Strain Fitness in Agrobacterium fabrum C58 around Atu5541

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5539 and Atu5540 overlap by 4 nucleotidesAtu5540 and Atu5541 overlap by 4 nucleotidesAtu5541 and Atu5542 are separated by 62 nucleotidesAtu5542 and Atu5543 are separated by 224 nucleotides Atu5539: Atu5539 - HlyD family secretion protein, at 534,191 to 535,066 Atu5539 Atu5540: Atu5540 - hypothetical protein, at 535,063 to 535,272 Atu5540 Atu5541: Atu5541 - hypothetical protein, at 535,269 to 537,218 Atu5541 Atu5542: Atu5542 - hypothetical protein, at 537,281 to 537,658 Atu5542 Atu5543: Atu5543 - AraC family transcriptional regulator, at 537,883 to 538,530 Atu5543 Position (kb) 535 536 537 538Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 534.303 kb on - strand, within Atu5539at 534.308 kb on - strand, within Atu5539at 534.339 kb on + strand, within Atu5539at 534.422 kb on - strand, within Atu5539at 534.422 kb on - strand, within Atu5539at 534.426 kb on + strand, within Atu5539at 534.477 kb on - strand, within Atu5539at 534.551 kb on + strand, within Atu5539at 534.597 kb on + strand, within Atu5539at 534.615 kb on + strand, within Atu5539at 534.617 kb on - strand, within Atu5539at 534.640 kb on + strand, within Atu5539at 534.715 kb on + strand, within Atu5539at 534.715 kb on - strand, within Atu5539at 534.771 kb on + strand, within Atu5539at 534.773 kb on - strand, within Atu5539at 534.940 kb on + strand, within Atu5539at 534.940 kb on + strand, within Atu5539at 534.959 kb on + strand, within Atu5539at 534.992 kb on + strandat 535.008 kb on - strandat 535.109 kb on + strand, within Atu5540at 535.253 kb on + strandat 535.271 kb on + strandat 535.305 kb on - strandat 535.351 kb on - strandat 535.351 kb on - strandat 535.376 kb on + strandat 535.408 kb on - strandat 535.444 kb on - strandat 535.506 kb on + strand, within Atu5541at 535.506 kb on + strand, within Atu5541at 535.506 kb on + strand, within Atu5541at 535.514 kb on - strand, within Atu5541at 535.514 kb on - strand, within Atu5541at 535.514 kb on - strand, within Atu5541at 535.514 kb on - strand, within Atu5541at 535.516 kb on - strand, within Atu5541at 535.518 kb on + strand, within Atu5541at 535.536 kb on - strand, within Atu5541at 535.565 kb on - strand, within Atu5541at 535.565 kb on - strand, within Atu5541at 535.595 kb on - strand, within Atu5541at 535.619 kb on + strand, within Atu5541at 535.620 kb on - strand, within Atu5541at 535.669 kb on + strand, within Atu5541at 535.776 kb on - strand, within Atu5541at 535.776 kb on - strand, within Atu5541at 535.776 kb on - strand, within Atu5541at 535.795 kb on + strand, within Atu5541at 535.795 kb on + strand, within Atu5541at 535.803 kb on - strand, within Atu5541at 535.803 kb on - strand, within Atu5541at 535.803 kb on - strand, within Atu5541at 535.946 kb on - strand, within Atu5541at 535.946 kb on - strand, within Atu5541at 535.962 kb on - strand, within Atu5541at 535.964 kb on + strand, within Atu5541at 535.970 kb on + strand, within Atu5541at 536.130 kb on - strand, within Atu5541at 536.138 kb on + strand, within Atu5541at 536.194 kb on - strand, within Atu5541at 536.212 kb on + strand, within Atu5541at 536.256 kb on + strand, within Atu5541at 536.271 kb on + strand, within Atu5541at 536.283 kb on - strand, within Atu5541at 536.301 kb on - strand, within Atu5541at 536.302 kb on + strand, within Atu5541at 536.314 kb on + strand, within Atu5541at 536.327 kb on - strand, within Atu5541at 536.388 kb on + strand, within Atu5541at 536.439 kb on - strand, within Atu5541at 536.514 kb on - strand, within Atu5541at 536.514 kb on - strand, within Atu5541at 536.577 kb on + strand, within Atu5541at 536.582 kb on + strand, within Atu5541at 536.731 kb on - strand, within Atu5541at 536.788 kb on + strand, within Atu5541at 536.817 kb on + strand, within Atu5541at 536.840 kb on + strand, within Atu5541at 536.865 kb on + strand, within Atu5541at 536.865 kb on + strand, within Atu5541at 536.878 kb on - strand, within Atu5541at 536.948 kb on + strand, within Atu5541at 536.948 kb on + strand, within Atu5541at 536.980 kb on - strand, within Atu5541at 536.989 kb on - strand, within Atu5541at 537.076 kb on - strandat 537.161 kb on + strandat 537.161 kb on + strandat 537.188 kb on - strandat 537.280 kb on + strandat 537.298 kb on + strandat 537.306 kb on - strandat 537.308 kb on + strandat 537.308 kb on + strandat 537.316 kb on - strandat 537.316 kb on - strandat 537.318 kb on + strandat 537.318 kb on + strandat 537.320 kb on + strand, within Atu5542at 537.320 kb on + strand, within Atu5542at 537.325 kb on + strand, within Atu5542at 537.328 kb on - strand, within Atu5542at 537.353 kb on + strand, within Atu5542at 537.353 kb on + strand, within Atu5542at 537.361 kb on - strand, within Atu5542at 537.378 kb on + strand, within Atu5542at 537.396 kb on + strand, within Atu5542at 537.401 kb on + strand, within Atu5542at 537.401 kb on + strand, within Atu5542at 537.454 kb on + strand, within Atu5542at 537.464 kb on + strand, within Atu5542at 537.468 kb on - strand, within Atu5542at 537.472 kb on - strand, within Atu5542at 537.474 kb on + strand, within Atu5542at 537.532 kb on - strand, within Atu5542at 537.579 kb on - strand, within Atu5542at 537.607 kb on + strand, within Atu5542at 537.623 kb on + strandat 537.638 kb on + strandat 537.802 kb on + strandat 537.802 kb on + strandat 537.826 kb on - strandat 537.856 kb on + strandat 537.871 kb on + strandat 537.879 kb on + strandat 537.896 kb on - strandat 537.913 kb on + strandat 537.973 kb on + strand, within Atu5543at 538.042 kb on - strand, within Atu5543at 538.044 kb on + strand, within Atu5543at 538.071 kb on + strand, within Atu5543at 538.146 kb on - strand, within Atu5543at 538.151 kb on - strand, within Atu5543at 538.173 kb on - strand, within Atu5543at 538.198 kb on - strand, within Atu5543

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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534,303 - Atu5539 0.13 -0.0
534,308 - Atu5539 0.13 +0.0
534,339 + Atu5539 0.17 -0.9
534,422 - Atu5539 0.26 +0.5
534,422 - Atu5539 0.26 +2.0
534,426 + Atu5539 0.27 -0.2
534,477 - Atu5539 0.33 +0.4
534,551 + Atu5539 0.41 -0.3
534,597 + Atu5539 0.46 +0.8
534,615 + Atu5539 0.48 +0.8
534,617 - Atu5539 0.49 +0.3
534,640 + Atu5539 0.51 +0.7
534,715 + Atu5539 0.60 -0.4
534,715 - Atu5539 0.60 +0.2
534,771 + Atu5539 0.66 +0.5
534,773 - Atu5539 0.66 +1.4
534,940 + Atu5539 0.86 -0.7
534,940 + Atu5539 0.86 +0.2
534,959 + Atu5539 0.88 -1.5
534,992 + +1.1
535,008 - +0.1
535,109 + Atu5540 0.22 +0.0
535,253 + -0.0
535,271 + -0.5
535,305 - +1.1
535,351 - +0.2
535,351 - -1.2
535,376 + +1.1
535,408 - +0.1
535,444 - +0.0
535,506 + Atu5541 0.12 +0.6
535,506 + Atu5541 0.12 +0.4
535,506 + Atu5541 0.12 +0.1
535,514 - Atu5541 0.13 -0.2
535,514 - Atu5541 0.13 +1.7
535,514 - Atu5541 0.13 +1.3
535,514 - Atu5541 0.13 +1.3
535,516 - Atu5541 0.13 +0.6
535,518 + Atu5541 0.13 +0.1
535,536 - Atu5541 0.14 +1.8
535,565 - Atu5541 0.15 -0.9
535,565 - Atu5541 0.15 +0.5
535,595 - Atu5541 0.17 +1.1
535,619 + Atu5541 0.18 -0.1
535,620 - Atu5541 0.18 -0.2
535,669 + Atu5541 0.21 +0.6
535,776 - Atu5541 0.26 +0.8
535,776 - Atu5541 0.26 +0.7
535,776 - Atu5541 0.26 -0.5
535,795 + Atu5541 0.27 -0.0
535,795 + Atu5541 0.27 +1.7
535,803 - Atu5541 0.27 +0.1
535,803 - Atu5541 0.27 +1.3
535,803 - Atu5541 0.27 -0.5
535,946 - Atu5541 0.35 +0.3
535,946 - Atu5541 0.35 +0.7
535,962 - Atu5541 0.36 +0.1
535,964 + Atu5541 0.36 +0.2
535,970 + Atu5541 0.36 +0.1
536,130 - Atu5541 0.44 +0.3
536,138 + Atu5541 0.45 +1.3
536,194 - Atu5541 0.47 +2.7
536,212 + Atu5541 0.48 +0.9
536,256 + Atu5541 0.51 +0.3
536,271 + Atu5541 0.51 +1.1
536,283 - Atu5541 0.52 -0.0
536,301 - Atu5541 0.53 +0.5
536,302 + Atu5541 0.53 +1.0
536,314 + Atu5541 0.54 +0.5
536,327 - Atu5541 0.54 -0.0
536,388 + Atu5541 0.57 -0.5
536,439 - Atu5541 0.60 +0.7
536,514 - Atu5541 0.64 +0.7
536,514 - Atu5541 0.64 +0.7
536,577 + Atu5541 0.67 +0.2
536,582 + Atu5541 0.67 -1.6
536,731 - Atu5541 0.75 +1.7
536,788 + Atu5541 0.78 -0.6
536,817 + Atu5541 0.79 +1.7
536,840 + Atu5541 0.81 -0.1
536,865 + Atu5541 0.82 -0.1
536,865 + Atu5541 0.82 +1.1
536,878 - Atu5541 0.83 +1.4
536,948 + Atu5541 0.86 +0.6
536,948 + Atu5541 0.86 +0.3
536,980 - Atu5541 0.88 -0.6
536,989 - Atu5541 0.88 +0.4
537,076 - -0.3
537,161 + +0.2
537,161 + +1.0
537,188 - -0.1
537,280 + +0.5
537,298 + -0.1
537,306 - +0.6
537,308 + -0.1
537,308 + -0.2
537,316 - +1.6
537,316 - -0.9
537,318 + +2.1
537,318 + +4.3
537,320 + Atu5542 0.10 +0.5
537,320 + Atu5542 0.10 -0.0
537,325 + Atu5542 0.12 +0.4
537,328 - Atu5542 0.12 -0.3
537,353 + Atu5542 0.19 -1.4
537,353 + Atu5542 0.19 +0.4
537,361 - Atu5542 0.21 -0.0
537,378 + Atu5542 0.26 +0.7
537,396 + Atu5542 0.30 -0.1
537,401 + Atu5542 0.32 -0.0
537,401 + Atu5542 0.32 +0.9
537,454 + Atu5542 0.46 +0.5
537,464 + Atu5542 0.48 -0.7
537,468 - Atu5542 0.49 -0.8
537,472 - Atu5542 0.51 +0.1
537,474 + Atu5542 0.51 +0.4
537,532 - Atu5542 0.66 +0.4
537,579 - Atu5542 0.79 -0.2
537,607 + Atu5542 0.86 +1.0
537,623 + +1.4
537,638 + +0.7
537,802 + +1.2
537,802 + +0.1
537,826 - +0.4
537,856 + +0.8
537,871 + -0.6
537,879 + +1.7
537,896 - +0.8
537,913 + +0.1
537,973 + Atu5543 0.14 -0.1
538,042 - Atu5543 0.25 +0.5
538,044 + Atu5543 0.25 +0.0
538,071 + Atu5543 0.29 +0.0
538,146 - Atu5543 0.41 -1.9
538,151 - Atu5543 0.41 +0.1
538,173 - Atu5543 0.45 +0.2
538,198 - Atu5543 0.49 +0.4

Or see this region's nucleotide sequence