Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_442

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_440 and PfGW456L13_441 overlap by 21 nucleotidesPfGW456L13_441 and PfGW456L13_442 overlap by 14 nucleotidesPfGW456L13_442 and PfGW456L13_443 overlap by 12 nucleotides PfGW456L13_440 - Serine acetyltransferase (EC 2.3.1.30), at 506,437 to 507,363 _440 PfGW456L13_441 - hypothetical protein, at 507,343 to 507,456 _441 PfGW456L13_442 - hypothetical protein, at 507,443 to 507,565 _442 PfGW456L13_443 - D-cysteine desulfhydrase (EC 4.4.1.15), at 507,554 to 508,546 _443 Position (kb) 507 508Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 506.580 kb on - strand, within PfGW456L13_440at 506.684 kb on + strand, within PfGW456L13_440at 506.684 kb on + strand, within PfGW456L13_440at 506.684 kb on + strand, within PfGW456L13_440at 506.684 kb on + strand, within PfGW456L13_440at 506.685 kb on - strand, within PfGW456L13_440at 506.685 kb on - strand, within PfGW456L13_440at 506.685 kb on - strand, within PfGW456L13_440at 506.685 kb on - strand, within PfGW456L13_440at 506.685 kb on - strand, within PfGW456L13_440at 506.685 kb on - strand, within PfGW456L13_440at 506.852 kb on + strand, within PfGW456L13_440at 506.949 kb on - strand, within PfGW456L13_440at 506.949 kb on - strand, within PfGW456L13_440at 506.959 kb on + strand, within PfGW456L13_440at 507.074 kb on + strand, within PfGW456L13_440at 507.140 kb on + strand, within PfGW456L13_440at 507.366 kb on + strand, within PfGW456L13_441at 507.367 kb on - strand, within PfGW456L13_441at 507.415 kb on + strand, within PfGW456L13_441at 507.415 kb on + strand, within PfGW456L13_441at 507.416 kb on - strand, within PfGW456L13_441at 507.416 kb on - strand, within PfGW456L13_441at 507.416 kb on - strand, within PfGW456L13_441at 507.420 kb on + strand, within PfGW456L13_441at 507.444 kb on + strandat 507.444 kb on + strandat 507.445 kb on - strandat 507.445 kb on - strandat 507.445 kb on - strandat 507.454 kb on + strandat 507.455 kb on - strandat 507.480 kb on - strand, within PfGW456L13_442at 507.481 kb on + strand, within PfGW456L13_442at 507.518 kb on + strand, within PfGW456L13_442at 507.518 kb on + strand, within PfGW456L13_442at 507.518 kb on + strand, within PfGW456L13_442at 507.518 kb on + strand, within PfGW456L13_442at 507.519 kb on - strand, within PfGW456L13_442at 507.519 kb on - strand, within PfGW456L13_442at 507.519 kb on - strand, within PfGW456L13_442at 507.519 kb on - strand, within PfGW456L13_442at 507.519 kb on - strand, within PfGW456L13_442at 507.520 kb on + strand, within PfGW456L13_442at 507.520 kb on + strand, within PfGW456L13_442at 507.520 kb on + strand, within PfGW456L13_442at 507.521 kb on - strand, within PfGW456L13_442at 507.660 kb on - strand, within PfGW456L13_443at 507.660 kb on - strand, within PfGW456L13_443at 507.723 kb on - strand, within PfGW456L13_443at 507.723 kb on - strand, within PfGW456L13_443at 507.723 kb on - strand, within PfGW456L13_443at 507.840 kb on + strand, within PfGW456L13_443at 507.881 kb on + strand, within PfGW456L13_443at 507.881 kb on + strand, within PfGW456L13_443at 507.881 kb on + strand, within PfGW456L13_443at 507.881 kb on + strand, within PfGW456L13_443at 507.882 kb on - strand, within PfGW456L13_443at 507.882 kb on - strand, within PfGW456L13_443at 507.882 kb on - strand, within PfGW456L13_443at 508.058 kb on + strand, within PfGW456L13_443at 508.058 kb on + strand, within PfGW456L13_443at 508.058 kb on + strand, within PfGW456L13_443at 508.059 kb on - strand, within PfGW456L13_443at 508.059 kb on - strand, within PfGW456L13_443at 508.059 kb on - strand, within PfGW456L13_443at 508.059 kb on - strand, within PfGW456L13_443at 508.062 kb on + strand, within PfGW456L13_443at 508.063 kb on - strand, within PfGW456L13_443at 508.328 kb on + strand, within PfGW456L13_443at 508.329 kb on - strand, within PfGW456L13_443at 508.329 kb on - strand, within PfGW456L13_443at 508.329 kb on - strand, within PfGW456L13_443at 508.329 kb on - strand, within PfGW456L13_443at 508.329 kb on - strand, within PfGW456L13_443at 508.329 kb on - strand, within PfGW456L13_443at 508.421 kb on + strand, within PfGW456L13_443at 508.421 kb on + strand, within PfGW456L13_443at 508.421 kb on + strand, within PfGW456L13_443at 508.422 kb on - strand, within PfGW456L13_443at 508.489 kb on + strandat 508.489 kb on + strandat 508.490 kb on - strandat 508.529 kb on + strandat 508.529 kb on + strandat 508.544 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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506,580 - PfGW456L13_440 0.15 +1.2
506,684 + PfGW456L13_440 0.27 -2.5
506,684 + PfGW456L13_440 0.27 -1.0
506,684 + PfGW456L13_440 0.27 -1.6
506,684 + PfGW456L13_440 0.27 +0.3
506,685 - PfGW456L13_440 0.27 -0.7
506,685 - PfGW456L13_440 0.27 +1.6
506,685 - PfGW456L13_440 0.27 -2.2
506,685 - PfGW456L13_440 0.27 -1.8
506,685 - PfGW456L13_440 0.27 +1.1
506,685 - PfGW456L13_440 0.27 +1.9
506,852 + PfGW456L13_440 0.45 +1.2
506,949 - PfGW456L13_440 0.55 -1.0
506,949 - PfGW456L13_440 0.55 -1.0
506,959 + PfGW456L13_440 0.56 -2.2
507,074 + PfGW456L13_440 0.69 +2.3
507,140 + PfGW456L13_440 0.76 +0.7
507,366 + PfGW456L13_441 0.20 +0.5
507,367 - PfGW456L13_441 0.21 -0.0
507,415 + PfGW456L13_441 0.63 +1.2
507,415 + PfGW456L13_441 0.63 -0.3
507,416 - PfGW456L13_441 0.64 -0.3
507,416 - PfGW456L13_441 0.64 -0.0
507,416 - PfGW456L13_441 0.64 -2.2
507,420 + PfGW456L13_441 0.68 -0.4
507,444 + +0.7
507,444 + -1.9
507,445 - +0.3
507,445 - -1.6
507,445 - -1.6
507,454 + -0.6
507,455 - +2.6
507,480 - PfGW456L13_442 0.30 -0.3
507,481 + PfGW456L13_442 0.31 +1.5
507,518 + PfGW456L13_442 0.61 -1.1
507,518 + PfGW456L13_442 0.61 +3.7
507,518 + PfGW456L13_442 0.61 +1.2
507,518 + PfGW456L13_442 0.61 +2.9
507,519 - PfGW456L13_442 0.62 +1.0
507,519 - PfGW456L13_442 0.62 -4.0
507,519 - PfGW456L13_442 0.62 -2.3
507,519 - PfGW456L13_442 0.62 +2.2
507,519 - PfGW456L13_442 0.62 +1.0
507,520 + PfGW456L13_442 0.63 +2.1
507,520 + PfGW456L13_442 0.63 +0.1
507,520 + PfGW456L13_442 0.63 -3.7
507,521 - PfGW456L13_442 0.63 -1.7
507,660 - PfGW456L13_443 0.11 +0.2
507,660 - PfGW456L13_443 0.11 -1.8
507,723 - PfGW456L13_443 0.17 -0.2
507,723 - PfGW456L13_443 0.17 -0.1
507,723 - PfGW456L13_443 0.17 +0.3
507,840 + PfGW456L13_443 0.29 +1.9
507,881 + PfGW456L13_443 0.33 +2.6
507,881 + PfGW456L13_443 0.33 +1.1
507,881 + PfGW456L13_443 0.33 -2.0
507,881 + PfGW456L13_443 0.33 +1.4
507,882 - PfGW456L13_443 0.33 -1.1
507,882 - PfGW456L13_443 0.33 +1.9
507,882 - PfGW456L13_443 0.33 +0.1
508,058 + PfGW456L13_443 0.51 -1.6
508,058 + PfGW456L13_443 0.51 +0.4
508,058 + PfGW456L13_443 0.51 -3.5
508,059 - PfGW456L13_443 0.51 -0.2
508,059 - PfGW456L13_443 0.51 -1.1
508,059 - PfGW456L13_443 0.51 +4.4
508,059 - PfGW456L13_443 0.51 -3.0
508,062 + PfGW456L13_443 0.51 +1.1
508,063 - PfGW456L13_443 0.51 -0.4
508,328 + PfGW456L13_443 0.78 +1.0
508,329 - PfGW456L13_443 0.78 -3.2
508,329 - PfGW456L13_443 0.78 +1.4
508,329 - PfGW456L13_443 0.78 +1.8
508,329 - PfGW456L13_443 0.78 +1.3
508,329 - PfGW456L13_443 0.78 -2.7
508,329 - PfGW456L13_443 0.78 +1.2
508,421 + PfGW456L13_443 0.87 +0.6
508,421 + PfGW456L13_443 0.87 +2.0
508,421 + PfGW456L13_443 0.87 -1.1
508,422 - PfGW456L13_443 0.87 +1.6
508,489 + -3.0
508,489 + +0.1
508,490 - -2.5
508,529 + -1.3
508,529 + +0.8
508,544 + -2.2

Or see this region's nucleotide sequence