Strain Fitness in Agrobacterium fabrum C58 around Atu3652

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3651 and Atu3652 are separated by 137 nucleotidesAtu3652 and Atu3653 are separated by 47 nucleotidesAtu3653 and Atu3654 are separated by 553 nucleotides Atu3651: Atu3651 - hypothetical protein, at 702,043 to 702,909 Atu3651 Atu3652: Atu3652 - hypothetical protein, at 703,047 to 703,889 Atu3652 Atu3653: Atu3653 - hypothetical protein, at 703,937 to 704,173 Atu3653 Atu3654: Atu3654 - hypothetical protein, at 704,727 to 705,242 Atu3654 Position (kb) 703 704Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 702.156 kb on - strand, within Atu3651at 702.215 kb on - strand, within Atu3651at 702.215 kb on - strand, within Atu3651at 702.240 kb on - strand, within Atu3651at 702.290 kb on + strand, within Atu3651at 702.303 kb on - strand, within Atu3651at 702.309 kb on + strand, within Atu3651at 702.317 kb on - strand, within Atu3651at 702.345 kb on + strand, within Atu3651at 702.345 kb on + strand, within Atu3651at 702.345 kb on + strand, within Atu3651at 702.412 kb on + strand, within Atu3651at 702.412 kb on - strand, within Atu3651at 702.414 kb on + strand, within Atu3651at 702.414 kb on - strand, within Atu3651at 702.487 kb on + strand, within Atu3651at 702.506 kb on + strand, within Atu3651at 702.569 kb on + strand, within Atu3651at 702.577 kb on - strand, within Atu3651at 702.587 kb on - strand, within Atu3651at 702.629 kb on - strand, within Atu3651at 702.694 kb on - strand, within Atu3651at 702.773 kb on - strand, within Atu3651at 702.797 kb on + strand, within Atu3651at 702.805 kb on - strand, within Atu3651at 702.916 kb on + strandat 702.931 kb on + strandat 702.948 kb on + strandat 702.951 kb on - strandat 702.956 kb on - strandat 702.965 kb on - strandat 702.978 kb on + strandat 702.978 kb on + strandat 703.105 kb on - strandat 703.128 kb on - strandat 703.205 kb on - strand, within Atu3652at 703.220 kb on + strand, within Atu3652at 703.220 kb on - strand, within Atu3652at 703.227 kb on - strand, within Atu3652at 703.342 kb on + strand, within Atu3652at 703.342 kb on - strand, within Atu3652at 703.419 kb on + strand, within Atu3652at 703.437 kb on - strand, within Atu3652at 703.438 kb on - strand, within Atu3652at 703.462 kb on - strand, within Atu3652at 703.462 kb on - strand, within Atu3652at 703.502 kb on - strand, within Atu3652at 703.546 kb on + strand, within Atu3652at 703.641 kb on + strand, within Atu3652at 703.659 kb on + strand, within Atu3652at 703.771 kb on + strand, within Atu3652at 703.776 kb on + strand, within Atu3652at 703.776 kb on + strand, within Atu3652at 703.818 kb on - strandat 703.932 kb on - strandat 703.962 kb on - strand, within Atu3653at 703.998 kb on + strand, within Atu3653at 704.016 kb on - strand, within Atu3653at 704.034 kb on + strand, within Atu3653at 704.115 kb on - strand, within Atu3653at 704.176 kb on - strandat 704.193 kb on + strandat 704.201 kb on - strandat 704.228 kb on + strandat 704.270 kb on + strandat 704.270 kb on + strandat 704.270 kb on + strandat 704.271 kb on - strandat 704.278 kb on - strandat 704.320 kb on + strandat 704.394 kb on - strandat 704.534 kb on + strandat 704.568 kb on + strandat 704.591 kb on + strandat 704.593 kb on + strandat 704.599 kb on - strandat 704.601 kb on - strandat 704.606 kb on + strandat 704.625 kb on - strandat 704.630 kb on - strandat 704.640 kb on - strandat 704.666 kb on - strandat 704.679 kb on + strandat 704.754 kb on + strandat 704.820 kb on - strand, within Atu3654at 704.833 kb on - strand, within Atu3654at 704.868 kb on + strand, within Atu3654at 704.871 kb on + strand, within Atu3654at 704.871 kb on + strand, within Atu3654at 704.878 kb on + strand, within Atu3654at 704.878 kb on + strand, within Atu3654at 704.881 kb on - strand, within Atu3654at 704.886 kb on - strand, within Atu3654at 704.888 kb on - strand, within Atu3654

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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702,156 - Atu3651 0.13 +0.7
702,215 - Atu3651 0.20 +0.1
702,215 - Atu3651 0.20 +0.2
702,240 - Atu3651 0.23 +0.4
702,290 + Atu3651 0.28 +0.1
702,303 - Atu3651 0.30 +0.4
702,309 + Atu3651 0.31 +0.7
702,317 - Atu3651 0.32 -0.3
702,345 + Atu3651 0.35 -0.2
702,345 + Atu3651 0.35 -0.3
702,345 + Atu3651 0.35 +0.3
702,412 + Atu3651 0.43 -0.1
702,412 - Atu3651 0.43 -0.8
702,414 + Atu3651 0.43 +0.2
702,414 - Atu3651 0.43 +0.6
702,487 + Atu3651 0.51 +0.7
702,506 + Atu3651 0.53 +0.1
702,569 + Atu3651 0.61 +1.0
702,577 - Atu3651 0.62 +0.2
702,587 - Atu3651 0.63 +0.9
702,629 - Atu3651 0.68 +0.1
702,694 - Atu3651 0.75 +0.4
702,773 - Atu3651 0.84 -0.2
702,797 + Atu3651 0.87 +0.1
702,805 - Atu3651 0.88 +1.6
702,916 + +2.1
702,931 + -0.8
702,948 + +0.1
702,951 - -0.0
702,956 - +0.3
702,965 - -0.2
702,978 + -0.3
702,978 + +0.2
703,105 - +0.8
703,128 - +0.3
703,205 - Atu3652 0.19 +0.1
703,220 + Atu3652 0.21 +0.3
703,220 - Atu3652 0.21 +1.1
703,227 - Atu3652 0.21 +0.3
703,342 + Atu3652 0.35 +0.2
703,342 - Atu3652 0.35 -0.1
703,419 + Atu3652 0.44 +1.8
703,437 - Atu3652 0.46 +1.0
703,438 - Atu3652 0.46 +0.4
703,462 - Atu3652 0.49 +0.2
703,462 - Atu3652 0.49 +0.4
703,502 - Atu3652 0.54 +0.3
703,546 + Atu3652 0.59 +0.8
703,641 + Atu3652 0.70 +0.1
703,659 + Atu3652 0.73 +0.1
703,771 + Atu3652 0.86 -0.6
703,776 + Atu3652 0.86 +0.4
703,776 + Atu3652 0.86 +0.3
703,818 - +0.2
703,932 - -1.8
703,962 - Atu3653 0.11 -0.4
703,998 + Atu3653 0.26 +1.0
704,016 - Atu3653 0.33 -0.1
704,034 + Atu3653 0.41 +0.2
704,115 - Atu3653 0.75 +0.3
704,176 - -0.0
704,193 + +0.0
704,201 - +0.3
704,228 + +0.0
704,270 + +0.5
704,270 + -1.0
704,270 + -0.2
704,271 - +0.2
704,278 - -0.3
704,320 + +0.2
704,394 - -0.1
704,534 + +0.6
704,568 + -1.0
704,591 + +1.4
704,593 + +4.2
704,599 - -0.5
704,601 - +0.3
704,606 + -0.3
704,625 - +0.2
704,630 - +0.4
704,640 - +0.1
704,666 - +0.4
704,679 + -0.3
704,754 + +0.2
704,820 - Atu3654 0.18 +0.3
704,833 - Atu3654 0.21 +0.0
704,868 + Atu3654 0.27 -0.0
704,871 + Atu3654 0.28 -0.0
704,871 + Atu3654 0.28 +0.7
704,878 + Atu3654 0.29 +1.2
704,878 + Atu3654 0.29 +0.8
704,881 - Atu3654 0.30 +0.6
704,886 - Atu3654 0.31 +0.3
704,888 - Atu3654 0.31 +1.4

Or see this region's nucleotide sequence