Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_533

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_532 and PfGW456L13_533 are separated by 371 nucleotidesPfGW456L13_533 and PfGW456L13_534 overlap by 11 nucleotides PfGW456L13_532 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 613,288 to 614,175 _532 PfGW456L13_533 - Type I secretion system, membrane fusion protein LapC, at 614,547 to 615,911 _533 PfGW456L13_534 - Type I secretion system ATPase, LssB family LapB, at 615,901 to 618,057 _534 Position (kb) 614 615 616Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 613.661 kb on + strand, within PfGW456L13_532at 613.661 kb on + strand, within PfGW456L13_532at 613.814 kb on + strand, within PfGW456L13_532at 613.815 kb on - strand, within PfGW456L13_532at 614.043 kb on + strand, within PfGW456L13_532at 614.044 kb on - strand, within PfGW456L13_532at 614.175 kb on + strandat 614.175 kb on + strandat 614.175 kb on + strandat 614.175 kb on + strandat 614.176 kb on - strandat 614.176 kb on - strandat 614.176 kb on - strandat 614.281 kb on + strandat 614.356 kb on + strandat 614.386 kb on + strandat 614.386 kb on + strandat 614.386 kb on + strandat 614.387 kb on - strandat 614.387 kb on - strandat 614.387 kb on - strandat 614.387 kb on - strandat 614.549 kb on - strandat 614.599 kb on + strandat 614.599 kb on + strandat 614.599 kb on + strandat 614.600 kb on - strandat 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.719 kb on + strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.720 kb on - strand, within PfGW456L13_533at 614.722 kb on + strand, within PfGW456L13_533at 614.722 kb on + strand, within PfGW456L13_533at 614.722 kb on + strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.723 kb on - strand, within PfGW456L13_533at 614.794 kb on + strand, within PfGW456L13_533at 614.794 kb on + strand, within PfGW456L13_533at 614.795 kb on - strand, within PfGW456L13_533at 614.795 kb on - strand, within PfGW456L13_533at 614.795 kb on - strand, within PfGW456L13_533at 614.803 kb on + strand, within PfGW456L13_533at 614.803 kb on + strand, within PfGW456L13_533at 614.803 kb on + strand, within PfGW456L13_533at 614.804 kb on - strand, within PfGW456L13_533at 614.804 kb on - strand, within PfGW456L13_533at 614.804 kb on - strand, within PfGW456L13_533at 614.804 kb on - strand, within PfGW456L13_533at 614.804 kb on - strand, within PfGW456L13_533at 614.804 kb on - strand, within PfGW456L13_533at 614.804 kb on - strand, within PfGW456L13_533at 614.809 kb on + strand, within PfGW456L13_533at 614.810 kb on - strand, within PfGW456L13_533at 614.810 kb on - strand, within PfGW456L13_533at 614.816 kb on + strand, within PfGW456L13_533at 614.954 kb on + strand, within PfGW456L13_533at 614.954 kb on + strand, within PfGW456L13_533at 614.955 kb on - strand, within PfGW456L13_533at 615.413 kb on + strand, within PfGW456L13_533at 615.413 kb on + strand, within PfGW456L13_533at 615.413 kb on + strand, within PfGW456L13_533at 615.413 kb on + strand, within PfGW456L13_533at 615.413 kb on + strand, within PfGW456L13_533at 615.414 kb on - strand, within PfGW456L13_533at 615.415 kb on + strand, within PfGW456L13_533at 615.415 kb on + strand, within PfGW456L13_533at 615.415 kb on + strand, within PfGW456L13_533at 615.415 kb on + strand, within PfGW456L13_533at 615.416 kb on - strand, within PfGW456L13_533at 615.416 kb on - strand, within PfGW456L13_533at 615.416 kb on - strand, within PfGW456L13_533at 615.416 kb on - strand, within PfGW456L13_533at 615.416 kb on - strand, within PfGW456L13_533at 615.416 kb on - strand, within PfGW456L13_533at 615.647 kb on + strand, within PfGW456L13_533at 615.894 kb on - strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.902 kb on + strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.903 kb on - strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.967 kb on + strandat 615.968 kb on - strandat 615.968 kb on - strandat 615.968 kb on - strandat 616.150 kb on + strand, within PfGW456L13_534at 616.151 kb on - strand, within PfGW456L13_534at 616.151 kb on - strand, within PfGW456L13_534at 616.226 kb on + strand, within PfGW456L13_534at 616.227 kb on - strand, within PfGW456L13_534at 616.250 kb on + strand, within PfGW456L13_534at 616.250 kb on + strand, within PfGW456L13_534at 616.250 kb on + strand, within PfGW456L13_534at 616.251 kb on - strand, within PfGW456L13_534at 616.304 kb on + strand, within PfGW456L13_534at 616.304 kb on + strand, within PfGW456L13_534at 616.304 kb on + strand, within PfGW456L13_534at 616.305 kb on - strand, within PfGW456L13_534at 616.371 kb on - strand, within PfGW456L13_534at 616.371 kb on - strand, within PfGW456L13_534at 616.382 kb on + strand, within PfGW456L13_534at 616.382 kb on + strand, within PfGW456L13_534at 616.383 kb on - strand, within PfGW456L13_534at 616.383 kb on - strand, within PfGW456L13_534at 616.383 kb on - strand, within PfGW456L13_534at 616.454 kb on + strand, within PfGW456L13_534at 616.455 kb on - strand, within PfGW456L13_534at 616.775 kb on + strand, within PfGW456L13_534at 616.775 kb on + strand, within PfGW456L13_534at 616.775 kb on + strand, within PfGW456L13_534at 616.775 kb on + strand, within PfGW456L13_534at 616.775 kb on + strand, within PfGW456L13_534at 616.775 kb on + strand, within PfGW456L13_534at 616.775 kb on + strand, within PfGW456L13_534at 616.776 kb on - strand, within PfGW456L13_534at 616.776 kb on - strand, within PfGW456L13_534at 616.776 kb on - strand, within PfGW456L13_534at 616.776 kb on - strand, within PfGW456L13_534at 616.776 kb on - strand, within PfGW456L13_534at 616.776 kb on - strand, within PfGW456L13_534at 616.824 kb on - strand, within PfGW456L13_534at 616.878 kb on + strand, within PfGW456L13_534at 616.879 kb on - strand, within PfGW456L13_534at 616.879 kb on - strand, within PfGW456L13_534

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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613,661 + PfGW456L13_532 0.42 -2.0
613,661 + PfGW456L13_532 0.42 +2.2
613,814 + PfGW456L13_532 0.59 -0.8
613,815 - PfGW456L13_532 0.59 -0.6
614,043 + PfGW456L13_532 0.85 -0.2
614,044 - PfGW456L13_532 0.85 +1.0
614,175 + +3.8
614,175 + -2.7
614,175 + -1.2
614,175 + -0.2
614,176 - +0.6
614,176 - +2.0
614,176 - +1.1
614,281 + +1.1
614,356 + -0.6
614,386 + +1.9
614,386 + -2.4
614,386 + +0.5
614,387 - +1.7
614,387 - -0.4
614,387 - +1.5
614,387 - +1.4
614,549 - -0.1
614,599 + -0.4
614,599 + +2.6
614,599 + +0.1
614,600 - +2.2
614,719 + PfGW456L13_533 0.13 -0.8
614,719 + PfGW456L13_533 0.13 +1.2
614,719 + PfGW456L13_533 0.13 +2.8
614,719 + PfGW456L13_533 0.13 +1.6
614,719 + PfGW456L13_533 0.13 -0.2
614,719 + PfGW456L13_533 0.13 +2.0
614,719 + PfGW456L13_533 0.13 -0.8
614,719 + PfGW456L13_533 0.13 +1.8
614,719 + PfGW456L13_533 0.13 +2.9
614,719 + PfGW456L13_533 0.13 +2.3
614,719 + PfGW456L13_533 0.13 +0.4
614,719 + PfGW456L13_533 0.13 +0.2
614,719 + PfGW456L13_533 0.13 +1.7
614,719 + PfGW456L13_533 0.13 +1.2
614,719 + PfGW456L13_533 0.13 -0.9
614,719 + PfGW456L13_533 0.13 +0.2
614,719 + PfGW456L13_533 0.13 -1.7
614,719 + PfGW456L13_533 0.13 +2.4
614,719 + PfGW456L13_533 0.13 +0.7
614,720 - PfGW456L13_533 0.13 -0.7
614,720 - PfGW456L13_533 0.13 +1.3
614,720 - PfGW456L13_533 0.13 +2.8
614,720 - PfGW456L13_533 0.13 -0.5
614,720 - PfGW456L13_533 0.13 -0.6
614,720 - PfGW456L13_533 0.13 -2.7
614,720 - PfGW456L13_533 0.13 -1.9
614,720 - PfGW456L13_533 0.13 +1.9
614,720 - PfGW456L13_533 0.13 -3.0
614,720 - PfGW456L13_533 0.13 +1.7
614,720 - PfGW456L13_533 0.13 -1.5
614,720 - PfGW456L13_533 0.13 -1.5
614,720 - PfGW456L13_533 0.13 +1.5
614,720 - PfGW456L13_533 0.13 +2.4
614,720 - PfGW456L13_533 0.13 +1.9
614,720 - PfGW456L13_533 0.13 -3.1
614,720 - PfGW456L13_533 0.13 -3.1
614,722 + PfGW456L13_533 0.13 +0.7
614,722 + PfGW456L13_533 0.13 +1.5
614,722 + PfGW456L13_533 0.13 +1.4
614,723 - PfGW456L13_533 0.13 -3.0
614,723 - PfGW456L13_533 0.13 +1.3
614,723 - PfGW456L13_533 0.13 +0.6
614,723 - PfGW456L13_533 0.13 +0.4
614,723 - PfGW456L13_533 0.13 +0.1
614,723 - PfGW456L13_533 0.13 +2.0
614,723 - PfGW456L13_533 0.13 -2.0
614,723 - PfGW456L13_533 0.13 +2.1
614,723 - PfGW456L13_533 0.13 +1.6
614,723 - PfGW456L13_533 0.13 +1.6
614,723 - PfGW456L13_533 0.13 +0.7
614,723 - PfGW456L13_533 0.13 +1.6
614,723 - PfGW456L13_533 0.13 +1.6
614,794 + PfGW456L13_533 0.18 +0.4
614,794 + PfGW456L13_533 0.18 +0.9
614,795 - PfGW456L13_533 0.18 +0.7
614,795 - PfGW456L13_533 0.18 +2.3
614,795 - PfGW456L13_533 0.18 +0.4
614,803 + PfGW456L13_533 0.19 -0.9
614,803 + PfGW456L13_533 0.19 -0.2
614,803 + PfGW456L13_533 0.19 +3.5
614,804 - PfGW456L13_533 0.19 -0.8
614,804 - PfGW456L13_533 0.19 +1.8
614,804 - PfGW456L13_533 0.19 +2.3
614,804 - PfGW456L13_533 0.19 +3.0
614,804 - PfGW456L13_533 0.19 +2.0
614,804 - PfGW456L13_533 0.19 -2.4
614,804 - PfGW456L13_533 0.19 +1.4
614,809 + PfGW456L13_533 0.19 +1.0
614,810 - PfGW456L13_533 0.19 +2.1
614,810 - PfGW456L13_533 0.19 +1.5
614,816 + PfGW456L13_533 0.20 +1.4
614,954 + PfGW456L13_533 0.30 +1.5
614,954 + PfGW456L13_533 0.30 +1.2
614,955 - PfGW456L13_533 0.30 -1.9
615,413 + PfGW456L13_533 0.63 +2.2
615,413 + PfGW456L13_533 0.63 +3.9
615,413 + PfGW456L13_533 0.63 -1.5
615,413 + PfGW456L13_533 0.63 +3.1
615,413 + PfGW456L13_533 0.63 -1.8
615,414 - PfGW456L13_533 0.64 +0.7
615,415 + PfGW456L13_533 0.64 +1.8
615,415 + PfGW456L13_533 0.64 +2.1
615,415 + PfGW456L13_533 0.64 -0.1
615,415 + PfGW456L13_533 0.64 +1.8
615,416 - PfGW456L13_533 0.64 +2.1
615,416 - PfGW456L13_533 0.64 -1.0
615,416 - PfGW456L13_533 0.64 -1.4
615,416 - PfGW456L13_533 0.64 -3.3
615,416 - PfGW456L13_533 0.64 -0.6
615,416 - PfGW456L13_533 0.64 +0.8
615,647 + PfGW456L13_533 0.81 +1.0
615,894 - -2.1
615,902 + -1.2
615,902 + +0.0
615,902 + -2.9
615,902 + +1.3
615,902 + -3.4
615,902 + -2.4
615,902 + +0.9
615,902 + +0.6
615,902 + +0.2
615,902 + -2.8
615,902 + +2.4
615,902 + -3.8
615,902 + -1.6
615,902 + -2.2
615,902 + -1.9
615,903 - -0.2
615,903 - -1.9
615,903 - +0.8
615,903 - -3.1
615,903 - -1.0
615,903 - +1.5
615,903 - +0.8
615,903 - +2.2
615,903 - +1.6
615,903 - +2.0
615,903 - -0.0
615,903 - -2.4
615,903 - -2.3
615,967 + -1.4
615,967 + +1.3
615,967 + -2.2
615,967 + -1.4
615,968 - +0.8
615,968 - -0.1
615,968 - -0.6
616,150 + PfGW456L13_534 0.12 -0.1
616,151 - PfGW456L13_534 0.12 +0.9
616,151 - PfGW456L13_534 0.12 -2.1
616,226 + PfGW456L13_534 0.15 -0.0
616,227 - PfGW456L13_534 0.15 -1.7
616,250 + PfGW456L13_534 0.16 -1.7
616,250 + PfGW456L13_534 0.16 +2.7
616,250 + PfGW456L13_534 0.16 -1.6
616,251 - PfGW456L13_534 0.16 +2.9
616,304 + PfGW456L13_534 0.19 +1.8
616,304 + PfGW456L13_534 0.19 +1.3
616,304 + PfGW456L13_534 0.19 -2.8
616,305 - PfGW456L13_534 0.19 +1.0
616,371 - PfGW456L13_534 0.22 -0.8
616,371 - PfGW456L13_534 0.22 +1.0
616,382 + PfGW456L13_534 0.22 -1.0
616,382 + PfGW456L13_534 0.22 +1.4
616,383 - PfGW456L13_534 0.22 +1.4
616,383 - PfGW456L13_534 0.22 +1.4
616,383 - PfGW456L13_534 0.22 -3.6
616,454 + PfGW456L13_534 0.26 +1.7
616,455 - PfGW456L13_534 0.26 -2.9
616,775 + PfGW456L13_534 0.41 -1.4
616,775 + PfGW456L13_534 0.41 -2.7
616,775 + PfGW456L13_534 0.41 -3.4
616,775 + PfGW456L13_534 0.41 +1.2
616,775 + PfGW456L13_534 0.41 +1.1
616,775 + PfGW456L13_534 0.41 -2.7
616,775 + PfGW456L13_534 0.41 -4.0
616,776 - PfGW456L13_534 0.41 -2.5
616,776 - PfGW456L13_534 0.41 +0.1
616,776 - PfGW456L13_534 0.41 -1.1
616,776 - PfGW456L13_534 0.41 -0.2
616,776 - PfGW456L13_534 0.41 -2.0
616,776 - PfGW456L13_534 0.41 +2.5
616,824 - PfGW456L13_534 0.43 +0.7
616,878 + PfGW456L13_534 0.45 -0.8
616,879 - PfGW456L13_534 0.45 -2.2
616,879 - PfGW456L13_534 0.45 +2.1

Or see this region's nucleotide sequence