Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_364

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_363 and PfGW456L13_364 are separated by 229 nucleotidesPfGW456L13_364 and PfGW456L13_365 are separated by 78 nucleotides PfGW456L13_363 - MFS permease, at 421,939 to 423,603 _363 PfGW456L13_364 - FIG00958480: hypothetical protein, at 423,833 to 424,237 _364 PfGW456L13_365 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 424,316 to 426,547 _365 Position (kb) 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 422.921 kb on + strand, within PfGW456L13_363at 422.921 kb on + strand, within PfGW456L13_363at 422.921 kb on + strand, within PfGW456L13_363at 422.922 kb on - strand, within PfGW456L13_363at 422.922 kb on - strand, within PfGW456L13_363at 422.922 kb on - strand, within PfGW456L13_363at 422.922 kb on - strand, within PfGW456L13_363at 423.177 kb on + strand, within PfGW456L13_363at 423.178 kb on - strand, within PfGW456L13_363at 423.179 kb on + strand, within PfGW456L13_363at 423.179 kb on + strand, within PfGW456L13_363at 423.179 kb on + strand, within PfGW456L13_363at 423.179 kb on + strand, within PfGW456L13_363at 423.179 kb on + strand, within PfGW456L13_363at 423.179 kb on + strand, within PfGW456L13_363at 423.179 kb on + strand, within PfGW456L13_363at 423.180 kb on - strand, within PfGW456L13_363at 423.180 kb on - strand, within PfGW456L13_363at 423.180 kb on - strand, within PfGW456L13_363at 423.180 kb on - strand, within PfGW456L13_363at 423.180 kb on - strand, within PfGW456L13_363at 423.180 kb on - strand, within PfGW456L13_363at 423.317 kb on + strand, within PfGW456L13_363at 423.317 kb on + strand, within PfGW456L13_363at 423.318 kb on - strand, within PfGW456L13_363at 423.318 kb on - strand, within PfGW456L13_363at 423.318 kb on - strand, within PfGW456L13_363at 423.318 kb on - strand, within PfGW456L13_363at 423.318 kb on - strand, within PfGW456L13_363at 423.458 kb on + strandat 423.459 kb on - strandat 423.608 kb on + strandat 423.608 kb on + strandat 423.608 kb on + strandat 423.609 kb on - strandat 423.609 kb on - strandat 423.619 kb on + strandat 423.619 kb on + strandat 423.619 kb on + strandat 423.619 kb on + strandat 423.619 kb on + strandat 423.620 kb on - strandat 423.620 kb on - strandat 423.620 kb on - strandat 423.620 kb on - strandat 423.620 kb on - strandat 423.659 kb on + strandat 423.660 kb on - strandat 423.660 kb on - strandat 423.687 kb on - strandat 423.743 kb on + strandat 423.743 kb on + strandat 423.744 kb on - strandat 423.744 kb on - strandat 423.744 kb on - strandat 423.899 kb on + strand, within PfGW456L13_364at 423.899 kb on + strand, within PfGW456L13_364at 423.899 kb on + strand, within PfGW456L13_364at 423.900 kb on - strand, within PfGW456L13_364at 423.900 kb on - strand, within PfGW456L13_364at 423.900 kb on - strand, within PfGW456L13_364at 424.062 kb on + strand, within PfGW456L13_364at 424.062 kb on + strand, within PfGW456L13_364at 424.062 kb on + strand, within PfGW456L13_364at 424.063 kb on - strand, within PfGW456L13_364at 424.063 kb on - strand, within PfGW456L13_364at 424.063 kb on - strand, within PfGW456L13_364at 424.063 kb on - strand, within PfGW456L13_364at 424.063 kb on - strand, within PfGW456L13_364at 424.063 kb on - strand, within PfGW456L13_364at 424.063 kb on - strand, within PfGW456L13_364at 424.267 kb on + strandat 424.267 kb on + strandat 424.267 kb on + strandat 424.268 kb on - strandat 424.268 kb on - strandat 424.268 kb on - strandat 424.268 kb on - strandat 424.269 kb on + strandat 424.269 kb on + strandat 424.269 kb on + strandat 424.269 kb on + strandat 424.269 kb on + strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.270 kb on - strandat 424.297 kb on + strandat 424.301 kb on + strandat 424.301 kb on + strandat 424.301 kb on + strandat 424.301 kb on + strandat 424.301 kb on + strandat 424.302 kb on - strandat 424.302 kb on - strandat 424.302 kb on - strandat 424.302 kb on - strandat 424.302 kb on - strandat 424.302 kb on - strandat 424.302 kb on - strandat 424.347 kb on + strandat 424.348 kb on - strandat 424.348 kb on - strandat 424.348 kb on - strandat 424.418 kb on + strandat 424.418 kb on + strandat 424.419 kb on - strandat 424.419 kb on - strandat 424.419 kb on - strandat 424.584 kb on + strand, within PfGW456L13_365at 424.585 kb on - strand, within PfGW456L13_365at 424.585 kb on - strand, within PfGW456L13_365at 424.585 kb on - strand, within PfGW456L13_365at 424.585 kb on - strand, within PfGW456L13_365at 424.585 kb on - strand, within PfGW456L13_365at 424.641 kb on + strand, within PfGW456L13_365at 424.641 kb on + strand, within PfGW456L13_365at 424.641 kb on + strand, within PfGW456L13_365at 424.641 kb on + strand, within PfGW456L13_365at 424.641 kb on + strand, within PfGW456L13_365at 424.641 kb on + strand, within PfGW456L13_365at 424.641 kb on + strand, within PfGW456L13_365at 424.641 kb on + strand, within PfGW456L13_365at 424.642 kb on - strand, within PfGW456L13_365at 424.642 kb on - strand, within PfGW456L13_365at 424.642 kb on - strand, within PfGW456L13_365at 424.642 kb on - strand, within PfGW456L13_365at 424.642 kb on - strand, within PfGW456L13_365at 424.842 kb on + strand, within PfGW456L13_365at 424.842 kb on + strand, within PfGW456L13_365at 424.862 kb on + strand, within PfGW456L13_365at 424.903 kb on + strand, within PfGW456L13_365at 424.903 kb on + strand, within PfGW456L13_365

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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422,921 + PfGW456L13_363 0.59 -0.4
422,921 + PfGW456L13_363 0.59 -2.6
422,921 + PfGW456L13_363 0.59 -0.2
422,922 - PfGW456L13_363 0.59 +0.6
422,922 - PfGW456L13_363 0.59 +0.7
422,922 - PfGW456L13_363 0.59 +0.2
422,922 - PfGW456L13_363 0.59 -2.7
423,177 + PfGW456L13_363 0.74 +0.2
423,178 - PfGW456L13_363 0.74 -0.7
423,179 + PfGW456L13_363 0.74 +1.4
423,179 + PfGW456L13_363 0.74 -1.1
423,179 + PfGW456L13_363 0.74 -2.6
423,179 + PfGW456L13_363 0.74 -0.5
423,179 + PfGW456L13_363 0.74 -0.5
423,179 + PfGW456L13_363 0.74 -3.5
423,179 + PfGW456L13_363 0.74 +1.9
423,180 - PfGW456L13_363 0.75 +0.7
423,180 - PfGW456L13_363 0.75 -0.2
423,180 - PfGW456L13_363 0.75 +0.3
423,180 - PfGW456L13_363 0.75 +1.5
423,180 - PfGW456L13_363 0.75 +0.2
423,180 - PfGW456L13_363 0.75 +0.3
423,317 + PfGW456L13_363 0.83 +2.6
423,317 + PfGW456L13_363 0.83 -1.7
423,318 - PfGW456L13_363 0.83 -1.7
423,318 - PfGW456L13_363 0.83 +0.3
423,318 - PfGW456L13_363 0.83 -1.2
423,318 - PfGW456L13_363 0.83 -2.8
423,318 - PfGW456L13_363 0.83 +0.5
423,458 + -1.9
423,459 - -1.5
423,608 + +1.0
423,608 + +0.7
423,608 + -2.4
423,609 - -1.6
423,609 - -0.0
423,619 + -2.8
423,619 + -1.7
423,619 + -0.9
423,619 + -3.1
423,619 + -1.5
423,620 - -3.7
423,620 - +0.2
423,620 - +1.4
423,620 - -0.9
423,620 - +1.6
423,659 + -0.0
423,660 - +0.3
423,660 - -1.5
423,687 - +0.9
423,743 + -0.2
423,743 + +1.2
423,744 - +0.3
423,744 - -0.7
423,744 - +2.4
423,899 + PfGW456L13_364 0.16 -0.7
423,899 + PfGW456L13_364 0.16 -2.5
423,899 + PfGW456L13_364 0.16 +0.5
423,900 - PfGW456L13_364 0.17 -2.5
423,900 - PfGW456L13_364 0.17 -1.4
423,900 - PfGW456L13_364 0.17 -1.0
424,062 + PfGW456L13_364 0.57 +0.7
424,062 + PfGW456L13_364 0.57 +2.4
424,062 + PfGW456L13_364 0.57 +1.0
424,063 - PfGW456L13_364 0.57 +1.4
424,063 - PfGW456L13_364 0.57 +0.8
424,063 - PfGW456L13_364 0.57 -1.8
424,063 - PfGW456L13_364 0.57 +0.7
424,063 - PfGW456L13_364 0.57 -0.1
424,063 - PfGW456L13_364 0.57 +0.5
424,063 - PfGW456L13_364 0.57 -1.8
424,267 + -2.7
424,267 + -3.0
424,267 + -1.0
424,268 - -3.6
424,268 - +1.1
424,268 - +0.0
424,268 - +0.4
424,269 + -0.5
424,269 + -0.1
424,269 + +1.4
424,269 + +0.3
424,269 + +1.8
424,270 - -1.4
424,270 - +0.2
424,270 - -0.8
424,270 - -1.3
424,270 - -0.0
424,270 - -0.5
424,270 - -2.5
424,270 - -2.4
424,270 - +2.1
424,270 - +0.4
424,270 - +1.1
424,297 + -0.0
424,301 + +0.8
424,301 + +2.3
424,301 + +2.5
424,301 + +0.4
424,301 + -2.0
424,302 - -0.5
424,302 - +1.2
424,302 - -0.6
424,302 - -1.3
424,302 - +0.1
424,302 - -0.2
424,302 - +1.3
424,347 + +0.4
424,348 - +2.2
424,348 - +0.9
424,348 - -0.1
424,418 + +0.6
424,418 + +1.8
424,419 - -1.3
424,419 - -2.7
424,419 - +2.4
424,584 + PfGW456L13_365 0.12 +1.1
424,585 - PfGW456L13_365 0.12 +1.2
424,585 - PfGW456L13_365 0.12 +1.9
424,585 - PfGW456L13_365 0.12 +0.5
424,585 - PfGW456L13_365 0.12 -0.1
424,585 - PfGW456L13_365 0.12 +0.8
424,641 + PfGW456L13_365 0.15 +1.2
424,641 + PfGW456L13_365 0.15 +1.0
424,641 + PfGW456L13_365 0.15 +0.5
424,641 + PfGW456L13_365 0.15 -2.9
424,641 + PfGW456L13_365 0.15 +1.1
424,641 + PfGW456L13_365 0.15 +1.8
424,641 + PfGW456L13_365 0.15 -0.2
424,641 + PfGW456L13_365 0.15 -2.2
424,642 - PfGW456L13_365 0.15 -0.6
424,642 - PfGW456L13_365 0.15 -2.4
424,642 - PfGW456L13_365 0.15 -1.5
424,642 - PfGW456L13_365 0.15 +0.2
424,642 - PfGW456L13_365 0.15 -1.7
424,842 + PfGW456L13_365 0.24 +2.1
424,842 + PfGW456L13_365 0.24 -2.9
424,862 + PfGW456L13_365 0.24 -0.4
424,903 + PfGW456L13_365 0.26 -0.9
424,903 + PfGW456L13_365 0.26 -3.6

Or see this region's nucleotide sequence