Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_6 and PfGW456L13_7 are separated by 546 nucleotides PfGW456L13_7 and PfGW456L13_8 are separated by 11 nucleotides
PfGW456L13_6 - FIG000605: protein co-occurring with transport systems (COG1739), at 10,688 to 11,269
_6
PfGW456L13_7 - ABC transporter ATP-binding protein, at 11,816 to 13,381
_7
PfGW456L13_8 - Nucleoside ABC transporter, permease protein 1, at 13,393 to 14,499
_8
Position (kb)
11
12
13
14 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 11.319 kb on + strand at 11.320 kb on - strand at 11.320 kb on - strand at 11.326 kb on + strand at 11.326 kb on + strand at 11.326 kb on + strand at 11.326 kb on + strand at 11.326 kb on + strand at 11.327 kb on - strand at 11.327 kb on - strand at 11.374 kb on + strand at 11.383 kb on - strand at 11.469 kb on - strand at 11.469 kb on - strand at 11.492 kb on - strand at 11.512 kb on + strand at 11.513 kb on - strand at 11.513 kb on - strand at 11.513 kb on - strand at 11.541 kb on + strand at 11.541 kb on + strand at 11.541 kb on + strand at 11.542 kb on - strand at 11.592 kb on + strand at 11.592 kb on + strand at 11.592 kb on + strand at 11.592 kb on + strand at 11.592 kb on + strand at 11.593 kb on - strand at 11.759 kb on + strand at 11.759 kb on + strand at 11.759 kb on + strand at 11.759 kb on + strand at 11.760 kb on - strand at 11.760 kb on - strand at 11.760 kb on - strand at 11.866 kb on + strand at 11.866 kb on + strand at 11.867 kb on - strand at 11.883 kb on - strand at 11.984 kb on + strand, within PfGW456L13_7 at 11.993 kb on + strand, within PfGW456L13_7 at 11.994 kb on - strand, within PfGW456L13_7 at 12.093 kb on + strand, within PfGW456L13_7 at 12.093 kb on + strand, within PfGW456L13_7 at 12.093 kb on + strand, within PfGW456L13_7 at 12.093 kb on + strand, within PfGW456L13_7 at 12.094 kb on - strand, within PfGW456L13_7 at 12.094 kb on - strand, within PfGW456L13_7 at 12.094 kb on - strand, within PfGW456L13_7 at 12.094 kb on - strand, within PfGW456L13_7 at 12.471 kb on + strand, within PfGW456L13_7 at 12.573 kb on - strand, within PfGW456L13_7 at 12.732 kb on + strand, within PfGW456L13_7 at 12.732 kb on + strand, within PfGW456L13_7 at 13.498 kb on - strand at 13.855 kb on + strand, within PfGW456L13_8 at 13.855 kb on + strand, within PfGW456L13_8 at 13.855 kb on + strand, within PfGW456L13_8 at 13.855 kb on + strand, within PfGW456L13_8 at 13.855 kb on + strand, within PfGW456L13_8 at 13.855 kb on + strand, within PfGW456L13_8 at 13.856 kb on - strand, within PfGW456L13_8 at 13.856 kb on - strand, within PfGW456L13_8 at 13.856 kb on - strand, within PfGW456L13_8 at 13.856 kb on - strand, within PfGW456L13_8 at 13.856 kb on - strand, within PfGW456L13_8 at 13.856 kb on - strand, within PfGW456L13_8 at 13.999 kb on + strand, within PfGW456L13_8 at 13.999 kb on + strand, within PfGW456L13_8 at 13.999 kb on + strand, within PfGW456L13_8 at 14.317 kb on + strand, within PfGW456L13_8 at 14.317 kb on + strand, within PfGW456L13_8 at 14.317 kb on + strand, within PfGW456L13_8 at 14.317 kb on + strand, within PfGW456L13_8 at 14.317 kb on + strand, within PfGW456L13_8 at 14.317 kb on + strand, within PfGW456L13_8 at 14.318 kb on - strand, within PfGW456L13_8 at 14.318 kb on - strand, within PfGW456L13_8
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 11,319 + +2.6 11,320 - -0.7 11,320 - -1.5 11,326 + +2.1 11,326 + -0.8 11,326 + +1.5 11,326 + -0.8 11,326 + -2.0 11,327 - -0.6 11,327 - -0.9 11,374 + +1.2 11,383 - +1.4 11,469 - -1.2 11,469 - -3.4 11,492 - +1.2 11,512 + -1.2 11,513 - -2.1 11,513 - +0.7 11,513 - +1.2 11,541 + +1.5 11,541 + +1.1 11,541 + +1.1 11,542 - -3.0 11,592 + +1.0 11,592 + -0.8 11,592 + -2.3 11,592 + -0.3 11,592 + +3.4 11,593 - -2.6 11,759 + -0.7 11,759 + -0.5 11,759 + +0.3 11,759 + +0.2 11,760 - +0.9 11,760 - -0.5 11,760 - +1.8 11,866 + -1.0 11,866 + +0.3 11,867 - +0.4 11,883 - -2.7 11,984 + PfGW456L13_7 0.11 +0.8 11,993 + PfGW456L13_7 0.11 +3.7 11,994 - PfGW456L13_7 0.11 -2.1 12,093 + PfGW456L13_7 0.18 +3.7 12,093 + PfGW456L13_7 0.18 -0.2 12,093 + PfGW456L13_7 0.18 +1.2 12,093 + PfGW456L13_7 0.18 -2.5 12,094 - PfGW456L13_7 0.18 +1.9 12,094 - PfGW456L13_7 0.18 -1.4 12,094 - PfGW456L13_7 0.18 +0.1 12,094 - PfGW456L13_7 0.18 +2.7 12,471 + PfGW456L13_7 0.42 +1.3 12,573 - PfGW456L13_7 0.48 -2.6 12,732 + PfGW456L13_7 0.58 +0.6 12,732 + PfGW456L13_7 0.58 -1.8 13,498 - -0.8 13,855 + PfGW456L13_8 0.42 -1.6 13,855 + PfGW456L13_8 0.42 -1.5 13,855 + PfGW456L13_8 0.42 -0.1 13,855 + PfGW456L13_8 0.42 +0.1 13,855 + PfGW456L13_8 0.42 +1.2 13,855 + PfGW456L13_8 0.42 +0.4 13,856 - PfGW456L13_8 0.42 +0.1 13,856 - PfGW456L13_8 0.42 +0.7 13,856 - PfGW456L13_8 0.42 +0.3 13,856 - PfGW456L13_8 0.42 -1.4 13,856 - PfGW456L13_8 0.42 +1.1 13,856 - PfGW456L13_8 0.42 +3.4 13,999 + PfGW456L13_8 0.55 +0.8 13,999 + PfGW456L13_8 0.55 -0.6 13,999 + PfGW456L13_8 0.55 +1.5 14,317 + PfGW456L13_8 0.83 +0.9 14,317 + PfGW456L13_8 0.83 +1.2 14,317 + PfGW456L13_8 0.83 +0.8 14,317 + PfGW456L13_8 0.83 -2.6 14,317 + PfGW456L13_8 0.83 -2.6 14,317 + PfGW456L13_8 0.83 +2.4 14,318 - PfGW456L13_8 0.84 -1.4 14,318 - PfGW456L13_8 0.84 +1.0
Or see this region's nucleotide sequence