Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_567 and PfGW456L13_568 overlap by 4 nucleotides PfGW456L13_568 and PfGW456L13_569 are separated by 157 nucleotides PfGW456L13_569 and PfGW456L13_570 are separated by 172 nucleotides PfGW456L13_570 and PfGW456L13_571 are separated by 66 nucleotides
PfGW456L13_567 - Glycine cleavage system transcriptional activator, at 664,821 to 665,714
_567
PfGW456L13_568 - FIG00953718: hypothetical protein, at 665,711 to 666,034
_568
PfGW456L13_569 - Dodecin (COG3360) Flavin-binding, at 666,192 to 666,407
_569
PfGW456L13_570 - FIG00955481: hypothetical protein, at 666,580 to 666,750
_570
PfGW456L13_571 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 666,817 to 667,818
_571
Position (kb) 665
666
667 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 664.730 kb on + strand at 664.739 kb on - strand at 664.739 kb on - strand at 664.753 kb on + strand at 664.949 kb on - strand, within PfGW456L13_567 at 664.969 kb on + strand, within PfGW456L13_567 at 664.970 kb on - strand, within PfGW456L13_567 at 665.147 kb on + strand, within PfGW456L13_567 at 665.148 kb on - strand, within PfGW456L13_567 at 665.257 kb on + strand, within PfGW456L13_567 at 665.257 kb on + strand, within PfGW456L13_567 at 665.258 kb on - strand, within PfGW456L13_567 at 665.258 kb on - strand, within PfGW456L13_567 at 665.315 kb on + strand, within PfGW456L13_567 at 665.350 kb on - strand, within PfGW456L13_567 at 665.475 kb on + strand, within PfGW456L13_567 at 665.475 kb on + strand, within PfGW456L13_567 at 665.475 kb on + strand, within PfGW456L13_567 at 665.476 kb on - strand, within PfGW456L13_567 at 665.476 kb on - strand, within PfGW456L13_567 at 665.476 kb on - strand, within PfGW456L13_567 at 665.476 kb on - strand, within PfGW456L13_567 at 665.476 kb on - strand, within PfGW456L13_567 at 665.476 kb on - strand, within PfGW456L13_567 at 665.499 kb on + strand, within PfGW456L13_567 at 665.499 kb on + strand, within PfGW456L13_567 at 665.500 kb on - strand, within PfGW456L13_567 at 665.500 kb on - strand, within PfGW456L13_567 at 665.502 kb on + strand, within PfGW456L13_567 at 665.502 kb on + strand, within PfGW456L13_567 at 665.503 kb on - strand, within PfGW456L13_567 at 665.503 kb on - strand, within PfGW456L13_567 at 665.713 kb on - strand at 665.733 kb on + strand at 665.733 kb on + strand at 665.734 kb on - strand at 665.734 kb on - strand at 665.734 kb on - strand at 665.750 kb on + strand, within PfGW456L13_568 at 665.751 kb on - strand, within PfGW456L13_568 at 665.799 kb on + strand, within PfGW456L13_568 at 665.800 kb on - strand, within PfGW456L13_568 at 665.800 kb on - strand, within PfGW456L13_568 at 665.850 kb on + strand, within PfGW456L13_568 at 666.160 kb on + strand at 666.160 kb on + strand at 666.160 kb on + strand at 666.160 kb on + strand at 666.160 kb on + strand at 666.160 kb on + strand at 666.160 kb on + strand at 666.160 kb on + strand at 666.161 kb on - strand at 666.161 kb on - strand at 666.161 kb on - strand at 666.161 kb on - strand at 666.161 kb on - strand at 666.161 kb on - strand at 666.167 kb on + strand at 666.210 kb on + strand at 666.210 kb on + strand at 666.210 kb on + strand at 666.210 kb on + strand at 666.210 kb on + strand at 666.210 kb on + strand at 666.210 kb on + strand at 666.211 kb on - strand at 666.211 kb on - strand at 666.211 kb on - strand at 666.211 kb on - strand at 666.300 kb on + strand, within PfGW456L13_569 at 666.300 kb on + strand, within PfGW456L13_569 at 666.300 kb on + strand, within PfGW456L13_569 at 666.300 kb on + strand, within PfGW456L13_569 at 666.300 kb on + strand, within PfGW456L13_569 at 666.300 kb on + strand, within PfGW456L13_569 at 666.300 kb on + strand, within PfGW456L13_569 at 666.301 kb on - strand, within PfGW456L13_569 at 666.301 kb on - strand, within PfGW456L13_569 at 666.301 kb on - strand, within PfGW456L13_569 at 666.301 kb on - strand, within PfGW456L13_569 at 666.301 kb on - strand, within PfGW456L13_569 at 666.301 kb on - strand, within PfGW456L13_569 at 666.301 kb on - strand, within PfGW456L13_569 at 666.301 kb on - strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.340 kb on + strand, within PfGW456L13_569 at 666.341 kb on - strand, within PfGW456L13_569 at 666.341 kb on - strand, within PfGW456L13_569 at 666.341 kb on - strand, within PfGW456L13_569 at 666.341 kb on - strand, within PfGW456L13_569 at 666.341 kb on - strand, within PfGW456L13_569 at 666.341 kb on - strand, within PfGW456L13_569 at 666.416 kb on + strand at 666.450 kb on + strand at 666.468 kb on + strand at 666.468 kb on + strand at 666.468 kb on + strand at 666.468 kb on + strand at 666.468 kb on + strand at 666.468 kb on + strand at 666.468 kb on + strand at 666.468 kb on + strand at 666.469 kb on - strand at 666.469 kb on - strand at 666.469 kb on - strand at 666.469 kb on - strand at 666.469 kb on - strand at 666.469 kb on - strand at 666.469 kb on - strand at 666.469 kb on - strand at 666.469 kb on - strand at 666.503 kb on + strand at 666.503 kb on + strand at 666.540 kb on + strand at 666.540 kb on + strand at 666.541 kb on - strand at 666.541 kb on - strand at 666.552 kb on - strand at 666.739 kb on + strand at 666.739 kb on + strand at 666.742 kb on - strand at 666.749 kb on - strand at 666.849 kb on - strand at 666.876 kb on - strand at 666.876 kb on - strand at 666.876 kb on - strand at 666.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 664,730 + -1.4 664,739 - +2.1 664,739 - +0.7 664,753 + -2.6 664,949 - PfGW456L13_567 0.14 -0.4 664,969 + PfGW456L13_567 0.17 -0.1 664,970 - PfGW456L13_567 0.17 -1.9 665,147 + PfGW456L13_567 0.36 +1.5 665,148 - PfGW456L13_567 0.37 -0.9 665,257 + PfGW456L13_567 0.49 +1.4 665,257 + PfGW456L13_567 0.49 +0.7 665,258 - PfGW456L13_567 0.49 +1.7 665,258 - PfGW456L13_567 0.49 +0.7 665,315 + PfGW456L13_567 0.55 +2.1 665,350 - PfGW456L13_567 0.59 +0.8 665,475 + PfGW456L13_567 0.73 -2.7 665,475 + PfGW456L13_567 0.73 +3.1 665,475 + PfGW456L13_567 0.73 -0.8 665,476 - PfGW456L13_567 0.73 +1.8 665,476 - PfGW456L13_567 0.73 -0.9 665,476 - PfGW456L13_567 0.73 +1.2 665,476 - PfGW456L13_567 0.73 +0.1 665,476 - PfGW456L13_567 0.73 -0.5 665,476 - PfGW456L13_567 0.73 -0.2 665,499 + PfGW456L13_567 0.76 -4.8 665,499 + PfGW456L13_567 0.76 +2.6 665,500 - PfGW456L13_567 0.76 +1.7 665,500 - PfGW456L13_567 0.76 -0.5 665,502 + PfGW456L13_567 0.76 +0.4 665,502 + PfGW456L13_567 0.76 +1.7 665,503 - PfGW456L13_567 0.76 -2.4 665,503 - PfGW456L13_567 0.76 +1.9 665,713 - -2.5 665,733 + +1.1 665,733 + +0.4 665,734 - -2.7 665,734 - +0.4 665,734 - -2.6 665,750 + PfGW456L13_568 0.12 -1.9 665,751 - PfGW456L13_568 0.12 -0.2 665,799 + PfGW456L13_568 0.27 -1.9 665,800 - PfGW456L13_568 0.27 +0.1 665,800 - PfGW456L13_568 0.27 -3.2 665,850 + PfGW456L13_568 0.43 -3.4 666,160 + -2.9 666,160 + -1.8 666,160 + +0.9 666,160 + -0.6 666,160 + -3.5 666,160 + -0.4 666,160 + -0.1 666,160 + -2.0 666,161 - +2.6 666,161 - -3.9 666,161 - +1.1 666,161 - -1.0 666,161 - -1.1 666,161 - -0.2 666,167 + -1.3 666,210 + +2.4 666,210 + +1.7 666,210 + -2.2 666,210 + -0.0 666,210 + -0.2 666,210 + -2.3 666,210 + -1.2 666,211 - -0.1 666,211 - +0.9 666,211 - -3.5 666,211 - -0.0 666,300 + PfGW456L13_569 0.50 -3.6 666,300 + PfGW456L13_569 0.50 +0.5 666,300 + PfGW456L13_569 0.50 -1.6 666,300 + PfGW456L13_569 0.50 -0.4 666,300 + PfGW456L13_569 0.50 +0.9 666,300 + PfGW456L13_569 0.50 -0.8 666,300 + PfGW456L13_569 0.50 +0.8 666,301 - PfGW456L13_569 0.50 -0.9 666,301 - PfGW456L13_569 0.50 +0.9 666,301 - PfGW456L13_569 0.50 -2.2 666,301 - PfGW456L13_569 0.50 -2.4 666,301 - PfGW456L13_569 0.50 -2.1 666,301 - PfGW456L13_569 0.50 -4.5 666,301 - PfGW456L13_569 0.50 -3.6 666,301 - PfGW456L13_569 0.50 +2.9 666,340 + PfGW456L13_569 0.69 +1.1 666,340 + PfGW456L13_569 0.69 +1.7 666,340 + PfGW456L13_569 0.69 -0.3 666,340 + PfGW456L13_569 0.69 -0.1 666,340 + PfGW456L13_569 0.69 +0.9 666,340 + PfGW456L13_569 0.69 -0.7 666,340 + PfGW456L13_569 0.69 +0.1 666,340 + PfGW456L13_569 0.69 -0.4 666,340 + PfGW456L13_569 0.69 -0.1 666,340 + PfGW456L13_569 0.69 +1.1 666,341 - PfGW456L13_569 0.69 +1.1 666,341 - PfGW456L13_569 0.69 -0.9 666,341 - PfGW456L13_569 0.69 -2.4 666,341 - PfGW456L13_569 0.69 -1.8 666,341 - PfGW456L13_569 0.69 -2.1 666,341 - PfGW456L13_569 0.69 -0.6 666,416 + +1.7 666,450 + +1.4 666,468 + +1.7 666,468 + -3.2 666,468 + -3.0 666,468 + +1.1 666,468 + +1.5 666,468 + -1.7 666,468 + -0.2 666,468 + -0.3 666,469 - +0.3 666,469 - -2.1 666,469 - -2.6 666,469 - -0.2 666,469 - +3.5 666,469 - -0.4 666,469 - -2.1 666,469 - -3.0 666,469 - +3.1 666,503 + +1.2 666,503 + -1.9 666,540 + +3.5 666,540 + +0.8 666,541 - +1.9 666,541 - +1.9 666,552 - -1.2 666,739 + -2.2 666,739 + +1.5 666,742 - -1.5 666,749 - +2.1 666,849 - +0.4 666,876 - -0.2 666,876 - -0.6 666,876 - -3.6 666,876 - +1.2
Or see this region's nucleotide sequence