Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4925 and PfGW456L13_4926 are separated by 244 nucleotides PfGW456L13_4926 and PfGW456L13_4927 are separated by 188 nucleotides PfGW456L13_4927 and PfGW456L13_4928 are separated by 48 nucleotides
PfGW456L13_4925 - Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog, at 5,502,610 to 5,503,254
_4925
PfGW456L13_4926 - hypothetical protein, at 5,503,499 to 5,503,879
_4926
PfGW456L13_4927 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 5,504,068 to 5,504,562
_4927
PfGW456L13_4928 - carboxylase, at 5,504,611 to 5,505,867
_4928
Position (kb) 5504
5505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5503.136 kb on - strand, within PfGW456L13_4925 at 5503.230 kb on - strand at 5503.310 kb on + strand at 5503.329 kb on + strand at 5503.329 kb on + strand at 5503.383 kb on + strand at 5503.384 kb on - strand at 5503.385 kb on + strand at 5503.385 kb on + strand at 5503.385 kb on + strand at 5503.386 kb on - strand at 5503.386 kb on - strand at 5503.415 kb on + strand at 5503.564 kb on + strand, within PfGW456L13_4926 at 5503.564 kb on + strand, within PfGW456L13_4926 at 5503.565 kb on - strand, within PfGW456L13_4926 at 5503.565 kb on - strand, within PfGW456L13_4926 at 5503.565 kb on - strand, within PfGW456L13_4926 at 5503.565 kb on - strand, within PfGW456L13_4926 at 5503.565 kb on - strand, within PfGW456L13_4926 at 5503.596 kb on + strand, within PfGW456L13_4926 at 5503.597 kb on - strand, within PfGW456L13_4926 at 5503.600 kb on + strand, within PfGW456L13_4926 at 5503.846 kb on + strand at 5503.951 kb on + strand at 5503.952 kb on - strand at 5504.179 kb on + strand, within PfGW456L13_4927 at 5504.179 kb on + strand, within PfGW456L13_4927 at 5504.179 kb on + strand, within PfGW456L13_4927 at 5504.179 kb on + strand, within PfGW456L13_4927 at 5504.180 kb on - strand, within PfGW456L13_4927 at 5504.180 kb on - strand, within PfGW456L13_4927 at 5504.180 kb on - strand, within PfGW456L13_4927 at 5504.180 kb on - strand, within PfGW456L13_4927 at 5504.252 kb on + strand, within PfGW456L13_4927 at 5504.252 kb on + strand, within PfGW456L13_4927 at 5504.253 kb on - strand, within PfGW456L13_4927 at 5504.253 kb on - strand, within PfGW456L13_4927 at 5504.253 kb on - strand, within PfGW456L13_4927 at 5504.253 kb on - strand, within PfGW456L13_4927 at 5504.435 kb on + strand, within PfGW456L13_4927 at 5504.435 kb on + strand, within PfGW456L13_4927 at 5504.435 kb on + strand, within PfGW456L13_4927 at 5504.435 kb on + strand, within PfGW456L13_4927 at 5504.435 kb on + strand, within PfGW456L13_4927 at 5504.436 kb on - strand, within PfGW456L13_4927 at 5504.436 kb on - strand, within PfGW456L13_4927 at 5504.436 kb on - strand, within PfGW456L13_4927 at 5504.436 kb on - strand, within PfGW456L13_4927 at 5504.436 kb on - strand, within PfGW456L13_4927 at 5504.495 kb on + strand, within PfGW456L13_4927 at 5504.496 kb on - strand, within PfGW456L13_4927 at 5504.585 kb on - strand at 5504.708 kb on + strand at 5504.903 kb on + strand, within PfGW456L13_4928 at 5505.266 kb on + strand, within PfGW456L13_4928 at 5505.266 kb on + strand, within PfGW456L13_4928 at 5505.266 kb on + strand, within PfGW456L13_4928 at 5505.266 kb on + strand, within PfGW456L13_4928 at 5505.266 kb on + strand, within PfGW456L13_4928 at 5505.266 kb on + strand, within PfGW456L13_4928 at 5505.266 kb on + strand, within PfGW456L13_4928
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 5,503,136 - PfGW456L13_4925 0.82 +2.0 5,503,230 - -2.3 5,503,310 + +0.5 5,503,329 + +0.5 5,503,329 + +1.0 5,503,383 + +1.3 5,503,384 - +0.1 5,503,385 + +4.0 5,503,385 + +3.5 5,503,385 + -0.6 5,503,386 - -3.1 5,503,386 - -1.7 5,503,415 + +0.2 5,503,564 + PfGW456L13_4926 0.17 +0.3 5,503,564 + PfGW456L13_4926 0.17 +1.3 5,503,565 - PfGW456L13_4926 0.17 +0.7 5,503,565 - PfGW456L13_4926 0.17 -3.0 5,503,565 - PfGW456L13_4926 0.17 +2.9 5,503,565 - PfGW456L13_4926 0.17 +0.1 5,503,565 - PfGW456L13_4926 0.17 +2.7 5,503,596 + PfGW456L13_4926 0.25 +1.6 5,503,597 - PfGW456L13_4926 0.26 -1.2 5,503,600 + PfGW456L13_4926 0.27 -0.5 5,503,846 + -2.8 5,503,951 + -2.5 5,503,952 - +2.1 5,504,179 + PfGW456L13_4927 0.22 -2.1 5,504,179 + PfGW456L13_4927 0.22 -0.5 5,504,179 + PfGW456L13_4927 0.22 +0.1 5,504,179 + PfGW456L13_4927 0.22 +2.4 5,504,180 - PfGW456L13_4927 0.23 -2.4 5,504,180 - PfGW456L13_4927 0.23 -2.1 5,504,180 - PfGW456L13_4927 0.23 -4.3 5,504,180 - PfGW456L13_4927 0.23 +1.5 5,504,252 + PfGW456L13_4927 0.37 -2.4 5,504,252 + PfGW456L13_4927 0.37 -1.2 5,504,253 - PfGW456L13_4927 0.37 +1.9 5,504,253 - PfGW456L13_4927 0.37 +3.0 5,504,253 - PfGW456L13_4927 0.37 +1.3 5,504,253 - PfGW456L13_4927 0.37 +0.6 5,504,435 + PfGW456L13_4927 0.74 +0.9 5,504,435 + PfGW456L13_4927 0.74 -1.9 5,504,435 + PfGW456L13_4927 0.74 -0.3 5,504,435 + PfGW456L13_4927 0.74 -0.1 5,504,435 + PfGW456L13_4927 0.74 +1.3 5,504,436 - PfGW456L13_4927 0.74 +0.3 5,504,436 - PfGW456L13_4927 0.74 -3.5 5,504,436 - PfGW456L13_4927 0.74 +0.5 5,504,436 - PfGW456L13_4927 0.74 -2.7 5,504,436 - PfGW456L13_4927 0.74 +0.5 5,504,495 + PfGW456L13_4927 0.86 +0.4 5,504,496 - PfGW456L13_4927 0.86 -3.1 5,504,585 - -1.8 5,504,708 + -0.3 5,504,903 + PfGW456L13_4928 0.23 +1.8 5,505,266 + PfGW456L13_4928 0.52 +0.5 5,505,266 + PfGW456L13_4928 0.52 +0.9 5,505,266 + PfGW456L13_4928 0.52 -3.6 5,505,266 + PfGW456L13_4928 0.52 +1.0 5,505,266 + PfGW456L13_4928 0.52 -0.8 5,505,266 + PfGW456L13_4928 0.52 -2.4 5,505,266 + PfGW456L13_4928 0.52 +0.3
Or see this region's nucleotide sequence