Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_820

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_819 and PfGW456L13_820 are separated by 366 nucleotidesPfGW456L13_820 and PfGW456L13_821 are separated by 122 nucleotides PfGW456L13_819 - ATP-dependent DNA helicase Rep, at 917,404 to 919,413 _819 PfGW456L13_820 - GGDEF domain/EAL domain protein, at 919,780 to 921,348 _820 PfGW456L13_821 - Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog, at 921,471 to 922,874 _821 Position (kb) 919 920 921 922Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 919.414 kb on - strandat 919.414 kb on - strandat 919.414 kb on - strandat 919.414 kb on - strandat 919.414 kb on - strandat 919.414 kb on - strandat 919.414 kb on - strandat 919.414 kb on - strandat 919.414 kb on - strandat 919.417 kb on + strandat 919.417 kb on + strandat 919.417 kb on + strandat 919.418 kb on - strandat 919.418 kb on - strandat 919.497 kb on + strandat 919.497 kb on + strandat 919.498 kb on - strandat 919.505 kb on + strandat 919.506 kb on - strandat 919.511 kb on + strandat 919.512 kb on - strandat 919.512 kb on - strandat 919.512 kb on - strandat 919.512 kb on - strandat 919.512 kb on - strandat 919.512 kb on - strandat 919.512 kb on - strandat 919.561 kb on + strandat 919.571 kb on - strandat 919.580 kb on + strandat 919.635 kb on + strandat 919.635 kb on + strandat 919.636 kb on - strandat 919.636 kb on - strandat 919.649 kb on + strandat 919.649 kb on + strandat 919.649 kb on + strandat 919.649 kb on + strandat 919.650 kb on - strandat 919.650 kb on - strandat 919.650 kb on - strandat 919.666 kb on + strandat 919.667 kb on - strandat 919.667 kb on - strandat 919.674 kb on + strandat 919.674 kb on + strandat 919.674 kb on + strandat 919.674 kb on + strandat 919.674 kb on + strandat 919.674 kb on + strandat 919.674 kb on + strandat 919.675 kb on - strandat 919.675 kb on - strandat 919.675 kb on - strandat 919.675 kb on - strandat 919.713 kb on - strandat 919.713 kb on - strandat 919.765 kb on - strandat 919.847 kb on + strandat 919.848 kb on - strandat 919.998 kb on - strand, within PfGW456L13_820at 920.173 kb on + strand, within PfGW456L13_820at 920.361 kb on - strand, within PfGW456L13_820at 920.361 kb on - strand, within PfGW456L13_820at 920.375 kb on - strand, within PfGW456L13_820at 920.426 kb on - strand, within PfGW456L13_820at 920.614 kb on + strand, within PfGW456L13_820at 920.614 kb on + strand, within PfGW456L13_820at 920.765 kb on + strand, within PfGW456L13_820at 921.259 kb on + strandat 921.260 kb on - strandat 921.260 kb on - strandat 921.260 kb on - strandat 921.260 kb on - strandat 921.260 kb on - strandat 921.301 kb on + strandat 921.302 kb on - strandat 921.302 kb on - strandat 921.368 kb on - strandat 921.368 kb on - strandat 921.461 kb on + strandat 921.671 kb on - strand, within PfGW456L13_821at 921.671 kb on - strand, within PfGW456L13_821at 921.722 kb on + strand, within PfGW456L13_821at 921.991 kb on + strand, within PfGW456L13_821at 921.992 kb on - strand, within PfGW456L13_821at 922.123 kb on + strand, within PfGW456L13_821at 922.123 kb on + strand, within PfGW456L13_821at 922.123 kb on + strand, within PfGW456L13_821at 922.124 kb on - strand, within PfGW456L13_821at 922.124 kb on - strand, within PfGW456L13_821at 922.124 kb on - strand, within PfGW456L13_821at 922.124 kb on - strand, within PfGW456L13_821at 922.216 kb on + strand, within PfGW456L13_821at 922.216 kb on + strand, within PfGW456L13_821at 922.217 kb on - strand, within PfGW456L13_821at 922.217 kb on - strand, within PfGW456L13_821at 922.342 kb on + strand, within PfGW456L13_821at 922.342 kb on + strand, within PfGW456L13_821at 922.342 kb on + strand, within PfGW456L13_821at 922.342 kb on + strand, within PfGW456L13_821at 922.342 kb on + strand, within PfGW456L13_821at 922.342 kb on + strand, within PfGW456L13_821at 922.343 kb on - strand, within PfGW456L13_821at 922.343 kb on - strand, within PfGW456L13_821at 922.343 kb on - strand, within PfGW456L13_821at 922.343 kb on - strand, within PfGW456L13_821at 922.343 kb on - strand, within PfGW456L13_821at 922.343 kb on - strand, within PfGW456L13_821at 922.343 kb on - strand, within PfGW456L13_821at 922.343 kb on - strand, within PfGW456L13_821

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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919,414 - -2.0
919,414 - -3.2
919,414 - -2.0
919,414 - +2.8
919,414 - +2.9
919,414 - -2.6
919,414 - +0.5
919,414 - +1.1
919,414 - -0.7
919,417 + +0.9
919,417 + -2.1
919,417 + +0.5
919,418 - +1.8
919,418 - -0.4
919,497 + -2.0
919,497 + +0.2
919,498 - +3.2
919,505 + +0.5
919,506 - -2.4
919,511 + +0.7
919,512 - +1.9
919,512 - +0.1
919,512 - +2.6
919,512 - +2.4
919,512 - -0.0
919,512 - -1.0
919,512 - -3.9
919,561 + -1.1
919,571 - +2.7
919,580 + +0.1
919,635 + +2.4
919,635 + +1.3
919,636 - +2.9
919,636 - +2.4
919,649 + +1.1
919,649 + -2.1
919,649 + +0.7
919,649 + +1.3
919,650 - +0.2
919,650 - +2.4
919,650 - -0.7
919,666 + +1.0
919,667 - +0.5
919,667 - +1.4
919,674 + +2.8
919,674 + +0.7
919,674 + -3.5
919,674 + +0.0
919,674 + +0.8
919,674 + +1.0
919,674 + -3.0
919,675 - +1.0
919,675 - +1.8
919,675 - -2.3
919,675 - -1.2
919,713 - -2.0
919,713 - +2.7
919,765 - -2.6
919,847 + +0.4
919,848 - -2.5
919,998 - PfGW456L13_820 0.14 -2.9
920,173 + PfGW456L13_820 0.25 +1.4
920,361 - PfGW456L13_820 0.37 +1.2
920,361 - PfGW456L13_820 0.37 +2.3
920,375 - PfGW456L13_820 0.38 +1.2
920,426 - PfGW456L13_820 0.41 +1.7
920,614 + PfGW456L13_820 0.53 +1.8
920,614 + PfGW456L13_820 0.53 +2.6
920,765 + PfGW456L13_820 0.63 +1.7
921,259 + -3.4
921,260 - -1.3
921,260 - +2.1
921,260 - -3.0
921,260 - +1.3
921,260 - -2.0
921,301 + -2.9
921,302 - +2.1
921,302 - +0.8
921,368 - -3.0
921,368 - -0.2
921,461 + -0.5
921,671 - PfGW456L13_821 0.14 -2.0
921,671 - PfGW456L13_821 0.14 +1.5
921,722 + PfGW456L13_821 0.18 +2.3
921,991 + PfGW456L13_821 0.37 +0.1
921,992 - PfGW456L13_821 0.37 +1.5
922,123 + PfGW456L13_821 0.46 -1.0
922,123 + PfGW456L13_821 0.46 +1.0
922,123 + PfGW456L13_821 0.46 -1.4
922,124 - PfGW456L13_821 0.47 -1.5
922,124 - PfGW456L13_821 0.47 -0.6
922,124 - PfGW456L13_821 0.47 -0.8
922,124 - PfGW456L13_821 0.47 +2.1
922,216 + PfGW456L13_821 0.53 -0.7
922,216 + PfGW456L13_821 0.53 -2.1
922,217 - PfGW456L13_821 0.53 +0.1
922,217 - PfGW456L13_821 0.53 -0.4
922,342 + PfGW456L13_821 0.62 -1.2
922,342 + PfGW456L13_821 0.62 -0.9
922,342 + PfGW456L13_821 0.62 -2.4
922,342 + PfGW456L13_821 0.62 -1.7
922,342 + PfGW456L13_821 0.62 +0.8
922,342 + PfGW456L13_821 0.62 -0.9
922,343 - PfGW456L13_821 0.62 +1.6
922,343 - PfGW456L13_821 0.62 +0.7
922,343 - PfGW456L13_821 0.62 -2.9
922,343 - PfGW456L13_821 0.62 +1.0
922,343 - PfGW456L13_821 0.62 +2.7
922,343 - PfGW456L13_821 0.62 +1.0
922,343 - PfGW456L13_821 0.62 +0.3
922,343 - PfGW456L13_821 0.62 -1.0

Or see this region's nucleotide sequence