Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3813

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3810 and PfGW456L13_3811 are separated by 192 nucleotidesPfGW456L13_3811 and PfGW456L13_3812 are separated by 13 nucleotidesPfGW456L13_3812 and PfGW456L13_3813 are separated by 130 nucleotidesPfGW456L13_3813 and PfGW456L13_3814 are separated by 217 nucleotidesPfGW456L13_3814 and PfGW456L13_3815 are separated by 3 nucleotides PfGW456L13_3810 - hypothetical protein, at 4,281,522 to 4,281,680 _3810 PfGW456L13_3811 - hypothetical protein, at 4,281,873 to 4,282,112 _3811 PfGW456L13_3812 - Osmotically inducible lipoprotein OsmE, at 4,282,126 to 4,282,476 _3812 PfGW456L13_3813 - hypothetical protein, at 4,282,607 to 4,282,795 _3813 PfGW456L13_3814 - MutT/nudix family protein, at 4,283,013 to 4,283,375 _3814 PfGW456L13_3815 - Probable signal peptide protein, at 4,283,379 to 4,284,083 _3815 Position (kb) 4282 4283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4281.711 kb on - strandat 4281.711 kb on - strandat 4281.744 kb on + strandat 4281.744 kb on + strandat 4281.744 kb on + strandat 4281.755 kb on - strandat 4281.771 kb on + strandat 4281.772 kb on - strandat 4281.772 kb on - strandat 4281.819 kb on + strandat 4281.819 kb on + strandat 4281.819 kb on + strandat 4281.819 kb on + strandat 4281.819 kb on + strandat 4281.820 kb on - strandat 4281.820 kb on - strandat 4281.820 kb on - strandat 4281.840 kb on - strandat 4281.882 kb on - strandat 4281.882 kb on - strandat 4282.030 kb on + strand, within PfGW456L13_3811at 4282.030 kb on + strand, within PfGW456L13_3811at 4282.031 kb on - strand, within PfGW456L13_3811at 4282.031 kb on - strand, within PfGW456L13_3811at 4282.139 kb on + strandat 4282.139 kb on + strandat 4282.157 kb on + strandat 4282.195 kb on + strand, within PfGW456L13_3812at 4282.195 kb on + strand, within PfGW456L13_3812at 4282.195 kb on + strand, within PfGW456L13_3812at 4282.195 kb on + strand, within PfGW456L13_3812at 4282.195 kb on + strand, within PfGW456L13_3812at 4282.196 kb on - strand, within PfGW456L13_3812at 4282.196 kb on - strand, within PfGW456L13_3812at 4282.306 kb on - strand, within PfGW456L13_3812at 4282.318 kb on + strand, within PfGW456L13_3812at 4282.319 kb on - strand, within PfGW456L13_3812at 4282.351 kb on + strand, within PfGW456L13_3812at 4282.351 kb on + strand, within PfGW456L13_3812at 4282.351 kb on + strand, within PfGW456L13_3812at 4282.351 kb on + strand, within PfGW456L13_3812at 4282.352 kb on - strand, within PfGW456L13_3812at 4282.352 kb on - strand, within PfGW456L13_3812at 4282.352 kb on - strand, within PfGW456L13_3812at 4282.472 kb on - strandat 4282.474 kb on + strandat 4282.501 kb on + strandat 4282.501 kb on + strandat 4282.714 kb on + strand, within PfGW456L13_3813at 4282.714 kb on + strand, within PfGW456L13_3813at 4282.715 kb on - strand, within PfGW456L13_3813at 4282.718 kb on + strand, within PfGW456L13_3813at 4282.718 kb on + strand, within PfGW456L13_3813at 4282.718 kb on + strand, within PfGW456L13_3813at 4282.718 kb on + strand, within PfGW456L13_3813at 4282.718 kb on + strand, within PfGW456L13_3813at 4282.719 kb on - strand, within PfGW456L13_3813at 4282.748 kb on + strand, within PfGW456L13_3813at 4282.748 kb on + strand, within PfGW456L13_3813at 4282.749 kb on - strand, within PfGW456L13_3813at 4282.749 kb on - strand, within PfGW456L13_3813at 4282.795 kb on + strandat 4282.795 kb on + strandat 4282.795 kb on + strandat 4282.795 kb on + strandat 4282.796 kb on - strandat 4282.796 kb on - strandat 4282.796 kb on - strandat 4282.796 kb on - strandat 4282.796 kb on - strandat 4282.836 kb on + strandat 4282.837 kb on - strandat 4282.841 kb on + strandat 4282.841 kb on + strandat 4282.841 kb on + strandat 4282.841 kb on + strandat 4282.841 kb on + strandat 4282.842 kb on - strandat 4282.842 kb on - strandat 4282.842 kb on - strandat 4282.842 kb on - strandat 4282.842 kb on - strandat 4282.842 kb on - strandat 4282.842 kb on - strandat 4282.842 kb on - strandat 4282.932 kb on - strandat 4282.932 kb on - strandat 4282.937 kb on + strandat 4282.938 kb on - strandat 4282.938 kb on - strandat 4283.003 kb on + strandat 4283.003 kb on + strandat 4283.003 kb on + strandat 4283.004 kb on - strandat 4283.004 kb on - strandat 4283.004 kb on - strandat 4283.007 kb on + strandat 4283.007 kb on + strandat 4283.008 kb on - strandat 4283.020 kb on + strandat 4283.056 kb on + strand, within PfGW456L13_3814at 4283.056 kb on + strand, within PfGW456L13_3814at 4283.056 kb on + strand, within PfGW456L13_3814at 4283.056 kb on + strand, within PfGW456L13_3814at 4283.056 kb on + strand, within PfGW456L13_3814at 4283.056 kb on + strand, within PfGW456L13_3814at 4283.056 kb on + strand, within PfGW456L13_3814at 4283.056 kb on + strand, within PfGW456L13_3814at 4283.056 kb on + strand, within PfGW456L13_3814at 4283.056 kb on + strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.057 kb on - strand, within PfGW456L13_3814at 4283.185 kb on + strand, within PfGW456L13_3814at 4283.185 kb on + strand, within PfGW456L13_3814at 4283.185 kb on + strand, within PfGW456L13_3814at 4283.185 kb on + strand, within PfGW456L13_3814at 4283.185 kb on + strand, within PfGW456L13_3814at 4283.186 kb on - strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.187 kb on + strand, within PfGW456L13_3814at 4283.188 kb on - strand, within PfGW456L13_3814at 4283.188 kb on - strand, within PfGW456L13_3814at 4283.188 kb on - strand, within PfGW456L13_3814at 4283.188 kb on - strand, within PfGW456L13_3814at 4283.188 kb on - strand, within PfGW456L13_3814at 4283.227 kb on + strandat 4283.228 kb on - strand, within PfGW456L13_3814at 4283.228 kb on - strand, within PfGW456L13_3814at 4283.228 kb on - strand, within PfGW456L13_3814at 4283.228 kb on - strand, within PfGW456L13_3814at 4283.228 kb on - strand, within PfGW456L13_3814at 4283.228 kb on - strand, within PfGW456L13_3814at 4283.228 kb on - strand, within PfGW456L13_3814at 4283.228 kb on - strand, within PfGW456L13_3814at 4283.311 kb on + strand, within PfGW456L13_3814at 4283.345 kb on + strandat 4283.363 kb on - strandat 4283.373 kb on + strandat 4283.374 kb on - strandat 4283.592 kb on - strand, within PfGW456L13_3815at 4283.592 kb on - strand, within PfGW456L13_3815at 4283.592 kb on - strand, within PfGW456L13_3815at 4283.606 kb on + strand, within PfGW456L13_3815at 4283.634 kb on - strand, within PfGW456L13_3815at 4283.711 kb on - strand, within PfGW456L13_3815at 4283.711 kb on - strand, within PfGW456L13_3815at 4283.711 kb on - strand, within PfGW456L13_3815at 4283.711 kb on - strand, within PfGW456L13_3815at 4283.751 kb on + strand, within PfGW456L13_3815at 4283.752 kb on - strand, within PfGW456L13_3815at 4283.752 kb on - strand, within PfGW456L13_3815at 4283.752 kb on - strand, within PfGW456L13_3815at 4283.752 kb on - strand, within PfGW456L13_3815

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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4,281,711 - +2.3
4,281,711 - -0.4
4,281,744 + +0.2
4,281,744 + +0.7
4,281,744 + +1.7
4,281,755 - -4.0
4,281,771 + +1.9
4,281,772 - +0.0
4,281,772 - +2.1
4,281,819 + -1.8
4,281,819 + +0.6
4,281,819 + -1.2
4,281,819 + +0.4
4,281,819 + +1.6
4,281,820 - -3.6
4,281,820 - -0.3
4,281,820 - -1.4
4,281,840 - -3.2
4,281,882 - -3.2
4,281,882 - +0.7
4,282,030 + PfGW456L13_3811 0.65 +0.1
4,282,030 + PfGW456L13_3811 0.65 -3.0
4,282,031 - PfGW456L13_3811 0.66 +2.7
4,282,031 - PfGW456L13_3811 0.66 +1.4
4,282,139 + +1.3
4,282,139 + +0.4
4,282,157 + -0.4
4,282,195 + PfGW456L13_3812 0.20 -0.9
4,282,195 + PfGW456L13_3812 0.20 +0.4
4,282,195 + PfGW456L13_3812 0.20 +0.2
4,282,195 + PfGW456L13_3812 0.20 +1.5
4,282,195 + PfGW456L13_3812 0.20 +1.1
4,282,196 - PfGW456L13_3812 0.20 +1.2
4,282,196 - PfGW456L13_3812 0.20 +2.6
4,282,306 - PfGW456L13_3812 0.51 -2.9
4,282,318 + PfGW456L13_3812 0.55 -3.9
4,282,319 - PfGW456L13_3812 0.55 +0.5
4,282,351 + PfGW456L13_3812 0.64 -2.3
4,282,351 + PfGW456L13_3812 0.64 -1.5
4,282,351 + PfGW456L13_3812 0.64 +3.6
4,282,351 + PfGW456L13_3812 0.64 +1.7
4,282,352 - PfGW456L13_3812 0.64 -2.7
4,282,352 - PfGW456L13_3812 0.64 -2.0
4,282,352 - PfGW456L13_3812 0.64 -2.0
4,282,472 - -2.4
4,282,474 + +1.4
4,282,501 + +3.4
4,282,501 + +3.2
4,282,714 + PfGW456L13_3813 0.57 +3.8
4,282,714 + PfGW456L13_3813 0.57 -2.4
4,282,715 - PfGW456L13_3813 0.57 +2.3
4,282,718 + PfGW456L13_3813 0.59 -2.0
4,282,718 + PfGW456L13_3813 0.59 +2.3
4,282,718 + PfGW456L13_3813 0.59 +1.0
4,282,718 + PfGW456L13_3813 0.59 -2.0
4,282,718 + PfGW456L13_3813 0.59 +2.2
4,282,719 - PfGW456L13_3813 0.59 +1.1
4,282,748 + PfGW456L13_3813 0.75 +1.8
4,282,748 + PfGW456L13_3813 0.75 -0.4
4,282,749 - PfGW456L13_3813 0.75 -0.2
4,282,749 - PfGW456L13_3813 0.75 +0.4
4,282,795 + -2.4
4,282,795 + +2.9
4,282,795 + -2.3
4,282,795 + +0.9
4,282,796 - -1.7
4,282,796 - +1.5
4,282,796 - +1.1
4,282,796 - -3.3
4,282,796 - -2.5
4,282,836 + -2.3
4,282,837 - +0.2
4,282,841 + +0.4
4,282,841 + +1.9
4,282,841 + -3.2
4,282,841 + -0.6
4,282,841 + -1.0
4,282,842 - +0.4
4,282,842 - -2.5
4,282,842 - +0.4
4,282,842 - +0.3
4,282,842 - +0.3
4,282,842 - +0.5
4,282,842 - +1.2
4,282,842 - -1.9
4,282,932 - +1.6
4,282,932 - -1.4
4,282,937 + +0.6
4,282,938 - +0.7
4,282,938 - -1.7
4,283,003 + +0.2
4,283,003 + -2.0
4,283,003 + -1.8
4,283,004 - -2.0
4,283,004 - +1.1
4,283,004 - -2.3
4,283,007 + -2.7
4,283,007 + +1.5
4,283,008 - +2.2
4,283,020 + +0.8
4,283,056 + PfGW456L13_3814 0.12 +0.8
4,283,056 + PfGW456L13_3814 0.12 -2.3
4,283,056 + PfGW456L13_3814 0.12 -2.5
4,283,056 + PfGW456L13_3814 0.12 -0.1
4,283,056 + PfGW456L13_3814 0.12 -2.1
4,283,056 + PfGW456L13_3814 0.12 -1.4
4,283,056 + PfGW456L13_3814 0.12 -0.0
4,283,056 + PfGW456L13_3814 0.12 -3.0
4,283,056 + PfGW456L13_3814 0.12 -0.4
4,283,056 + PfGW456L13_3814 0.12 -2.5
4,283,057 - PfGW456L13_3814 0.12 +1.8
4,283,057 - PfGW456L13_3814 0.12 +0.8
4,283,057 - PfGW456L13_3814 0.12 -2.5
4,283,057 - PfGW456L13_3814 0.12 +1.9
4,283,057 - PfGW456L13_3814 0.12 +0.6
4,283,057 - PfGW456L13_3814 0.12 +0.8
4,283,057 - PfGW456L13_3814 0.12 -2.9
4,283,057 - PfGW456L13_3814 0.12 +0.9
4,283,057 - PfGW456L13_3814 0.12 +0.3
4,283,057 - PfGW456L13_3814 0.12 -1.5
4,283,057 - PfGW456L13_3814 0.12 -0.9
4,283,185 + PfGW456L13_3814 0.47 +1.1
4,283,185 + PfGW456L13_3814 0.47 -0.0
4,283,185 + PfGW456L13_3814 0.47 -3.0
4,283,185 + PfGW456L13_3814 0.47 -2.3
4,283,185 + PfGW456L13_3814 0.47 +1.1
4,283,186 - PfGW456L13_3814 0.48 +2.0
4,283,187 + PfGW456L13_3814 0.48 -0.1
4,283,187 + PfGW456L13_3814 0.48 +0.3
4,283,187 + PfGW456L13_3814 0.48 -2.3
4,283,187 + PfGW456L13_3814 0.48 -2.9
4,283,187 + PfGW456L13_3814 0.48 -3.4
4,283,187 + PfGW456L13_3814 0.48 -3.6
4,283,187 + PfGW456L13_3814 0.48 -1.3
4,283,187 + PfGW456L13_3814 0.48 +4.3
4,283,187 + PfGW456L13_3814 0.48 -1.6
4,283,187 + PfGW456L13_3814 0.48 -0.7
4,283,187 + PfGW456L13_3814 0.48 +1.3
4,283,187 + PfGW456L13_3814 0.48 -0.0
4,283,187 + PfGW456L13_3814 0.48 -0.4
4,283,187 + PfGW456L13_3814 0.48 +1.1
4,283,187 + PfGW456L13_3814 0.48 +0.6
4,283,188 - PfGW456L13_3814 0.48 -0.1
4,283,188 - PfGW456L13_3814 0.48 -3.8
4,283,188 - PfGW456L13_3814 0.48 +0.0
4,283,188 - PfGW456L13_3814 0.48 -2.4
4,283,188 - PfGW456L13_3814 0.48 -0.2
4,283,227 + -0.4
4,283,228 - PfGW456L13_3814 0.59 -1.0
4,283,228 - PfGW456L13_3814 0.59 -2.9
4,283,228 - PfGW456L13_3814 0.59 +1.0
4,283,228 - PfGW456L13_3814 0.59 +2.4
4,283,228 - PfGW456L13_3814 0.59 -0.3
4,283,228 - PfGW456L13_3814 0.59 -3.8
4,283,228 - PfGW456L13_3814 0.59 +1.4
4,283,228 - PfGW456L13_3814 0.59 -0.9
4,283,311 + PfGW456L13_3814 0.82 -0.8
4,283,345 + -0.7
4,283,363 - -3.2
4,283,373 + +1.5
4,283,374 - +0.1
4,283,592 - PfGW456L13_3815 0.30 +1.8
4,283,592 - PfGW456L13_3815 0.30 -2.8
4,283,592 - PfGW456L13_3815 0.30 -1.6
4,283,606 + PfGW456L13_3815 0.32 -1.5
4,283,634 - PfGW456L13_3815 0.36 -0.2
4,283,711 - PfGW456L13_3815 0.47 -2.8
4,283,711 - PfGW456L13_3815 0.47 -0.0
4,283,711 - PfGW456L13_3815 0.47 +1.2
4,283,711 - PfGW456L13_3815 0.47 -2.3
4,283,751 + PfGW456L13_3815 0.53 -0.1
4,283,752 - PfGW456L13_3815 0.53 -1.6
4,283,752 - PfGW456L13_3815 0.53 +1.5
4,283,752 - PfGW456L13_3815 0.53 -3.5
4,283,752 - PfGW456L13_3815 0.53 -0.6

Or see this region's nucleotide sequence