Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4416

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4414 and PfGW456L13_4415 are separated by 192 nucleotidesPfGW456L13_4415 and PfGW456L13_4416 are separated by 27 nucleotidesPfGW456L13_4416 and PfGW456L13_4417 are separated by 147 nucleotides PfGW456L13_4414 - Transcriptional regulator, AraC family, at 4,927,985 to 4,929,013 _4414 PfGW456L13_4415 - FIG027190: Putative transmembrane protein, at 4,929,206 to 4,929,517 _4415 PfGW456L13_4416 - Metal-dependent phosphohydrolase, HD subdomain, at 4,929,545 to 4,930,135 _4416 PfGW456L13_4417 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-) homolog, at 4,930,283 to 4,931,098 _4417 Position (kb) 4929 4930 4931Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4928.575 kb on + strand, within PfGW456L13_4414at 4928.576 kb on - strand, within PfGW456L13_4414at 4928.576 kb on - strand, within PfGW456L13_4414at 4928.682 kb on + strand, within PfGW456L13_4414at 4928.739 kb on + strand, within PfGW456L13_4414at 4929.057 kb on + strandat 4929.057 kb on + strandat 4929.058 kb on - strandat 4929.058 kb on - strandat 4929.058 kb on - strandat 4929.076 kb on - strandat 4929.082 kb on - strandat 4929.098 kb on + strandat 4929.099 kb on - strandat 4929.099 kb on - strandat 4929.141 kb on + strandat 4929.141 kb on + strandat 4929.141 kb on + strandat 4929.142 kb on - strandat 4929.151 kb on + strandat 4929.151 kb on + strandat 4929.152 kb on - strandat 4929.152 kb on - strandat 4929.156 kb on + strandat 4929.245 kb on + strand, within PfGW456L13_4415at 4929.245 kb on + strand, within PfGW456L13_4415at 4929.251 kb on + strand, within PfGW456L13_4415at 4929.252 kb on - strand, within PfGW456L13_4415at 4929.254 kb on + strand, within PfGW456L13_4415at 4929.254 kb on + strand, within PfGW456L13_4415at 4929.254 kb on + strand, within PfGW456L13_4415at 4929.254 kb on + strand, within PfGW456L13_4415at 4929.255 kb on - strand, within PfGW456L13_4415at 4929.291 kb on + strand, within PfGW456L13_4415at 4929.292 kb on - strand, within PfGW456L13_4415at 4929.316 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.482 kb on + strand, within PfGW456L13_4415at 4929.515 kb on + strandat 4929.515 kb on + strandat 4929.516 kb on - strandat 4929.627 kb on - strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.765 kb on - strand, within PfGW456L13_4416at 4929.765 kb on - strand, within PfGW456L13_4416at 4929.765 kb on - strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.906 kb on - strand, within PfGW456L13_4416at 4929.906 kb on - strand, within PfGW456L13_4416at 4929.906 kb on - strand, within PfGW456L13_4416at 4929.908 kb on + strand, within PfGW456L13_4416at 4929.908 kb on + strand, within PfGW456L13_4416at 4929.908 kb on + strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4930.001 kb on + strand, within PfGW456L13_4416at 4930.001 kb on + strand, within PfGW456L13_4416at 4930.001 kb on + strand, within PfGW456L13_4416at 4930.002 kb on - strand, within PfGW456L13_4416at 4930.002 kb on - strand, within PfGW456L13_4416at 4930.002 kb on - strand, within PfGW456L13_4416at 4930.029 kb on - strand, within PfGW456L13_4416at 4930.100 kb on + strandat 4930.100 kb on + strandat 4930.100 kb on + strandat 4930.100 kb on + strandat 4930.101 kb on - strandat 4930.264 kb on + strandat 4930.264 kb on + strandat 4930.264 kb on + strandat 4930.265 kb on - strandat 4930.265 kb on - strandat 4930.350 kb on + strandat 4930.350 kb on + strandat 4930.423 kb on - strand, within PfGW456L13_4417at 4930.423 kb on - strand, within PfGW456L13_4417at 4930.569 kb on + strand, within PfGW456L13_4417at 4930.569 kb on + strand, within PfGW456L13_4417at 4930.569 kb on + strand, within PfGW456L13_4417at 4930.593 kb on + strand, within PfGW456L13_4417at 4930.593 kb on + strand, within PfGW456L13_4417at 4930.651 kb on - strand, within PfGW456L13_4417at 4930.718 kb on + strand, within PfGW456L13_4417at 4930.836 kb on + strand, within PfGW456L13_4417at 4930.836 kb on + strand, within PfGW456L13_4417at 4930.836 kb on + strand, within PfGW456L13_4417at 4930.836 kb on + strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.837 kb on - strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.908 kb on + strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.909 kb on - strand, within PfGW456L13_4417at 4930.956 kb on + strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.957 kb on - strand, within PfGW456L13_4417at 4930.975 kb on - strand, within PfGW456L13_4417at 4931.045 kb on + strandat 4931.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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4,928,575 + PfGW456L13_4414 0.57 +0.3
4,928,576 - PfGW456L13_4414 0.57 +1.4
4,928,576 - PfGW456L13_4414 0.57 -2.9
4,928,682 + PfGW456L13_4414 0.68 +1.2
4,928,739 + PfGW456L13_4414 0.73 +1.8
4,929,057 + +1.0
4,929,057 + -2.0
4,929,058 - +0.4
4,929,058 - +0.3
4,929,058 - +0.8
4,929,076 - +0.4
4,929,082 - +2.2
4,929,098 + +0.3
4,929,099 - -0.2
4,929,099 - +1.5
4,929,141 + -2.8
4,929,141 + +1.8
4,929,141 + -2.2
4,929,142 - +2.2
4,929,151 + +3.3
4,929,151 + -1.9
4,929,152 - -1.3
4,929,152 - -2.0
4,929,156 + -0.8
4,929,245 + PfGW456L13_4415 0.12 -0.1
4,929,245 + PfGW456L13_4415 0.12 -0.6
4,929,251 + PfGW456L13_4415 0.14 +0.0
4,929,252 - PfGW456L13_4415 0.15 +0.4
4,929,254 + PfGW456L13_4415 0.15 -2.8
4,929,254 + PfGW456L13_4415 0.15 +0.6
4,929,254 + PfGW456L13_4415 0.15 +2.7
4,929,254 + PfGW456L13_4415 0.15 -2.0
4,929,255 - PfGW456L13_4415 0.16 -3.3
4,929,291 + PfGW456L13_4415 0.27 -0.8
4,929,292 - PfGW456L13_4415 0.28 +0.2
4,929,316 + PfGW456L13_4415 0.35 -1.6
4,929,455 + PfGW456L13_4415 0.80 -1.3
4,929,455 + PfGW456L13_4415 0.80 +0.0
4,929,455 + PfGW456L13_4415 0.80 -1.1
4,929,455 + PfGW456L13_4415 0.80 -1.9
4,929,455 + PfGW456L13_4415 0.80 -2.1
4,929,455 + PfGW456L13_4415 0.80 -0.9
4,929,456 - PfGW456L13_4415 0.80 -2.2
4,929,456 - PfGW456L13_4415 0.80 -2.5
4,929,456 - PfGW456L13_4415 0.80 +0.3
4,929,456 - PfGW456L13_4415 0.80 -2.1
4,929,456 - PfGW456L13_4415 0.80 -3.2
4,929,456 - PfGW456L13_4415 0.80 -3.2
4,929,456 - PfGW456L13_4415 0.80 +1.6
4,929,456 - PfGW456L13_4415 0.80 +0.0
4,929,456 - PfGW456L13_4415 0.80 +1.0
4,929,456 - PfGW456L13_4415 0.80 +0.2
4,929,456 - PfGW456L13_4415 0.80 -3.7
4,929,456 - PfGW456L13_4415 0.80 +0.8
4,929,456 - PfGW456L13_4415 0.80 +1.6
4,929,482 + PfGW456L13_4415 0.88 +1.2
4,929,515 + -0.1
4,929,515 + -2.2
4,929,516 - +0.1
4,929,627 - PfGW456L13_4416 0.14 +0.8
4,929,764 + PfGW456L13_4416 0.37 -0.6
4,929,764 + PfGW456L13_4416 0.37 -1.8
4,929,764 + PfGW456L13_4416 0.37 -0.3
4,929,764 + PfGW456L13_4416 0.37 -1.5
4,929,764 + PfGW456L13_4416 0.37 -1.6
4,929,764 + PfGW456L13_4416 0.37 +1.8
4,929,764 + PfGW456L13_4416 0.37 -2.5
4,929,764 + PfGW456L13_4416 0.37 +0.9
4,929,764 + PfGW456L13_4416 0.37 -0.3
4,929,764 + PfGW456L13_4416 0.37 +0.6
4,929,764 + PfGW456L13_4416 0.37 -3.6
4,929,764 + PfGW456L13_4416 0.37 +1.8
4,929,765 - PfGW456L13_4416 0.37 -1.8
4,929,765 - PfGW456L13_4416 0.37 -2.1
4,929,765 - PfGW456L13_4416 0.37 +2.5
4,929,812 + PfGW456L13_4416 0.45 +0.7
4,929,812 + PfGW456L13_4416 0.45 +1.6
4,929,812 + PfGW456L13_4416 0.45 +2.1
4,929,812 + PfGW456L13_4416 0.45 -3.0
4,929,812 + PfGW456L13_4416 0.45 -0.8
4,929,813 - PfGW456L13_4416 0.45 -2.2
4,929,813 - PfGW456L13_4416 0.45 -2.7
4,929,813 - PfGW456L13_4416 0.45 +1.0
4,929,813 - PfGW456L13_4416 0.45 +0.4
4,929,813 - PfGW456L13_4416 0.45 -0.9
4,929,813 - PfGW456L13_4416 0.45 -1.0
4,929,906 - PfGW456L13_4416 0.61 +0.7
4,929,906 - PfGW456L13_4416 0.61 +1.2
4,929,906 - PfGW456L13_4416 0.61 -0.3
4,929,908 + PfGW456L13_4416 0.61 -0.3
4,929,908 + PfGW456L13_4416 0.61 -0.0
4,929,908 + PfGW456L13_4416 0.61 +1.0
4,929,909 - PfGW456L13_4416 0.62 -0.8
4,929,909 - PfGW456L13_4416 0.62 -0.2
4,929,909 - PfGW456L13_4416 0.62 +2.0
4,929,909 - PfGW456L13_4416 0.62 -3.6
4,929,909 - PfGW456L13_4416 0.62 -0.1
4,929,909 - PfGW456L13_4416 0.62 -2.7
4,929,909 - PfGW456L13_4416 0.62 +2.3
4,929,909 - PfGW456L13_4416 0.62 -0.4
4,929,909 - PfGW456L13_4416 0.62 +2.4
4,929,909 - PfGW456L13_4416 0.62 -1.6
4,929,909 - PfGW456L13_4416 0.62 +0.9
4,929,909 - PfGW456L13_4416 0.62 +0.6
4,929,909 - PfGW456L13_4416 0.62 -1.8
4,930,001 + PfGW456L13_4416 0.77 -1.4
4,930,001 + PfGW456L13_4416 0.77 +1.4
4,930,001 + PfGW456L13_4416 0.77 -3.9
4,930,002 - PfGW456L13_4416 0.77 +0.7
4,930,002 - PfGW456L13_4416 0.77 -0.5
4,930,002 - PfGW456L13_4416 0.77 -0.9
4,930,029 - PfGW456L13_4416 0.82 +3.3
4,930,100 + -1.8
4,930,100 + +1.3
4,930,100 + +1.2
4,930,100 + -2.4
4,930,101 - -2.6
4,930,264 + -1.3
4,930,264 + -1.4
4,930,264 + -2.2
4,930,265 - -1.5
4,930,265 - -3.3
4,930,350 + +2.2
4,930,350 + -2.8
4,930,423 - PfGW456L13_4417 0.17 -1.9
4,930,423 - PfGW456L13_4417 0.17 -0.4
4,930,569 + PfGW456L13_4417 0.35 +1.1
4,930,569 + PfGW456L13_4417 0.35 +0.0
4,930,569 + PfGW456L13_4417 0.35 -3.9
4,930,593 + PfGW456L13_4417 0.38 -1.0
4,930,593 + PfGW456L13_4417 0.38 -2.2
4,930,651 - PfGW456L13_4417 0.45 +0.6
4,930,718 + PfGW456L13_4417 0.53 +0.5
4,930,836 + PfGW456L13_4417 0.68 -0.7
4,930,836 + PfGW456L13_4417 0.68 -2.2
4,930,836 + PfGW456L13_4417 0.68 +1.4
4,930,836 + PfGW456L13_4417 0.68 -1.2
4,930,837 - PfGW456L13_4417 0.68 +0.4
4,930,837 - PfGW456L13_4417 0.68 +2.8
4,930,837 - PfGW456L13_4417 0.68 -1.8
4,930,837 - PfGW456L13_4417 0.68 +0.5
4,930,837 - PfGW456L13_4417 0.68 -1.4
4,930,837 - PfGW456L13_4417 0.68 +0.1
4,930,908 + PfGW456L13_4417 0.77 -1.9
4,930,908 + PfGW456L13_4417 0.77 -1.0
4,930,908 + PfGW456L13_4417 0.77 -0.4
4,930,908 + PfGW456L13_4417 0.77 +2.4
4,930,908 + PfGW456L13_4417 0.77 -3.8
4,930,908 + PfGW456L13_4417 0.77 -1.7
4,930,909 - PfGW456L13_4417 0.77 -2.7
4,930,909 - PfGW456L13_4417 0.77 +2.2
4,930,909 - PfGW456L13_4417 0.77 -2.0
4,930,909 - PfGW456L13_4417 0.77 -1.9
4,930,909 - PfGW456L13_4417 0.77 -0.3
4,930,956 + PfGW456L13_4417 0.82 -0.6
4,930,957 - PfGW456L13_4417 0.83 -3.1
4,930,957 - PfGW456L13_4417 0.83 -1.8
4,930,957 - PfGW456L13_4417 0.83 +2.3
4,930,957 - PfGW456L13_4417 0.83 -0.1
4,930,957 - PfGW456L13_4417 0.83 -2.0
4,930,957 - PfGW456L13_4417 0.83 +1.1
4,930,975 - PfGW456L13_4417 0.85 -1.2
4,931,045 + -0.2
4,931,046 - +0.0

Or see this region's nucleotide sequence