Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_483

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_481 and PfGW456L13_482 are separated by 83 nucleotidesPfGW456L13_482 and PfGW456L13_483 are separated by 90 nucleotidesPfGW456L13_483 and PfGW456L13_484 are separated by 3 nucleotidesPfGW456L13_484 and PfGW456L13_485 are separated by 12 nucleotides PfGW456L13_481 - transcriptional regulator, Crp/Fnr family, at 552,626 to 553,312 _481 PfGW456L13_482 - FIG028593: membrane protein, at 553,396 to 553,920 _482 PfGW456L13_483 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 554,011 to 555,000 _483 PfGW456L13_484 - Sulfate transport system permease protein CysW, at 555,004 to 555,873 _484 PfGW456L13_485 - Sulfate transport system permease protein CysT, at 555,886 to 556,704 _485 Position (kb) 554 555 556Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 553.237 kb on + strand, within PfGW456L13_481at 553.307 kb on - strandat 553.323 kb on - strandat 553.381 kb on + strandat 553.381 kb on + strandat 553.382 kb on - strandat 553.426 kb on + strandat 553.426 kb on + strandat 553.426 kb on + strandat 553.426 kb on + strandat 553.426 kb on + strandat 553.588 kb on + strand, within PfGW456L13_482at 553.589 kb on - strand, within PfGW456L13_482at 553.750 kb on + strand, within PfGW456L13_482at 553.751 kb on - strand, within PfGW456L13_482at 553.919 kb on - strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.958 kb on + strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.959 kb on - strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.969 kb on + strandat 553.970 kb on - strandat 553.970 kb on - strandat 553.970 kb on - strandat 553.970 kb on - strandat 553.970 kb on - strandat 553.970 kb on - strandat 553.970 kb on - strandat 553.970 kb on - strandat 554.012 kb on + strandat 554.012 kb on + strandat 554.013 kb on - strandat 554.016 kb on + strandat 554.300 kb on + strand, within PfGW456L13_483at 554.300 kb on + strand, within PfGW456L13_483at 554.301 kb on - strand, within PfGW456L13_483at 554.301 kb on - strand, within PfGW456L13_483at 554.383 kb on - strand, within PfGW456L13_483at 554.982 kb on + strandat 554.982 kb on + strandat 554.982 kb on + strandat 554.982 kb on + strandat 554.983 kb on - strandat 555.005 kb on + strandat 555.006 kb on - strandat 555.128 kb on + strand, within PfGW456L13_484at 555.128 kb on + strand, within PfGW456L13_484at 555.128 kb on + strand, within PfGW456L13_484at 555.129 kb on - strand, within PfGW456L13_484at 555.129 kb on - strand, within PfGW456L13_484at 555.137 kb on + strand, within PfGW456L13_484at 555.137 kb on + strand, within PfGW456L13_484at 555.137 kb on + strand, within PfGW456L13_484at 555.138 kb on - strand, within PfGW456L13_484at 555.251 kb on + strand, within PfGW456L13_484at 555.345 kb on + strand, within PfGW456L13_484at 555.503 kb on + strand, within PfGW456L13_484at 555.503 kb on + strand, within PfGW456L13_484at 555.503 kb on + strand, within PfGW456L13_484at 555.503 kb on + strand, within PfGW456L13_484at 555.503 kb on + strand, within PfGW456L13_484at 555.504 kb on - strand, within PfGW456L13_484at 555.504 kb on - strand, within PfGW456L13_484at 555.504 kb on - strand, within PfGW456L13_484at 555.504 kb on - strand, within PfGW456L13_484at 555.504 kb on - strand, within PfGW456L13_484at 555.585 kb on - strand, within PfGW456L13_484at 555.585 kb on - strand, within PfGW456L13_484at 555.585 kb on - strand, within PfGW456L13_484at 555.958 kb on + strandat 555.959 kb on - strandat 555.989 kb on + strand, within PfGW456L13_485at 555.989 kb on + strand, within PfGW456L13_485at 555.989 kb on + strand, within PfGW456L13_485at 555.990 kb on - strand, within PfGW456L13_485

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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553,237 + PfGW456L13_481 0.89 -0.2
553,307 - -0.9
553,323 - -1.3
553,381 + +0.4
553,381 + +0.1
553,382 - -3.3
553,426 + -3.1
553,426 + -0.6
553,426 + -3.1
553,426 + +2.9
553,426 + +0.8
553,588 + PfGW456L13_482 0.37 +2.2
553,589 - PfGW456L13_482 0.37 -1.1
553,750 + PfGW456L13_482 0.67 -0.5
553,751 - PfGW456L13_482 0.68 -0.7
553,919 - -0.1
553,958 + +0.3
553,958 + -1.7
553,958 + +0.7
553,958 + -3.3
553,958 + -1.1
553,958 + +1.2
553,958 + +0.5
553,958 + -3.3
553,958 + -1.9
553,958 + -1.4
553,958 + -2.8
553,958 + +0.7
553,958 + +2.4
553,959 - -0.1
553,959 - -2.9
553,959 - +3.6
553,959 - +2.0
553,959 - -0.9
553,959 - -1.4
553,959 - -3.1
553,959 - +0.9
553,959 - +0.9
553,959 - -0.3
553,959 - -1.9
553,959 - +0.7
553,969 + +0.0
553,969 + -2.7
553,969 + +0.3
553,969 + -1.3
553,969 + -2.0
553,969 + +0.4
553,969 + -2.0
553,969 + +0.3
553,969 + +1.1
553,969 + -0.0
553,969 + -0.6
553,969 + +1.3
553,969 + -0.3
553,970 - +0.7
553,970 - +0.2
553,970 - -0.5
553,970 - +2.4
553,970 - -2.9
553,970 - +0.6
553,970 - -1.9
553,970 - -2.3
554,012 + -0.6
554,012 + -2.4
554,013 - +0.8
554,016 + -0.9
554,300 + PfGW456L13_483 0.29 -2.1
554,300 + PfGW456L13_483 0.29 +1.3
554,301 - PfGW456L13_483 0.29 +1.5
554,301 - PfGW456L13_483 0.29 -3.8
554,383 - PfGW456L13_483 0.38 +2.4
554,982 + -1.6
554,982 + +0.2
554,982 + -1.3
554,982 + -3.2
554,983 - -0.8
555,005 + +2.5
555,006 - -3.3
555,128 + PfGW456L13_484 0.14 -1.1
555,128 + PfGW456L13_484 0.14 -1.8
555,128 + PfGW456L13_484 0.14 -2.7
555,129 - PfGW456L13_484 0.14 +1.8
555,129 - PfGW456L13_484 0.14 +0.9
555,137 + PfGW456L13_484 0.15 +1.5
555,137 + PfGW456L13_484 0.15 +0.4
555,137 + PfGW456L13_484 0.15 +0.8
555,138 - PfGW456L13_484 0.15 -2.6
555,251 + PfGW456L13_484 0.28 +0.4
555,345 + PfGW456L13_484 0.39 -0.4
555,503 + PfGW456L13_484 0.57 +1.8
555,503 + PfGW456L13_484 0.57 +2.1
555,503 + PfGW456L13_484 0.57 +1.3
555,503 + PfGW456L13_484 0.57 -1.9
555,503 + PfGW456L13_484 0.57 -2.1
555,504 - PfGW456L13_484 0.57 +0.0
555,504 - PfGW456L13_484 0.57 +0.8
555,504 - PfGW456L13_484 0.57 +1.4
555,504 - PfGW456L13_484 0.57 -1.8
555,504 - PfGW456L13_484 0.57 +0.7
555,585 - PfGW456L13_484 0.67 -0.4
555,585 - PfGW456L13_484 0.67 +1.4
555,585 - PfGW456L13_484 0.67 -1.8
555,958 + +1.8
555,959 - -2.1
555,989 + PfGW456L13_485 0.13 +0.2
555,989 + PfGW456L13_485 0.13 -1.1
555,989 + PfGW456L13_485 0.13 +0.3
555,990 - PfGW456L13_485 0.13 -0.1

Or see this region's nucleotide sequence