Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_400

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_398 and PfGW456L13_399 are separated by 191 nucleotidesPfGW456L13_399 and PfGW456L13_400 are separated by 106 nucleotidesPfGW456L13_400 and PfGW456L13_401 overlap by 4 nucleotides PfGW456L13_398 - 4-aminobutyrate aminotransferase (EC 2.6.1.19), at 457,932 to 460,844 _398 PfGW456L13_399 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 461,036 to 461,581 _399 PfGW456L13_400 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 461,688 to 463,496 _400 PfGW456L13_401 - C4-dicarboxylate transport transcriptional regulatory protein, at 463,493 to 464,887 _401 Position (kb) 461 462 463 464Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 460.705 kb on + strandat 460.705 kb on + strandat 460.756 kb on + strandat 460.844 kb on + strandat 460.844 kb on + strandat 460.844 kb on + strandat 460.844 kb on + strandat 460.844 kb on + strandat 460.844 kb on + strandat 460.844 kb on + strandat 460.844 kb on + strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.845 kb on - strandat 460.865 kb on - strandat 460.867 kb on + strandat 460.867 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.876 kb on - strandat 460.876 kb on - strandat 460.876 kb on - strandat 460.876 kb on - strandat 460.877 kb on + strandat 460.898 kb on + strandat 460.954 kb on - strandat 460.961 kb on + strandat 460.961 kb on + strandat 461.043 kb on + strandat 461.043 kb on + strandat 461.044 kb on - strandat 461.044 kb on - strandat 461.044 kb on - strandat 461.044 kb on - strandat 461.044 kb on - strandat 461.044 kb on - strandat 461.044 kb on - strandat 461.649 kb on + strandat 461.649 kb on + strandat 461.649 kb on + strandat 461.649 kb on + strandat 461.650 kb on - strandat 461.650 kb on - strandat 461.655 kb on + strandat 461.655 kb on + strandat 461.655 kb on + strandat 461.656 kb on - strandat 461.666 kb on + strandat 461.667 kb on - strandat 461.790 kb on + strandat 461.791 kb on - strandat 461.791 kb on - strandat 461.794 kb on - strandat 461.838 kb on + strandat 461.838 kb on + strandat 461.838 kb on + strandat 461.838 kb on + strandat 461.838 kb on + strandat 461.838 kb on + strandat 461.839 kb on - strandat 461.839 kb on - strandat 461.871 kb on + strand, within PfGW456L13_400at 461.871 kb on + strand, within PfGW456L13_400at 461.872 kb on - strand, within PfGW456L13_400at 461.872 kb on - strand, within PfGW456L13_400at 461.872 kb on - strand, within PfGW456L13_400at 462.009 kb on + strand, within PfGW456L13_400at 462.009 kb on + strand, within PfGW456L13_400at 462.009 kb on + strand, within PfGW456L13_400at 462.009 kb on + strand, within PfGW456L13_400at 462.009 kb on + strand, within PfGW456L13_400at 462.010 kb on - strand, within PfGW456L13_400at 462.010 kb on - strand, within PfGW456L13_400at 462.010 kb on - strand, within PfGW456L13_400at 462.010 kb on - strand, within PfGW456L13_400at 462.010 kb on - strand, within PfGW456L13_400at 462.010 kb on - strand, within PfGW456L13_400at 462.010 kb on - strand, within PfGW456L13_400at 462.099 kb on + strand, within PfGW456L13_400at 462.171 kb on + strand, within PfGW456L13_400at 462.172 kb on - strand, within PfGW456L13_400at 462.172 kb on - strand, within PfGW456L13_400at 462.172 kb on - strand, within PfGW456L13_400at 462.527 kb on + strand, within PfGW456L13_400at 462.527 kb on + strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.606 kb on + strand, within PfGW456L13_400at 462.606 kb on + strand, within PfGW456L13_400at 462.606 kb on + strand, within PfGW456L13_400at 462.748 kb on + strand, within PfGW456L13_400at 462.856 kb on - strand, within PfGW456L13_400at 463.144 kb on + strand, within PfGW456L13_400at 463.144 kb on + strand, within PfGW456L13_400at 463.202 kb on + strand, within PfGW456L13_400at 463.203 kb on - strand, within PfGW456L13_400at 463.203 kb on - strand, within PfGW456L13_400at 463.203 kb on - strand, within PfGW456L13_400at 463.248 kb on + strand, within PfGW456L13_400at 463.248 kb on + strand, within PfGW456L13_400at 463.311 kb on + strand, within PfGW456L13_400at 463.311 kb on + strand, within PfGW456L13_400at 463.311 kb on + strand, within PfGW456L13_400at 463.311 kb on + strand, within PfGW456L13_400at 463.312 kb on - strand, within PfGW456L13_400at 463.312 kb on - strand, within PfGW456L13_400at 463.312 kb on - strand, within PfGW456L13_400at 463.728 kb on + strand, within PfGW456L13_401at 463.796 kb on + strand, within PfGW456L13_401at 463.797 kb on - strand, within PfGW456L13_401at 463.797 kb on - strand, within PfGW456L13_401at 463.797 kb on - strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.924 kb on - strand, within PfGW456L13_401at 463.924 kb on - strand, within PfGW456L13_401at 463.924 kb on - strand, within PfGW456L13_401at 464.408 kb on + strand, within PfGW456L13_401at 464.408 kb on + strand, within PfGW456L13_401at 464.408 kb on + strand, within PfGW456L13_401at 464.408 kb on + strand, within PfGW456L13_401at 464.409 kb on - strand, within PfGW456L13_401at 464.409 kb on - strand, within PfGW456L13_401at 464.486 kb on + strand, within PfGW456L13_401at 464.486 kb on + strand, within PfGW456L13_401at 464.486 kb on + strand, within PfGW456L13_401

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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460,705 + +0.0
460,705 + -0.1
460,756 + +2.9
460,844 + -1.7
460,844 + +3.9
460,844 + +0.3
460,844 + +2.2
460,844 + -1.9
460,844 + -2.9
460,844 + -0.5
460,844 + +1.3
460,845 - +1.8
460,845 - -0.9
460,845 - -1.6
460,845 - +1.3
460,845 - +1.0
460,845 - -1.1
460,845 - +1.8
460,845 - +1.9
460,845 - +0.2
460,845 - -2.0
460,845 - -2.4
460,845 - -1.1
460,845 - -0.4
460,865 - +1.2
460,867 + +0.4
460,867 + +0.0
460,875 + +0.6
460,875 + -2.3
460,875 + -3.5
460,875 + +2.5
460,875 + +1.1
460,875 + +1.7
460,875 + -1.1
460,876 - +1.1
460,876 - +0.4
460,876 - +0.9
460,876 - -0.9
460,877 + +0.5
460,898 + -1.2
460,954 - +0.9
460,961 + -0.1
460,961 + +1.5
461,043 + +1.9
461,043 + +3.8
461,044 - -0.2
461,044 - -0.1
461,044 - -2.2
461,044 - +5.6
461,044 - +0.6
461,044 - +1.3
461,044 - +3.1
461,649 + -2.6
461,649 + -2.2
461,649 + -0.4
461,649 + -0.3
461,650 - -1.2
461,650 - -3.9
461,655 + +0.2
461,655 + -3.4
461,655 + -0.2
461,656 - +1.0
461,666 + -3.5
461,667 - -1.8
461,790 + -2.2
461,791 - +3.0
461,791 - +4.3
461,794 - -1.8
461,838 + +0.7
461,838 + -3.6
461,838 + +3.3
461,838 + -2.7
461,838 + +0.6
461,838 + +3.5
461,839 - +0.3
461,839 - +0.3
461,871 + PfGW456L13_400 0.10 -0.4
461,871 + PfGW456L13_400 0.10 -1.6
461,872 - PfGW456L13_400 0.10 -0.1
461,872 - PfGW456L13_400 0.10 +0.1
461,872 - PfGW456L13_400 0.10 -0.7
462,009 + PfGW456L13_400 0.18 +0.5
462,009 + PfGW456L13_400 0.18 +1.2
462,009 + PfGW456L13_400 0.18 +2.9
462,009 + PfGW456L13_400 0.18 +2.8
462,009 + PfGW456L13_400 0.18 +2.2
462,010 - PfGW456L13_400 0.18 -1.4
462,010 - PfGW456L13_400 0.18 +1.5
462,010 - PfGW456L13_400 0.18 +1.5
462,010 - PfGW456L13_400 0.18 +0.9
462,010 - PfGW456L13_400 0.18 +1.6
462,010 - PfGW456L13_400 0.18 -2.2
462,010 - PfGW456L13_400 0.18 -1.0
462,099 + PfGW456L13_400 0.23 +1.1
462,171 + PfGW456L13_400 0.27 -3.1
462,172 - PfGW456L13_400 0.27 +0.5
462,172 - PfGW456L13_400 0.27 +0.1
462,172 - PfGW456L13_400 0.27 +1.6
462,527 + PfGW456L13_400 0.46 +2.5
462,527 + PfGW456L13_400 0.46 -0.9
462,528 - PfGW456L13_400 0.46 -0.5
462,528 - PfGW456L13_400 0.46 +0.2
462,528 - PfGW456L13_400 0.46 -2.5
462,528 - PfGW456L13_400 0.46 +0.2
462,528 - PfGW456L13_400 0.46 -0.1
462,528 - PfGW456L13_400 0.46 -0.0
462,606 + PfGW456L13_400 0.51 -1.7
462,606 + PfGW456L13_400 0.51 +3.6
462,606 + PfGW456L13_400 0.51 +2.9
462,748 + PfGW456L13_400 0.59 -3.4
462,856 - PfGW456L13_400 0.65 +1.8
463,144 + PfGW456L13_400 0.80 -1.3
463,144 + PfGW456L13_400 0.80 +3.8
463,202 + PfGW456L13_400 0.84 +4.0
463,203 - PfGW456L13_400 0.84 +2.0
463,203 - PfGW456L13_400 0.84 -1.0
463,203 - PfGW456L13_400 0.84 -1.6
463,248 + PfGW456L13_400 0.86 -1.4
463,248 + PfGW456L13_400 0.86 +4.7
463,311 + PfGW456L13_400 0.90 -2.3
463,311 + PfGW456L13_400 0.90 +4.5
463,311 + PfGW456L13_400 0.90 +2.1
463,311 + PfGW456L13_400 0.90 +1.7
463,312 - PfGW456L13_400 0.90 +0.8
463,312 - PfGW456L13_400 0.90 +1.7
463,312 - PfGW456L13_400 0.90 +0.2
463,728 + PfGW456L13_401 0.17 -2.1
463,796 + PfGW456L13_401 0.22 -3.0
463,797 - PfGW456L13_401 0.22 +0.3
463,797 - PfGW456L13_401 0.22 -0.3
463,797 - PfGW456L13_401 0.22 +1.4
463,923 + PfGW456L13_401 0.31 +0.7
463,923 + PfGW456L13_401 0.31 -4.7
463,923 + PfGW456L13_401 0.31 -2.3
463,923 + PfGW456L13_401 0.31 -3.1
463,923 + PfGW456L13_401 0.31 +0.8
463,923 + PfGW456L13_401 0.31 +2.0
463,924 - PfGW456L13_401 0.31 -3.7
463,924 - PfGW456L13_401 0.31 +3.1
463,924 - PfGW456L13_401 0.31 -2.7
464,408 + PfGW456L13_401 0.66 -1.7
464,408 + PfGW456L13_401 0.66 -2.0
464,408 + PfGW456L13_401 0.66 -2.8
464,408 + PfGW456L13_401 0.66 +1.4
464,409 - PfGW456L13_401 0.66 +0.3
464,409 - PfGW456L13_401 0.66 +1.3
464,486 + PfGW456L13_401 0.71 -2.1
464,486 + PfGW456L13_401 0.71 +0.4
464,486 + PfGW456L13_401 0.71 +0.6

Or see this region's nucleotide sequence