Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_7

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_6 and PfGW456L13_7 are separated by 546 nucleotidesPfGW456L13_7 and PfGW456L13_8 are separated by 11 nucleotides PfGW456L13_6 - FIG000605: protein co-occurring with transport systems (COG1739), at 10,688 to 11,269 _6 PfGW456L13_7 - ABC transporter ATP-binding protein, at 11,816 to 13,381 _7 PfGW456L13_8 - Nucleoside ABC transporter, permease protein 1, at 13,393 to 14,499 _8 Position (kb) 11 12 13 14Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 11.319 kb on + strandat 11.320 kb on - strandat 11.320 kb on - strandat 11.326 kb on + strandat 11.326 kb on + strandat 11.326 kb on + strandat 11.326 kb on + strandat 11.326 kb on + strandat 11.327 kb on - strandat 11.327 kb on - strandat 11.374 kb on + strandat 11.383 kb on - strandat 11.469 kb on - strandat 11.469 kb on - strandat 11.492 kb on - strandat 11.512 kb on + strandat 11.513 kb on - strandat 11.513 kb on - strandat 11.513 kb on - strandat 11.541 kb on + strandat 11.541 kb on + strandat 11.541 kb on + strandat 11.542 kb on - strandat 11.592 kb on + strandat 11.592 kb on + strandat 11.592 kb on + strandat 11.592 kb on + strandat 11.592 kb on + strandat 11.593 kb on - strandat 11.759 kb on + strandat 11.759 kb on + strandat 11.759 kb on + strandat 11.759 kb on + strandat 11.760 kb on - strandat 11.760 kb on - strandat 11.760 kb on - strandat 11.866 kb on + strandat 11.866 kb on + strandat 11.867 kb on - strandat 11.883 kb on - strandat 11.984 kb on + strand, within PfGW456L13_7at 11.993 kb on + strand, within PfGW456L13_7at 11.994 kb on - strand, within PfGW456L13_7at 12.093 kb on + strand, within PfGW456L13_7at 12.093 kb on + strand, within PfGW456L13_7at 12.093 kb on + strand, within PfGW456L13_7at 12.093 kb on + strand, within PfGW456L13_7at 12.094 kb on - strand, within PfGW456L13_7at 12.094 kb on - strand, within PfGW456L13_7at 12.094 kb on - strand, within PfGW456L13_7at 12.094 kb on - strand, within PfGW456L13_7at 12.471 kb on + strand, within PfGW456L13_7at 12.573 kb on - strand, within PfGW456L13_7at 12.732 kb on + strand, within PfGW456L13_7at 12.732 kb on + strand, within PfGW456L13_7at 13.498 kb on - strandat 13.855 kb on + strand, within PfGW456L13_8at 13.855 kb on + strand, within PfGW456L13_8at 13.855 kb on + strand, within PfGW456L13_8at 13.855 kb on + strand, within PfGW456L13_8at 13.855 kb on + strand, within PfGW456L13_8at 13.855 kb on + strand, within PfGW456L13_8at 13.856 kb on - strand, within PfGW456L13_8at 13.856 kb on - strand, within PfGW456L13_8at 13.856 kb on - strand, within PfGW456L13_8at 13.856 kb on - strand, within PfGW456L13_8at 13.856 kb on - strand, within PfGW456L13_8at 13.856 kb on - strand, within PfGW456L13_8at 13.999 kb on + strand, within PfGW456L13_8at 13.999 kb on + strand, within PfGW456L13_8at 13.999 kb on + strand, within PfGW456L13_8at 14.317 kb on + strand, within PfGW456L13_8at 14.317 kb on + strand, within PfGW456L13_8at 14.317 kb on + strand, within PfGW456L13_8at 14.317 kb on + strand, within PfGW456L13_8at 14.317 kb on + strand, within PfGW456L13_8at 14.317 kb on + strand, within PfGW456L13_8at 14.318 kb on - strand, within PfGW456L13_8at 14.318 kb on - strand, within PfGW456L13_8

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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11,319 + +2.6
11,320 - -0.7
11,320 - -1.5
11,326 + +2.1
11,326 + -0.8
11,326 + +1.5
11,326 + -0.8
11,326 + -2.0
11,327 - -0.6
11,327 - -0.9
11,374 + +1.2
11,383 - +1.4
11,469 - -1.2
11,469 - -3.4
11,492 - +1.2
11,512 + -1.2
11,513 - -2.1
11,513 - +0.7
11,513 - +1.2
11,541 + +1.5
11,541 + +1.1
11,541 + +1.1
11,542 - -3.0
11,592 + +1.0
11,592 + -0.8
11,592 + -2.3
11,592 + -0.3
11,592 + +3.4
11,593 - -2.6
11,759 + -0.7
11,759 + -0.5
11,759 + +0.3
11,759 + +0.2
11,760 - +0.9
11,760 - -0.5
11,760 - +1.8
11,866 + -1.0
11,866 + +0.3
11,867 - +0.4
11,883 - -2.7
11,984 + PfGW456L13_7 0.11 +0.8
11,993 + PfGW456L13_7 0.11 +3.7
11,994 - PfGW456L13_7 0.11 -2.1
12,093 + PfGW456L13_7 0.18 +3.7
12,093 + PfGW456L13_7 0.18 -0.2
12,093 + PfGW456L13_7 0.18 +1.2
12,093 + PfGW456L13_7 0.18 -2.5
12,094 - PfGW456L13_7 0.18 +1.9
12,094 - PfGW456L13_7 0.18 -1.4
12,094 - PfGW456L13_7 0.18 +0.1
12,094 - PfGW456L13_7 0.18 +2.7
12,471 + PfGW456L13_7 0.42 +1.3
12,573 - PfGW456L13_7 0.48 -2.6
12,732 + PfGW456L13_7 0.58 +0.6
12,732 + PfGW456L13_7 0.58 -1.8
13,498 - -0.8
13,855 + PfGW456L13_8 0.42 -1.6
13,855 + PfGW456L13_8 0.42 -1.5
13,855 + PfGW456L13_8 0.42 -0.1
13,855 + PfGW456L13_8 0.42 +0.1
13,855 + PfGW456L13_8 0.42 +1.2
13,855 + PfGW456L13_8 0.42 +0.4
13,856 - PfGW456L13_8 0.42 +0.1
13,856 - PfGW456L13_8 0.42 +0.7
13,856 - PfGW456L13_8 0.42 +0.3
13,856 - PfGW456L13_8 0.42 -1.4
13,856 - PfGW456L13_8 0.42 +1.1
13,856 - PfGW456L13_8 0.42 +3.4
13,999 + PfGW456L13_8 0.55 +0.8
13,999 + PfGW456L13_8 0.55 -0.6
13,999 + PfGW456L13_8 0.55 +1.5
14,317 + PfGW456L13_8 0.83 +0.9
14,317 + PfGW456L13_8 0.83 +1.2
14,317 + PfGW456L13_8 0.83 +0.8
14,317 + PfGW456L13_8 0.83 -2.6
14,317 + PfGW456L13_8 0.83 -2.6
14,317 + PfGW456L13_8 0.83 +2.4
14,318 - PfGW456L13_8 0.84 -1.4
14,318 - PfGW456L13_8 0.84 +1.0

Or see this region's nucleotide sequence