Echvi_0210 0.61 -0.1
230,274 + Echvi_0210 0.61 +0.2
230,274 + Echvi_0210 0.61 -0.2
230,274 + Echvi_0210 0.61 -1.8
230,274 + Echvi_0210 0.61 -1.7
230,275 - Echvi_0210 0.61 +0.1
230,326 + Echvi_0210 0.66 -0.7
230,326 + Echvi_0210 0.66 -0.1
230,326 + Echvi_0210 0.66 -0.4
230,326 + Echvi_0210 0.66 -0.7
230,326 + Echvi_0210 0.66 -0.5
230,327 - Echvi_0210 0.67 +1.0
230,327 - Echvi_0210 0.67 -0.4
230,327 - Echvi_0210 0.67 +0.1
230,327 - Echvi_0210 0.67 -0.6
230,349 - Echvi_0210 0.69 +0.5
230,349 - Echvi_0210 0.69 -0.6
230,361 + Echvi_0210 0.70 +1.3
230,361 + Echvi_0210 0.70 +0.4
230,362 - Echvi_0210 0.70 +0.1
230,379 - Echvi_0210 0.72 -0.8
230,385 - Echvi_0210 0.73 -0.2
230,428 - Echvi_0210 0.77 +0.1
230,659 - +1.4
230,691 + +0.6
230,861 + Echvi_0211 0.15 +0.6
230,861 + Echvi_0211 0.15 +0.6
230,862 - Echvi_0211 0.15 -0.2
231,155 + Echvi_0211 0.78 -1.9
231,155 + Echvi_0211 0.78 -0.2
231,156 - Echvi_0211 0.78 +0.8
231,181 + Echvi_0211 0.83 +0.1
231,232 + -0.1
231,262 - -1.6
231,267 - -1.3
231,267 - -1.2
231,295 + +0.6
231,296 - +0.1
231,381 + +0.9
231,381 + +0.8
231,382 - -0.4
231,382 - -1.7
231,385 - Echvi_0212 0.10 +0.1
231,458 - Echvi_0212 0.16 -0.2
231,458 - Echvi_0212 0.16 -0.5
231,617 + Echvi_0212 0.29 +4.0
231,618 - Echvi_0212 0.29 -0.2
231,622 + Echvi_0212 0.29 +0.7
231,623 - Echvi_0212 0.29 +1.4
231,681 + Echvi_0212 0.34 -0.2
232,019 + Echvi_0212 0.61 -0.5
232,109 - Echvi_0212 0.68 +0.1
232,220 + Echvi_0212 0.77 +0.1
232,221 - Echvi_0212 0.77 -0.4
232,247 - Echvi_0212 0.79 +1.6
232,264 + Echvi_0212 0.80 -1.1
232,292 + Echvi_0212 0.83 +1.3
232,292 + Echvi_0212 0.83 -0.0
232,292 + Echvi_0212 0.83 +0.4
232,306 + Echvi_0212 0.84 -1.2
232,330 + Echvi_0212 0.86 -0.2
232,350 + Echvi_0212 0.87 +0.3
232,351 - Echvi_0212 0.87 -1.5
232,351 - Echvi_0212 0.87 +0.3
232,370 + Echvi_0212 0.89 -0.7
232,545 - +0.1
232,754 - -0.2
232,758 - -0.3
232,889 - -0.1
232,918 + -0.4
232,919 - -0.8
232,919 - -1.4
233,050 + +0.3
233,050 + +0.1
233,050 + -0.9
233,050 + -0.6
233,076 + -0.8
233,079 + +1.4
233,080 - +0.2
233,102 + Echvi_0213 0.13 +0.4
233,103 - Echvi_0213 0.14 -0.1
233,103 - Echvi_0213 0.14 -0.2
233,106 + Echvi_0213 0.15 -0.3
233,106 + Echvi_0213 0.15 +0.6
233,119 + Echvi_0213 0.19 -0.7
233,136 + Echvi_0213 0.24 -2.1
233,136 + Echvi_0213 0.24 +1.2
233,136 + Echvi_0213 0.24 +0.3
233,137 - Echvi_0213 0.24 -0.0
233,155 - Echvi_0213 0.30 -0.8
233,178 + Echvi_0213 0.37 -0.1
233,263 + Echvi_0213 0.64 -0.8
233,373 - +0.5

Or see this region's nucleotide sequence