Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3697

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3695 and PfGW456L13_3696 are separated by 28 nucleotidesPfGW456L13_3696 and PfGW456L13_3697 are separated by 11 nucleotidesPfGW456L13_3697 and PfGW456L13_3698 are separated by 614 nucleotides PfGW456L13_3695 - Arsenic efflux pump protein, at 4,158,076 to 4,159,359 _3695 PfGW456L13_3696 - Arsenate reductase (EC 1.20.4.1), at 4,159,388 to 4,159,858 _3696 PfGW456L13_3697 - Arsenic resistance protein ArsH, at 4,159,870 to 4,160,565 _3697 PfGW456L13_3698 - hypothetical protein, at 4,161,180 to 4,161,341 _3698 Position (kb) 4159 4160 4161Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4158.943 kb on + strand, within PfGW456L13_3695at 4158.943 kb on + strand, within PfGW456L13_3695at 4158.943 kb on + strand, within PfGW456L13_3695at 4158.943 kb on + strand, within PfGW456L13_3695at 4158.943 kb on + strand, within PfGW456L13_3695at 4158.943 kb on + strand, within PfGW456L13_3695at 4158.944 kb on - strand, within PfGW456L13_3695at 4158.944 kb on - strand, within PfGW456L13_3695at 4158.944 kb on - strand, within PfGW456L13_3695at 4158.944 kb on - strand, within PfGW456L13_3695at 4158.944 kb on - strand, within PfGW456L13_3695at 4158.944 kb on - strand, within PfGW456L13_3695at 4158.944 kb on - strand, within PfGW456L13_3695at 4158.944 kb on - strand, within PfGW456L13_3695at 4158.944 kb on - strand, within PfGW456L13_3695at 4158.956 kb on - strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.985 kb on + strand, within PfGW456L13_3695at 4158.986 kb on - strand, within PfGW456L13_3695at 4158.986 kb on - strand, within PfGW456L13_3695at 4158.986 kb on - strand, within PfGW456L13_3695at 4158.986 kb on - strand, within PfGW456L13_3695at 4159.162 kb on + strand, within PfGW456L13_3695at 4159.162 kb on + strand, within PfGW456L13_3695at 4159.163 kb on - strand, within PfGW456L13_3695at 4159.163 kb on - strand, within PfGW456L13_3695at 4159.266 kb on + strandat 4159.276 kb on + strandat 4159.277 kb on - strandat 4159.277 kb on - strandat 4159.277 kb on - strandat 4159.279 kb on + strandat 4159.279 kb on + strandat 4159.279 kb on + strandat 4159.279 kb on + strandat 4159.279 kb on + strandat 4159.279 kb on + strandat 4159.280 kb on - strandat 4159.280 kb on - strandat 4159.402 kb on + strandat 4159.402 kb on + strandat 4159.402 kb on + strandat 4159.402 kb on + strandat 4159.402 kb on + strandat 4159.417 kb on + strandat 4159.417 kb on + strandat 4159.417 kb on + strandat 4159.417 kb on + strandat 4159.418 kb on - strandat 4159.418 kb on - strandat 4159.418 kb on - strandat 4159.659 kb on - strand, within PfGW456L13_3696at 4159.659 kb on - strand, within PfGW456L13_3696at 4159.659 kb on - strand, within PfGW456L13_3696at 4159.710 kb on + strand, within PfGW456L13_3696at 4159.710 kb on + strand, within PfGW456L13_3696at 4159.854 kb on + strandat 4159.854 kb on + strandat 4159.854 kb on + strandat 4159.961 kb on + strand, within PfGW456L13_3697at 4159.961 kb on + strand, within PfGW456L13_3697at 4159.961 kb on + strand, within PfGW456L13_3697at 4159.962 kb on - strand, within PfGW456L13_3697at 4159.962 kb on - strandat 4159.962 kb on - strand, within PfGW456L13_3697at 4159.962 kb on - strand, within PfGW456L13_3697at 4159.963 kb on + strand, within PfGW456L13_3697at 4159.963 kb on + strand, within PfGW456L13_3697at 4159.964 kb on - strand, within PfGW456L13_3697at 4159.964 kb on - strand, within PfGW456L13_3697at 4159.964 kb on - strand, within PfGW456L13_3697at 4159.964 kb on - strand, within PfGW456L13_3697at 4160.422 kb on + strand, within PfGW456L13_3697at 4160.422 kb on + strand, within PfGW456L13_3697at 4160.569 kb on + strandat 4160.569 kb on + strandat 4160.569 kb on + strandat 4160.570 kb on - strandat 4160.570 kb on - strandat 4160.677 kb on + strandat 4160.678 kb on - strandat 4160.717 kb on + strandat 4160.717 kb on + strandat 4160.717 kb on + strandat 4160.717 kb on + strandat 4160.718 kb on - strandat 4160.726 kb on - strandat 4161.181 kb on + strandat 4161.362 kb on + strandat 4161.362 kb on + strandat 4161.362 kb on + strandat 4161.362 kb on + strandat 4161.378 kb on + strandat 4161.379 kb on - strandat 4161.379 kb on - strandat 4161.386 kb on + strandat 4161.386 kb on + strandat 4161.386 kb on + strandat 4161.387 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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4,158,943 + PfGW456L13_3695 0.68 -2.1
4,158,943 + PfGW456L13_3695 0.68 -3.5
4,158,943 + PfGW456L13_3695 0.68 +0.9
4,158,943 + PfGW456L13_3695 0.68 +1.7
4,158,943 + PfGW456L13_3695 0.68 +2.6
4,158,943 + PfGW456L13_3695 0.68 +0.8
4,158,944 - PfGW456L13_3695 0.68 -0.0
4,158,944 - PfGW456L13_3695 0.68 +3.5
4,158,944 - PfGW456L13_3695 0.68 +1.1
4,158,944 - PfGW456L13_3695 0.68 -3.7
4,158,944 - PfGW456L13_3695 0.68 +0.9
4,158,944 - PfGW456L13_3695 0.68 +1.0
4,158,944 - PfGW456L13_3695 0.68 +0.5
4,158,944 - PfGW456L13_3695 0.68 -3.7
4,158,944 - PfGW456L13_3695 0.68 -1.3
4,158,956 - PfGW456L13_3695 0.69 -1.2
4,158,985 + PfGW456L13_3695 0.71 +1.2
4,158,985 + PfGW456L13_3695 0.71 -1.7
4,158,985 + PfGW456L13_3695 0.71 -0.4
4,158,985 + PfGW456L13_3695 0.71 +0.3
4,158,985 + PfGW456L13_3695 0.71 -0.6
4,158,985 + PfGW456L13_3695 0.71 -3.2
4,158,985 + PfGW456L13_3695 0.71 -3.3
4,158,985 + PfGW456L13_3695 0.71 -1.1
4,158,985 + PfGW456L13_3695 0.71 -1.8
4,158,985 + PfGW456L13_3695 0.71 +0.8
4,158,985 + PfGW456L13_3695 0.71 -3.2
4,158,985 + PfGW456L13_3695 0.71 -0.8
4,158,985 + PfGW456L13_3695 0.71 -1.7
4,158,985 + PfGW456L13_3695 0.71 +1.2
4,158,985 + PfGW456L13_3695 0.71 -0.7
4,158,985 + PfGW456L13_3695 0.71 -1.3
4,158,985 + PfGW456L13_3695 0.71 +0.3
4,158,985 + PfGW456L13_3695 0.71 -0.5
4,158,985 + PfGW456L13_3695 0.71 -0.0
4,158,985 + PfGW456L13_3695 0.71 -0.1
4,158,985 + PfGW456L13_3695 0.71 -2.9
4,158,986 - PfGW456L13_3695 0.71 -2.6
4,158,986 - PfGW456L13_3695 0.71 -0.7
4,158,986 - PfGW456L13_3695 0.71 -2.8
4,158,986 - PfGW456L13_3695 0.71 -0.1
4,159,162 + PfGW456L13_3695 0.85 -2.8
4,159,162 + PfGW456L13_3695 0.85 +0.3
4,159,163 - PfGW456L13_3695 0.85 +1.3
4,159,163 - PfGW456L13_3695 0.85 -0.2
4,159,266 + -0.8
4,159,276 + -0.3
4,159,277 - -2.0
4,159,277 - +1.9
4,159,277 - +0.2
4,159,279 + -3.2
4,159,279 + +0.7
4,159,279 + +0.2
4,159,279 + -0.8
4,159,279 + +0.4
4,159,279 + -0.4
4,159,280 - -2.7
4,159,280 - +0.6
4,159,402 + -2.4
4,159,402 + -0.9
4,159,402 + +0.8
4,159,402 + -0.5
4,159,402 + +0.4
4,159,417 + -0.8
4,159,417 + +2.3
4,159,417 + -2.7
4,159,417 + +0.7
4,159,418 - +1.4
4,159,418 - +0.5
4,159,418 - +2.6
4,159,659 - PfGW456L13_3696 0.58 -3.6
4,159,659 - PfGW456L13_3696 0.58 +0.2
4,159,659 - PfGW456L13_3696 0.58 -2.0
4,159,710 + PfGW456L13_3696 0.68 +0.9
4,159,710 + PfGW456L13_3696 0.68 -0.2
4,159,854 + +1.2
4,159,854 + +2.6
4,159,854 + -0.5
4,159,961 + PfGW456L13_3697 0.13 +1.4
4,159,961 + PfGW456L13_3697 0.13 +2.9
4,159,961 + PfGW456L13_3697 0.13 +0.2
4,159,962 - PfGW456L13_3697 0.13 +1.9
4,159,962 - +3.5
4,159,962 - PfGW456L13_3697 0.13 -0.3
4,159,962 - PfGW456L13_3697 0.13 -0.2
4,159,963 + PfGW456L13_3697 0.13 +2.1
4,159,963 + PfGW456L13_3697 0.13 +0.2
4,159,964 - PfGW456L13_3697 0.14 -1.0
4,159,964 - PfGW456L13_3697 0.14 -4.0
4,159,964 - PfGW456L13_3697 0.14 -0.8
4,159,964 - PfGW456L13_3697 0.14 +3.8
4,160,422 + PfGW456L13_3697 0.79 +1.6
4,160,422 + PfGW456L13_3697 0.79 +0.1
4,160,569 + -0.1
4,160,569 + -0.3
4,160,569 + +0.9
4,160,570 - -3.1
4,160,570 - +1.9
4,160,677 + +1.3
4,160,678 - +1.0
4,160,717 + +0.9
4,160,717 + -3.2
4,160,717 + -1.4
4,160,717 + +3.2
4,160,718 - +0.2
4,160,726 - -0.6
4,161,181 + -3.7
4,161,362 + +0.4
4,161,362 + -1.3
4,161,362 + -1.4
4,161,362 + +1.6
4,161,378 + -1.0
4,161,379 - +0.7
4,161,379 - +2.3
4,161,386 + +0.8
4,161,386 + -2.4
4,161,386 + +0.1
4,161,387 - +0.3

Or see this region's nucleotide sequence