Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3968

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3967 and PfGW456L13_3968 are separated by 549 nucleotidesPfGW456L13_3968 and PfGW456L13_3969 are separated by 32 nucleotides PfGW456L13_3967 - Exodeoxyribonuclease III (EC 3.1.11.2), at 4,450,103 to 4,450,897 _3967 PfGW456L13_3968 - hypothetical protein, at 4,451,447 to 4,451,575 _3968 PfGW456L13_3969 - FIG312471: hypothetical protein, at 4,451,608 to 4,453,014 _3969 Position (kb) 4451 4452Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.504 kb on + strand, within PfGW456L13_3967at 4450.504 kb on + strand, within PfGW456L13_3967at 4450.530 kb on + strand, within PfGW456L13_3967at 4450.530 kb on + strandat 4450.531 kb on - strand, within PfGW456L13_3967at 4450.572 kb on + strand, within PfGW456L13_3967at 4450.572 kb on + strand, within PfGW456L13_3967at 4450.573 kb on - strand, within PfGW456L13_3967at 4450.573 kb on - strand, within PfGW456L13_3967at 4450.573 kb on - strand, within PfGW456L13_3967at 4450.621 kb on + strand, within PfGW456L13_3967at 4451.009 kb on - strandat 4451.211 kb on + strandat 4451.211 kb on + strandat 4451.211 kb on + strandat 4451.545 kb on + strand, within PfGW456L13_3968at 4451.595 kb on - strandat 4451.609 kb on + strandat 4451.669 kb on + strandat 4451.670 kb on - strandat 4451.670 kb on - strandat 4451.756 kb on + strand, within PfGW456L13_3969at 4451.802 kb on + strand, within PfGW456L13_3969at 4451.803 kb on - strand, within PfGW456L13_3969at 4451.855 kb on + strand, within PfGW456L13_3969at 4451.856 kb on - strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.918 kb on + strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4451.919 kb on - strand, within PfGW456L13_3969at 4452.035 kb on + strand, within PfGW456L13_3969at 4452.035 kb on + strand, within PfGW456L13_3969at 4452.036 kb on - strand, within PfGW456L13_3969at 4452.038 kb on + strand, within PfGW456L13_3969at 4452.038 kb on + strand, within PfGW456L13_3969at 4452.038 kb on + strand, within PfGW456L13_3969at 4452.038 kb on + strand, within PfGW456L13_3969at 4452.038 kb on + strand, within PfGW456L13_3969at 4452.038 kb on + strand, within PfGW456L13_3969at 4452.038 kb on + strand, within PfGW456L13_3969at 4452.038 kb on + strand, within PfGW456L13_3969at 4452.038 kb on + strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.039 kb on - strand, within PfGW456L13_3969at 4452.287 kb on + strand, within PfGW456L13_3969at 4452.287 kb on + strand, within PfGW456L13_3969at 4452.287 kb on + strand, within PfGW456L13_3969at 4452.288 kb on - strand, within PfGW456L13_3969at 4452.288 kb on - strand, within PfGW456L13_3969at 4452.288 kb on - strand, within PfGW456L13_3969at 4452.288 kb on - strand, within PfGW456L13_3969at 4452.288 kb on - strand, within PfGW456L13_3969at 4452.296 kb on + strand, within PfGW456L13_3969at 4452.296 kb on + strand, within PfGW456L13_3969at 4452.296 kb on + strand, within PfGW456L13_3969at 4452.296 kb on + strandat 4452.296 kb on + strand, within PfGW456L13_3969at 4452.296 kb on + strand, within PfGW456L13_3969at 4452.296 kb on + strand, within PfGW456L13_3969at 4452.297 kb on - strand, within PfGW456L13_3969at 4452.297 kb on - strand, within PfGW456L13_3969at 4452.297 kb on - strand, within PfGW456L13_3969at 4452.297 kb on - strand, within PfGW456L13_3969at 4452.297 kb on - strand, within PfGW456L13_3969at 4452.420 kb on - strand, within PfGW456L13_3969at 4452.450 kb on - strand, within PfGW456L13_3969

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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4,450,447 - PfGW456L13_3967 0.43 +0.1
4,450,447 - PfGW456L13_3967 0.43 +0.5
4,450,447 - PfGW456L13_3967 0.43 +0.5
4,450,447 - PfGW456L13_3967 0.43 -3.2
4,450,447 - PfGW456L13_3967 0.43 +3.6
4,450,504 + PfGW456L13_3967 0.50 +2.4
4,450,504 + PfGW456L13_3967 0.50 +0.8
4,450,530 + PfGW456L13_3967 0.54 -1.1
4,450,530 + -1.1
4,450,531 - PfGW456L13_3967 0.54 -2.1
4,450,572 + PfGW456L13_3967 0.59 -1.4
4,450,572 + PfGW456L13_3967 0.59 -1.3
4,450,573 - PfGW456L13_3967 0.59 -0.3
4,450,573 - PfGW456L13_3967 0.59 -2.5
4,450,573 - PfGW456L13_3967 0.59 +3.0
4,450,621 + PfGW456L13_3967 0.65 -3.2
4,451,009 - -1.3
4,451,211 + -0.6
4,451,211 + -0.4
4,451,211 + -0.6
4,451,545 + PfGW456L13_3968 0.76 -1.3
4,451,595 - -1.9
4,451,609 + +0.9
4,451,669 + +1.7
4,451,670 - +3.4
4,451,670 - +0.8
4,451,756 + PfGW456L13_3969 0.11 -2.6
4,451,802 + PfGW456L13_3969 0.14 +0.2
4,451,803 - PfGW456L13_3969 0.14 +0.2
4,451,855 + PfGW456L13_3969 0.18 -1.6
4,451,856 - PfGW456L13_3969 0.18 +1.4
4,451,918 + PfGW456L13_3969 0.22 -3.6
4,451,918 + PfGW456L13_3969 0.22 -3.8
4,451,918 + PfGW456L13_3969 0.22 -3.1
4,451,918 + PfGW456L13_3969 0.22 +1.1
4,451,918 + PfGW456L13_3969 0.22 +0.9
4,451,918 + PfGW456L13_3969 0.22 +3.4
4,451,918 + PfGW456L13_3969 0.22 +2.7
4,451,918 + PfGW456L13_3969 0.22 -4.1
4,451,918 + PfGW456L13_3969 0.22 +0.8
4,451,918 + PfGW456L13_3969 0.22 +1.5
4,451,918 + PfGW456L13_3969 0.22 +1.0
4,451,918 + PfGW456L13_3969 0.22 +1.7
4,451,918 + PfGW456L13_3969 0.22 -0.1
4,451,918 + PfGW456L13_3969 0.22 +1.1
4,451,918 + PfGW456L13_3969 0.22 -2.7
4,451,918 + PfGW456L13_3969 0.22 -2.8
4,451,918 + PfGW456L13_3969 0.22 +0.6
4,451,918 + PfGW456L13_3969 0.22 +2.9
4,451,918 + PfGW456L13_3969 0.22 -2.7
4,451,919 - PfGW456L13_3969 0.22 +0.6
4,451,919 - PfGW456L13_3969 0.22 +1.4
4,451,919 - PfGW456L13_3969 0.22 -1.8
4,451,919 - PfGW456L13_3969 0.22 +0.5
4,451,919 - PfGW456L13_3969 0.22 +1.4
4,451,919 - PfGW456L13_3969 0.22 -0.1
4,451,919 - PfGW456L13_3969 0.22 +3.2
4,451,919 - PfGW456L13_3969 0.22 +0.6
4,451,919 - PfGW456L13_3969 0.22 +0.6
4,451,919 - PfGW456L13_3969 0.22 +1.2
4,451,919 - PfGW456L13_3969 0.22 +0.9
4,451,919 - PfGW456L13_3969 0.22 +0.8
4,451,919 - PfGW456L13_3969 0.22 +0.3
4,451,919 - PfGW456L13_3969 0.22 +1.2
4,451,919 - PfGW456L13_3969 0.22 -0.0
4,451,919 - PfGW456L13_3969 0.22 +0.4
4,451,919 - PfGW456L13_3969 0.22 -1.8
4,451,919 - PfGW456L13_3969 0.22 +1.9
4,451,919 - PfGW456L13_3969 0.22 +0.8
4,451,919 - PfGW456L13_3969 0.22 +0.1
4,451,919 - PfGW456L13_3969 0.22 +1.2
4,451,919 - PfGW456L13_3969 0.22 -0.4
4,452,035 + PfGW456L13_3969 0.30 +0.7
4,452,035 + PfGW456L13_3969 0.30 +0.7
4,452,036 - PfGW456L13_3969 0.30 +0.8
4,452,038 + PfGW456L13_3969 0.31 +0.5
4,452,038 + PfGW456L13_3969 0.31 -0.3
4,452,038 + PfGW456L13_3969 0.31 +1.8
4,452,038 + PfGW456L13_3969 0.31 +0.2
4,452,038 + PfGW456L13_3969 0.31 +1.1
4,452,038 + PfGW456L13_3969 0.31 +2.1
4,452,038 + PfGW456L13_3969 0.31 +0.9
4,452,038 + PfGW456L13_3969 0.31 -0.9
4,452,038 + PfGW456L13_3969 0.31 +0.8
4,452,039 - PfGW456L13_3969 0.31 -0.3
4,452,039 - PfGW456L13_3969 0.31 +2.8
4,452,039 - PfGW456L13_3969 0.31 -0.3
4,452,039 - PfGW456L13_3969 0.31 -0.3
4,452,039 - PfGW456L13_3969 0.31 -3.7
4,452,039 - PfGW456L13_3969 0.31 -3.2
4,452,039 - PfGW456L13_3969 0.31 +0.9
4,452,039 - PfGW456L13_3969 0.31 -3.8
4,452,039 - PfGW456L13_3969 0.31 -2.2
4,452,039 - PfGW456L13_3969 0.31 -0.3
4,452,039 - PfGW456L13_3969 0.31 +0.2
4,452,039 - PfGW456L13_3969 0.31 -1.3
4,452,039 - PfGW456L13_3969 0.31 +0.1
4,452,287 + PfGW456L13_3969 0.48 -0.3
4,452,287 + PfGW456L13_3969 0.48 +1.5
4,452,287 + PfGW456L13_3969 0.48 -2.5
4,452,288 - PfGW456L13_3969 0.48 -1.3
4,452,288 - PfGW456L13_3969 0.48 -0.6
4,452,288 - PfGW456L13_3969 0.48 +0.2
4,452,288 - PfGW456L13_3969 0.48 -2.5
4,452,288 - PfGW456L13_3969 0.48 +0.2
4,452,296 + PfGW456L13_3969 0.49 -3.4
4,452,296 + PfGW456L13_3969 0.49 -1.2
4,452,296 + PfGW456L13_3969 0.49 +2.2
4,452,296 + -1.1
4,452,296 + PfGW456L13_3969 0.49 -1.3
4,452,296 + PfGW456L13_3969 0.49 -1.0
4,452,296 + PfGW456L13_3969 0.49 +2.9
4,452,297 - PfGW456L13_3969 0.49 -3.0
4,452,297 - PfGW456L13_3969 0.49 +0.5
4,452,297 - PfGW456L13_3969 0.49 -2.2
4,452,297 - PfGW456L13_3969 0.49 -1.9
4,452,297 - PfGW456L13_3969 0.49 -2.6
4,452,420 - PfGW456L13_3969 0.58 -1.5
4,452,450 - PfGW456L13_3969 0.60 +0.5

Or see this region's nucleotide sequence