Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_726 and PfGW456L13_727 are separated by 377 nucleotides PfGW456L13_727 and PfGW456L13_728 are separated by 205 nucleotides
PfGW456L13_726 - Phosphogluconate repressor HexR, RpiR family, at 824,700 to 825,566
_726
PfGW456L13_727 - LysR family transcriptional regulator PA5437, at 825,944 to 826,891
_727
PfGW456L13_728 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 827,097 to 828,512
_728
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 824.979 kb on + strand, within PfGW456L13_726 at 824.979 kb on + strand, within PfGW456L13_726 at 824.980 kb on - strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.011 kb on + strand, within PfGW456L13_726 at 825.012 kb on - strand, within PfGW456L13_726 at 825.012 kb on - strand, within PfGW456L13_726 at 825.012 kb on - strand, within PfGW456L13_726 at 825.012 kb on - strand, within PfGW456L13_726 at 825.099 kb on + strand, within PfGW456L13_726 at 825.099 kb on + strand, within PfGW456L13_726 at 825.100 kb on - strand, within PfGW456L13_726 at 825.100 kb on - strand, within PfGW456L13_726 at 825.100 kb on - strand, within PfGW456L13_726 at 825.160 kb on + strand, within PfGW456L13_726 at 825.161 kb on - strand, within PfGW456L13_726 at 825.161 kb on - strand, within PfGW456L13_726 at 825.178 kb on - strand, within PfGW456L13_726 at 825.178 kb on - strand, within PfGW456L13_726 at 825.399 kb on + strand, within PfGW456L13_726 at 825.399 kb on + strand, within PfGW456L13_726 at 825.399 kb on + strand, within PfGW456L13_726 at 825.635 kb on + strand at 825.635 kb on + strand at 825.636 kb on - strand at 825.685 kb on + strand at 825.685 kb on + strand at 825.685 kb on + strand at 825.685 kb on + strand at 826.196 kb on + strand, within PfGW456L13_727 at 826.196 kb on + strand, within PfGW456L13_727 at 826.196 kb on + strand, within PfGW456L13_727 at 826.197 kb on - strand, within PfGW456L13_727 at 826.197 kb on - strand, within PfGW456L13_727 at 826.197 kb on - strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.269 kb on + strand, within PfGW456L13_727 at 826.270 kb on - strand, within PfGW456L13_727 at 826.323 kb on + strand, within PfGW456L13_727 at 826.324 kb on - strand, within PfGW456L13_727 at 826.324 kb on - strand, within PfGW456L13_727 at 826.324 kb on - strand, within PfGW456L13_727 at 826.694 kb on + strand, within PfGW456L13_727 at 826.719 kb on + strand, within PfGW456L13_727 at 826.720 kb on - strand, within PfGW456L13_727 at 826.720 kb on - strand, within PfGW456L13_727 at 826.737 kb on + strand, within PfGW456L13_727 at 826.737 kb on + strand, within PfGW456L13_727 at 826.738 kb on - strand, within PfGW456L13_727 at 826.738 kb on - strand, within PfGW456L13_727 at 826.833 kb on + strand at 826.833 kb on + strand at 826.833 kb on + strand at 826.833 kb on + strand at 826.833 kb on + strand at 826.833 kb on + strand at 826.834 kb on - strand at 826.946 kb on - strand at 827.006 kb on - strand at 827.057 kb on + strand at 827.057 kb on + strand at 827.058 kb on - strand at 827.058 kb on - strand at 827.058 kb on - strand at 827.058 kb on - strand at 827.149 kb on + strand at 827.150 kb on - strand at 827.150 kb on - strand at 827.150 kb on - strand at 827.191 kb on - strand at 827.476 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.699 kb on + strand, within PfGW456L13_728 at 827.700 kb on - strand, within PfGW456L13_728 at 827.700 kb on - strand, within PfGW456L13_728 at 827.700 kb on - strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.853 kb on + strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728 at 827.854 kb on - strand, within PfGW456L13_728
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 824,979 + PfGW456L13_726 0.32 +0.9 824,979 + PfGW456L13_726 0.32 -2.3 824,980 - PfGW456L13_726 0.32 -3.4 825,011 + PfGW456L13_726 0.36 -2.4 825,011 + PfGW456L13_726 0.36 -3.4 825,011 + PfGW456L13_726 0.36 -1.6 825,011 + PfGW456L13_726 0.36 -0.2 825,011 + PfGW456L13_726 0.36 +1.9 825,011 + PfGW456L13_726 0.36 -2.3 825,012 - PfGW456L13_726 0.36 -0.8 825,012 - PfGW456L13_726 0.36 +1.4 825,012 - PfGW456L13_726 0.36 -2.1 825,012 - PfGW456L13_726 0.36 -0.8 825,099 + PfGW456L13_726 0.46 +2.0 825,099 + PfGW456L13_726 0.46 -0.4 825,100 - PfGW456L13_726 0.46 +0.5 825,100 - PfGW456L13_726 0.46 -0.2 825,100 - PfGW456L13_726 0.46 -1.6 825,160 + PfGW456L13_726 0.53 -1.2 825,161 - PfGW456L13_726 0.53 -2.1 825,161 - PfGW456L13_726 0.53 -2.9 825,178 - PfGW456L13_726 0.55 +2.7 825,178 - PfGW456L13_726 0.55 -0.6 825,399 + PfGW456L13_726 0.81 -1.7 825,399 + PfGW456L13_726 0.81 +1.3 825,399 + PfGW456L13_726 0.81 -0.7 825,635 + +2.7 825,635 + -1.6 825,636 - -0.4 825,685 + +0.3 825,685 + +1.4 825,685 + +0.5 825,685 + -2.5 826,196 + PfGW456L13_727 0.27 +2.0 826,196 + PfGW456L13_727 0.27 +0.2 826,196 + PfGW456L13_727 0.27 +1.4 826,197 - PfGW456L13_727 0.27 -1.7 826,197 - PfGW456L13_727 0.27 +1.4 826,197 - PfGW456L13_727 0.27 -1.5 826,269 + PfGW456L13_727 0.34 +1.6 826,269 + PfGW456L13_727 0.34 +0.2 826,269 + PfGW456L13_727 0.34 -0.8 826,269 + PfGW456L13_727 0.34 +0.2 826,269 + PfGW456L13_727 0.34 +1.5 826,270 - PfGW456L13_727 0.34 +0.6 826,323 + PfGW456L13_727 0.40 +0.7 826,324 - PfGW456L13_727 0.40 +0.2 826,324 - PfGW456L13_727 0.40 +0.3 826,324 - PfGW456L13_727 0.40 -3.1 826,694 + PfGW456L13_727 0.79 +3.7 826,719 + PfGW456L13_727 0.82 +3.4 826,720 - PfGW456L13_727 0.82 +0.9 826,720 - PfGW456L13_727 0.82 +3.3 826,737 + PfGW456L13_727 0.84 -2.0 826,737 + PfGW456L13_727 0.84 +1.5 826,738 - PfGW456L13_727 0.84 +1.7 826,738 - PfGW456L13_727 0.84 -1.3 826,833 + -0.6 826,833 + -1.8 826,833 + -0.5 826,833 + -3.5 826,833 + -3.4 826,833 + +0.9 826,834 - +1.0 826,946 - -0.6 827,006 - -2.0 827,057 + -2.4 827,057 + -1.1 827,058 - +0.7 827,058 - -2.5 827,058 - +3.2 827,058 - -2.1 827,149 + +0.1 827,150 - +1.2 827,150 - -3.5 827,150 - +1.0 827,191 - +1.2 827,476 + PfGW456L13_728 0.27 -0.8 827,699 + PfGW456L13_728 0.43 -1.3 827,699 + PfGW456L13_728 0.43 +1.4 827,699 + PfGW456L13_728 0.43 -0.1 827,699 + PfGW456L13_728 0.43 +1.9 827,700 - PfGW456L13_728 0.43 -2.3 827,700 - PfGW456L13_728 0.43 -1.2 827,700 - PfGW456L13_728 0.43 +0.6 827,853 + PfGW456L13_728 0.53 -0.1 827,853 + PfGW456L13_728 0.53 -2.5 827,853 + PfGW456L13_728 0.53 -2.9 827,853 + PfGW456L13_728 0.53 +1.1 827,853 + PfGW456L13_728 0.53 -1.6 827,854 - PfGW456L13_728 0.53 -2.9 827,854 - PfGW456L13_728 0.53 -2.2 827,854 - PfGW456L13_728 0.53 -1.9 827,854 - PfGW456L13_728 0.53 +0.2 827,854 - PfGW456L13_728 0.53 +2.2 827,854 - PfGW456L13_728 0.53 -0.2 827,854 - PfGW456L13_728 0.53 -3.6
Or see this region's nucleotide sequence