Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_578 and PfGW456L13_579 are separated by 54 nucleotides PfGW456L13_579 and PfGW456L13_580 are separated by 105 nucleotides PfGW456L13_580 and PfGW456L13_581 are separated by 328 nucleotides PfGW456L13_581 and PfGW456L13_582 overlap by 23 nucleotides PfGW456L13_582 and PfGW456L13_583 are separated by 71 nucleotides PfGW456L13_583 and PfGW456L13_584 are separated by 437 nucleotides
PfGW456L13_578 - Glutamate-aspartate carrier protein, at 672,348 to 673,679
_578
PfGW456L13_579 - hypothetical protein, at 673,734 to 673,859
_579
PfGW456L13_580 - hypothetical protein, at 673,965 to 674,096
_580
PfGW456L13_581 - hypothetical protein, at 674,425 to 674,538
_581
PfGW456L13_582 - probable exported protein YPO0432, at 674,516 to 674,680
_582
PfGW456L13_583 - FIG00956005: hypothetical protein, at 674,752 to 675,039
_583
PfGW456L13_584 - alginate biosynthesis transcriptional regulatory protein AlgB, at 675,477 to 676,823
_584
Position (kb) 674
675 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 673.541 kb on + strand, within PfGW456L13_578 at 673.630 kb on - strand at 673.661 kb on + strand at 673.661 kb on + strand at 673.679 kb on + strand at 673.680 kb on - strand at 673.680 kb on - strand at 673.680 kb on - strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.767 kb on - strand, within PfGW456L13_579 at 673.767 kb on - strand, within PfGW456L13_579 at 673.767 kb on - strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.825 kb on - strand, within PfGW456L13_579 at 673.825 kb on - strand, within PfGW456L13_579 at 673.849 kb on + strand at 673.850 kb on - strand at 673.865 kb on + strand at 673.865 kb on + strand at 673.926 kb on + strand at 673.926 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.982 kb on + strand, within PfGW456L13_580 at 674.075 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.118 kb on + strand at 674.118 kb on + strand at 674.118 kb on + strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.168 kb on - strand at 674.269 kb on + strand at 674.269 kb on + strand at 674.269 kb on + strand at 674.270 kb on - strand at 674.270 kb on - strand at 674.270 kb on - strand at 674.270 kb on - strand at 674.284 kb on + strand at 674.284 kb on + strand at 674.284 kb on + strand at 674.285 kb on - strand at 674.285 kb on - strand at 674.285 kb on - strand at 674.361 kb on + strand at 674.361 kb on + strand at 674.361 kb on + strand at 674.361 kb on + strand at 674.361 kb on + strand at 674.362 kb on - strand at 674.388 kb on + strand at 674.402 kb on + strand at 674.403 kb on - strand at 674.514 kb on + strand, within PfGW456L13_581 at 674.515 kb on - strand, within PfGW456L13_581 at 674.615 kb on - strand, within PfGW456L13_582 at 674.630 kb on + strand, within PfGW456L13_582 at 674.693 kb on + strand at 674.693 kb on + strand at 674.754 kb on - strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 675.300 kb on - strand at 675.300 kb on - strand at 675.335 kb on + strand at 675.335 kb on + strand at 675.335 kb on + strand at 675.336 kb on - strand at 675.336 kb on - strand at 675.336 kb on - strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.381 kb on + strand at 675.381 kb on + strand at 675.382 kb on - strand at 675.382 kb on - strand at 675.443 kb on + strand at 675.443 kb on + strand at 675.444 kb on - strand at 675.448 kb on - strand at 675.461 kb on + strand at 675.462 kb on - strand at 675.470 kb on + strand at 675.542 kb on + strand at 675.542 kb on + strand at 675.542 kb on + strand at 675.542 kb on + strand at 675.543 kb on - strand at 675.573 kb on + strand at 675.573 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 673,541 + PfGW456L13_578 0.90 +2.2 673,630 - -2.3 673,661 + -2.1 673,661 + -1.6 673,679 + +0.9 673,680 - -3.3 673,680 - -2.2 673,680 - +0.5 673,691 + +0.1 673,691 + -2.6 673,691 + -1.4 673,691 + +0.4 673,691 + -0.9 673,691 + +0.1 673,691 + +3.7 673,691 + -2.6 673,691 + -2.2 673,691 + +1.2 673,691 + +2.0 673,691 + +2.1 673,692 - +1.9 673,692 - +1.8 673,692 - -0.2 673,692 - -1.1 673,692 - +2.8 673,692 - -1.7 673,692 - +1.6 673,692 - +0.8 673,692 - +0.2 673,692 - -1.8 673,767 - PfGW456L13_579 0.26 +0.5 673,767 - PfGW456L13_579 0.26 -1.1 673,767 - PfGW456L13_579 0.26 +1.3 673,768 + PfGW456L13_579 0.27 +1.0 673,768 + PfGW456L13_579 0.27 +1.4 673,768 + PfGW456L13_579 0.27 -1.4 673,768 + PfGW456L13_579 0.27 +1.2 673,768 + PfGW456L13_579 0.27 +3.5 673,768 + PfGW456L13_579 0.27 -0.4 673,769 - PfGW456L13_579 0.28 +1.7 673,769 - PfGW456L13_579 0.28 -1.9 673,769 - PfGW456L13_579 0.28 -2.1 673,769 - PfGW456L13_579 0.28 +0.7 673,769 - PfGW456L13_579 0.28 -0.1 673,769 - PfGW456L13_579 0.28 +0.5 673,769 - PfGW456L13_579 0.28 +1.8 673,769 - PfGW456L13_579 0.28 +0.1 673,769 - PfGW456L13_579 0.28 -0.1 673,825 - PfGW456L13_579 0.72 +0.8 673,825 - PfGW456L13_579 0.72 +0.2 673,849 + -3.1 673,850 - -1.1 673,865 + -3.0 673,865 + -2.9 673,926 + +0.0 673,926 + -0.1 673,945 + +2.2 673,945 + +2.2 673,945 + +2.5 673,945 + -1.1 673,945 + +3.4 673,945 + +3.0 673,945 + -3.9 673,946 - +0.7 673,946 - -2.2 673,946 - +0.1 673,946 - +0.6 673,946 - +0.2 673,946 - -1.4 673,946 - +1.2 673,982 + PfGW456L13_580 0.13 +1.4 674,075 + PfGW456L13_580 0.83 -2.3 674,077 + PfGW456L13_580 0.85 -0.1 674,077 + PfGW456L13_580 0.85 +1.9 674,077 + PfGW456L13_580 0.85 -0.4 674,077 + PfGW456L13_580 0.85 -1.0 674,077 + PfGW456L13_580 0.85 -4.1 674,077 + PfGW456L13_580 0.85 -2.2 674,077 + PfGW456L13_580 0.85 -0.7 674,077 + PfGW456L13_580 0.85 +2.1 674,077 + PfGW456L13_580 0.85 +1.1 674,077 + PfGW456L13_580 0.85 -1.4 674,078 - PfGW456L13_580 0.86 -0.5 674,078 - PfGW456L13_580 0.86 -0.0 674,078 - PfGW456L13_580 0.86 +1.8 674,078 - PfGW456L13_580 0.86 +0.8 674,078 - PfGW456L13_580 0.86 +0.4 674,078 - PfGW456L13_580 0.86 -2.8 674,078 - PfGW456L13_580 0.86 -0.9 674,078 - PfGW456L13_580 0.86 +2.8 674,118 + +0.5 674,118 + +2.9 674,118 + +1.9 674,119 - +0.4 674,119 - +2.0 674,119 - -0.9 674,119 - +2.7 674,119 - -0.3 674,168 - +1.0 674,269 + +2.2 674,269 + -1.2 674,269 + -0.2 674,270 - -2.0 674,270 - -3.1 674,270 - +1.5 674,270 - -0.2 674,284 + -3.8 674,284 + +3.5 674,284 + +0.7 674,285 - +2.7 674,285 - +1.1 674,285 - -0.1 674,361 + -1.4 674,361 + -1.4 674,361 + +2.0 674,361 + +2.1 674,361 + +2.1 674,362 - -0.9 674,388 + +0.8 674,402 + -0.4 674,403 - +0.7 674,514 + PfGW456L13_581 0.78 -1.0 674,515 - PfGW456L13_581 0.79 +1.3 674,615 - PfGW456L13_582 0.60 -0.9 674,630 + PfGW456L13_582 0.69 -2.6 674,693 + +0.9 674,693 + +0.6 674,754 - -2.6 674,779 + +0.8 674,779 + -1.0 674,779 + +0.0 674,779 + -1.8 674,779 + +1.5 674,779 + +1.9 674,779 + -4.2 674,779 + -3.9 674,780 - -2.5 674,780 - +1.5 674,780 - +1.5 674,780 - -2.3 674,780 - -2.2 674,780 - +1.9 674,780 - -4.2 674,780 - -2.4 674,780 - +1.3 674,780 - +0.5 675,300 - -0.9 675,300 - -2.7 675,335 + +1.4 675,335 + +1.7 675,335 + +2.7 675,336 - -0.9 675,336 - +1.5 675,336 - +2.2 675,365 + +1.4 675,365 + +1.9 675,365 + -1.7 675,365 + -0.7 675,365 + -0.0 675,366 - +0.9 675,366 - +1.5 675,366 - -1.8 675,366 - -0.4 675,366 - -2.1 675,366 - -0.0 675,366 - +0.8 675,366 - +0.2 675,381 + +0.1 675,381 + +1.7 675,382 - +1.3 675,382 - +1.1 675,443 + +1.0 675,443 + +1.9 675,444 - -2.6 675,448 - -2.1 675,461 + +2.4 675,462 - -1.5 675,470 + +1.2 675,542 + +0.1 675,542 + -1.3 675,542 + +1.0 675,542 + +0.5 675,543 - -2.8 675,573 + -0.1 675,573 + +1.2
Or see this region's nucleotide sequence